RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 SLC38A7Q9NVC3 462 aa22.72■■□□□ 1.23
UPF3A-201ENST00000351487 ARMCX1Q9P291 453 aa22.72■■□□□ 1.23
UPF3A-201ENST00000351487 PSAT1Q9Y617 370 aa22.72■■□□□ 1.23
UPF3A-201ENST00000351487 NCAM2O15394 837 aa22.71■■□□□ 1.23
UPF3A-201ENST00000351487 PLIN3O60664 434 aa22.71■■□□□ 1.23
UPF3A-201ENST00000351487 ERCC2P18074 760 aa22.71■■□□□ 1.23
UPF3A-201ENST00000351487 AQP5P55064 265 aa22.71■■□□□ 1.23
UPF3A-201ENST00000351487 INSCQ1MX18 579 aa22.71■■□□□ 1.23
UPF3A-201ENST00000351487 N4BP2L1Q5TBK1 243 aaPredicted RBP22.71■■□□□ 1.23
UPF3A-201ENST00000351487 DSTYKQ6XUX3 929 aa22.71■■□□□ 1.23
UPF3A-201ENST00000351487 FAM35AQ86V20 835 aa22.71■■□□□ 1.23
UPF3A-201ENST00000351487 TP53INP2Q8IXH6 220 aa22.71■■□□□ 1.23
UPF3A-201ENST00000351487 CERS2Q96G23 380 aa22.71■■□□□ 1.23
UPF3A-201ENST00000351487 GORASP1Q9BQQ3 440 aa22.71■■□□□ 1.23
UPF3A-201ENST00000351487 TSPYL2Q9H2G4 693 aaPredicted RBP22.71■■□□□ 1.23
UPF3A-201ENST00000351487 SDAD1Q9NVU7 687 aaKnown RBP eCLIP22.71■■□□□ 1.23
UPF3A-201ENST00000351487 CLEC11AQ9Y240 323 aa22.71■■□□□ 1.23
UPF3A-201ENST00000351487 Q9Y3F1 56 aa22.71■■□□□ 1.23
UPF3A-201ENST00000351487 COL4A4P53420 1690 aaPredicted RBP22.71■■□□□ 1.23
UPF3A-201ENST00000351487 FAM72CH0Y354 149 aa22.7■■□□□ 1.23
UPF3A-201ENST00000351487 GNAT1P11488 350 aa22.7■■□□□ 1.23
UPF3A-201ENST00000351487 PTPN3P26045 913 aa22.7■■□□□ 1.23
UPF3A-201ENST00000351487 CLNS1AP54105 237 aaKnown RBP22.7■■□□□ 1.23
UPF3A-201ENST00000351487 TBCCQ15814 346 aa22.7■■□□□ 1.23
UPF3A-201ENST00000351487 RAB41Q5JT25 222 aa22.7■■□□□ 1.23
UPF3A-201ENST00000351487 FAM72AQ5TYM5 149 aa22.7■■□□□ 1.23
UPF3A-201ENST00000351487 FAM72DQ6L9T8 149 aa22.7■■□□□ 1.23
UPF3A-201ENST00000351487 PID1Q7Z2X4 250 aa22.7■■□□□ 1.23
UPF3A-201ENST00000351487 FAM72BQ86X60 149 aa22.7■■□□□ 1.23
UPF3A-201ENST00000351487 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP22.7■■□□□ 1.23
UPF3A-201ENST00000351487 TMEM86AQ8N2M4 240 aa22.7■■□□□ 1.23
UPF3A-201ENST00000351487 SMC1BQ8NDV3 1235 aa22.7■■□□□ 1.23
UPF3A-201ENST00000351487 MCUR1Q96AQ8 359 aa22.7■■□□□ 1.23
UPF3A-201ENST00000351487 SENP8Q96LD8 212 aa22.7■■□□□ 1.23
UPF3A-201ENST00000351487 SYT15Q9BQS2 421 aa22.7■■□□□ 1.23
UPF3A-201ENST00000351487 ZFATQ9P243 1243 aa22.7■■□□□ 1.23
UPF3A-201ENST00000351487 YJEFN3A6XGL0 299 aa22.7■■□□□ 1.22
UPF3A-201ENST00000351487 I6L893 689 aaPredicted RBP22.7■■□□□ 1.22
UPF3A-201ENST00000351487 CAPN9O14815 690 aa22.7■■□□□ 1.22
UPF3A-201ENST00000351487 FGF3P11487 239 aaPredicted RBP22.7■■□□□ 1.22
UPF3A-201ENST00000351487 GP5P40197 560 aa22.7■■□□□ 1.22
UPF3A-201ENST00000351487 LHX1P48742 406 aa22.7■■□□□ 1.22
UPF3A-201ENST00000351487 PPIDQ08752 370 aaKnown RBP22.7■■□□□ 1.22
UPF3A-201ENST00000351487 INTS6LQ5JSJ4 861 aaKnown RBP22.7■■□□□ 1.22
UPF3A-201ENST00000351487 BSPRYQ5W0U4 402 aa22.7■■□□□ 1.22
UPF3A-201ENST00000351487 ZCCHC23Q6ZST2 131 aa22.7■■□□□ 1.22
UPF3A-201ENST00000351487 RASSF3Q86WH2 238 aa22.7■■□□□ 1.22
UPF3A-201ENST00000351487 TREML1Q86YW5 311 aa22.7■■□□□ 1.22
UPF3A-201ENST00000351487 TEX9Q8N6V9 391 aa22.7■■□□□ 1.22
UPF3A-201ENST00000351487 ISL2Q96A47 359 aa22.7■■□□□ 1.22
UPF3A-201ENST00000351487 CPNE1Q99829 537 aa22.7■■□□□ 1.22
UPF3A-201ENST00000351487 SMOQ99835 787 aa22.7■■□□□ 1.22
UPF3A-201ENST00000351487 ANLNQ9NQW6 1124 aa22.7■■□□□ 1.22
UPF3A-201ENST00000351487 KLHL8Q9P2G9 620 aaPredicted RBP22.7■■□□□ 1.22
UPF3A-201ENST00000351487 PPARGC1AQ9UBK2 798 aaKnown RBP22.7■■□□□ 1.22
UPF3A-201ENST00000351487 MARCOQ9UEW3 520 aaPredicted RBP22.7■■□□□ 1.22
UPF3A-201ENST00000351487 FBXW11Q9UKB1 542 aa22.7■■□□□ 1.22
UPF3A-201ENST00000351487 LRRC42Q9Y546 428 aa22.7■■□□□ 1.22
UPF3A-201ENST00000351487 TRPM7Q96QT4 1865 aa22.69■■□□□ 1.22
UPF3A-201ENST00000351487 KCNK1O00180 336 aa22.69■■□□□ 1.22
UPF3A-201ENST00000351487 AP2A1O95782 977 aa22.69■■□□□ 1.22
UPF3A-201ENST00000351487 IGFBP6P24592 240 aaPredicted RBP22.69■■□□□ 1.22
UPF3A-201ENST00000351487 TPI1P60174 286 aa22.69■■□□□ 1.22
UPF3A-201ENST00000351487 BEX3Q00994 111 aa22.69■■□□□ 1.22
UPF3A-201ENST00000351487 FRG1Q14331 258 aaKnown RBP22.69■■□□□ 1.22
UPF3A-201ENST00000351487 GPATCH11Q8N954 259 aa22.69■■□□□ 1.22
UPF3A-201ENST00000351487 GSTCDQ8NEC7 633 aa22.69■■□□□ 1.22
UPF3A-201ENST00000351487 ZMIZ2Q8NF64 920 aa22.69■■□□□ 1.22
UPF3A-201ENST00000351487 KCNV2Q8TDN2 545 aa22.69■■□□□ 1.22
UPF3A-201ENST00000351487 BRD8Q9H0E9 1235 aa22.69■■□□□ 1.22
UPF3A-201ENST00000351487 STN1Q9H668 368 aaKnown RBP22.69■■□□□ 1.22
UPF3A-201ENST00000351487 RPS6KL1Q9Y6S9 549 aa22.69■■□□□ 1.22
UPF3A-201ENST00000351487 AP1G2O75843 785 aa22.69■■□□□ 1.22
UPF3A-201ENST00000351487 SERPINA6P08185 405 aa22.69■■□□□ 1.22
UPF3A-201ENST00000351487 KITP10721 976 aa22.69■■□□□ 1.22
UPF3A-201ENST00000351487 PCLAFQ15004 111 aa22.69■■□□□ 1.22
UPF3A-201ENST00000351487 KHDC1Q4VXA5 237 aaKnown RBP22.69■■□□□ 1.22
UPF3A-201ENST00000351487 ARHGAP24Q8N264 748 aa22.69■■□□□ 1.22
UPF3A-201ENST00000351487 PCED1BQ96HM7 432 aa22.69■■□□□ 1.22
UPF3A-201ENST00000351487 AP5M1Q9H0R1 490 aa22.69■■□□□ 1.22
UPF3A-201ENST00000351487 LRRC40Q9H9A6 602 aa22.69■■□□□ 1.22
UPF3A-201ENST00000351487 BATF3Q9NR55 127 aa22.69■■□□□ 1.22
UPF3A-201ENST00000351487 RRN3Q9NYV6 651 aa22.69■■□□□ 1.22
UPF3A-201ENST00000351487 PTCH2Q9Y6C5 1203 aa22.69■■□□□ 1.22
UPF3A-201ENST00000351487 PRKCGP05129 697 aa22.68■■□□□ 1.22
UPF3A-201ENST00000351487 MAGEA12P43365 314 aa22.68■■□□□ 1.22
UPF3A-201ENST00000351487 CMPK2Q5EBM0 449 aa22.68■■□□□ 1.22
UPF3A-201ENST00000351487 TEDDM1Q5T9Z0 273 aa22.68■■□□□ 1.22
UPF3A-201ENST00000351487 GRTP1Q5TC63 336 aa22.68■■□□□ 1.22
UPF3A-201ENST00000351487 TAF2Q6P1X5 1199 aa22.68■■□□□ 1.22
UPF3A-201ENST00000351487 C16orf46Q6P387 395 aa22.68■■□□□ 1.22
UPF3A-201ENST00000351487 GPRIN1Q7Z2K8 1008 aa22.68■■□□□ 1.22
UPF3A-201ENST00000351487 PPP1R14CQ8TAE6 165 aa22.68■■□□□ 1.22
UPF3A-201ENST00000351487 HDAC11Q96DB2 347 aa22.68■■□□□ 1.22
UPF3A-201ENST00000351487 CCDC106Q9BWC9 280 aa22.68■■□□□ 1.22
UPF3A-201ENST00000351487 TXNDC16Q9P2K2 825 aa22.68■■□□□ 1.22
UPF3A-201ENST00000351487 CPA4Q9UI42 421 aa22.68■■□□□ 1.22
UPF3A-201ENST00000351487 ADAM28Q9UKQ2 775 aa22.68■■□□□ 1.22
UPF3A-201ENST00000351487 SORCS3Q9UPU3 1222 aa22.68■■□□□ 1.22
UPF3A-201ENST00000351487 ERI2A8K979 691 aaKnown RBP22.67■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms