RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 IGFALSP35858 605 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 CXADRP78310 365 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 SCGB2A2Q13296 93 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 SNTA1Q13424 505 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 ABHD17BQ5VST6 288 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 PRSS58Q8IYP2 241 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 RBBP8NLQ8NC74 664 aaPredicted RBP8.62□□□□□ -1.03
HMGB1-203ENST00000341423 KRT35Q92764 455 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 MKL1Q969V6 931 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 ZDHHC12Q96GR4 267 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 FAM83CQ9BQN1 747 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 ASPSCR1Q9BZE9 553 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 HPS4Q9NQG7 708 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 GUCA1BQ9UMX6 200 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 IQGAP3Q86VI3 1631 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 C11orf97A0A1B0GVM6 126 aaPredicted RBP8.62□□□□□ -1.03
HMGB1-203ENST00000341423 GFPT2O94808 682 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 PRKAR1AP10644 381 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 HMOX2P30519 316 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 HSPA9P38646 679 aaKnown RBP8.62□□□□□ -1.03
HMGB1-203ENST00000341423 SLC11A1P49279 550 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 MARC1Q5VT66 337 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 RTL10Q7L3V2 364 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 TFAP2DQ7Z6R9 452 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 C1orf210Q8IVY1 113 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 MYLPFQ96A32 169 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 PRPF18Q99633 342 aaKnown RBP8.62□□□□□ -1.03
HMGB1-203ENST00000341423 KCNK9Q9NPC2 374 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 ANAPC2Q9UJX6 822 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 UTP11Q9Y3A2 253 aaKnown RBP8.62□□□□□ -1.03
HMGB1-203ENST00000341423 OR10H1Q9Y4A9 318 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 DTNAQ9Y4J8 743 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 AHDC1Q5TGY3 1603 aaPredicted RBP8.62□□□□□ -1.03
HMGB1-203ENST00000341423 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 A0A0J9YVX5 310 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 H3BNC9 293 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 APOL1O14791 398 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 CATP04040 527 aaKnown RBP8.62□□□□□ -1.03
HMGB1-203ENST00000341423 ITGA8P53708 1063 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 WDR49Q8IV35 697 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 BBS7Q8IWZ6 715 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 TMEFF1Q8IYR6 380 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 RPLP0P6Q8NHW5 317 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 CNDP2Q96KP4 475 aaKnown RBP8.62□□□□□ -1.03
HMGB1-203ENST00000341423 SYTL2Q9HCH5 934 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 LZTS1Q9Y250 596 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 INO80Q9ULG1 1556 aaPredicted RBP8.62□□□□□ -1.03
HMGB1-203ENST00000341423 ADAMTSL3P82987 1691 aa8.62□□□□□ -1.03
HMGB1-203ENST00000341423 MAFO75444 373 aaPredicted RBP8.61□□□□□ -1.03
HMGB1-203ENST00000341423 MT-ND3P03897 115 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 HBQ1P09105 142 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 CCR10P46092 362 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 GNA13Q14344 377 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 CYB5R4Q7L1T6 521 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 RCOR2Q8IZ40 523 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 KLK6Q92876 244 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 PPP1R14AQ96A00 147 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 HEPHQ9BQS7 1158 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 OSBPL1AQ9BXW6 950 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 KCNN2Q9H2S1 579 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 NRDE2Q9H7Z3 1164 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 CARS2Q9HA77 564 aaKnown RBP8.61□□□□□ -1.03
HMGB1-203ENST00000341423 COPS7AQ9UBW8 275 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 IP6K2Q9UHH9 426 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 ABCB7O75027 752 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 RNF40O75150 1001 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 OR6A2O95222 327 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 GLDCP23378 1020 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 FLT3P36888 993 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 NPTX2P47972 431 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 TUBP50607 506 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 RBM10P98175 930 aaKnown RBP8.61□□□□□ -1.03
HMGB1-203ENST00000341423 CYP24A1Q07973 514 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 KCNA1Q09470 495 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 TROAPQ12815 778 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 CDC16Q13042 620 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 MAN2A1Q16706 1144 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 BMT2Q1RMZ1 405 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 ZNF792Q3KQV3 632 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 TTC39BQ5VTQ0 682 aaPredicted RBP8.61□□□□□ -1.03
HMGB1-203ENST00000341423 SDHAF4Q5VUM1 108 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 FAM180AQ6UWF9 173 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 NT5DC3Q86UY8 548 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 MMAAQ8IVH4 418 aaKnown RBP8.61□□□□□ -1.03
HMGB1-203ENST00000341423 EID2Q8N6I1 236 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 POMGNT2Q8NAT1 580 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 USP7Q93009 1102 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 PANX3Q96QZ0 392 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 HOMER3Q9NSC5 361 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 PADI4Q9UM07 663 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 PVALEFA0A1B0GWK0 134 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 GRAP2O75791 330 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 INHBAP08476 426 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 AMPD1P23109 780 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 CORO1AP31146 461 aaKnown RBP8.61□□□□□ -1.03
HMGB1-203ENST00000341423 RPA3P35244 121 aaPredicted RBP8.61□□□□□ -1.03
HMGB1-203ENST00000341423 NEK3P51956 506 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 SLC20A2Q08357 652 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 MYBPC2Q14324 1141 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 IPMKQ8NFU5 416 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms