RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 LRRC32Q14392 662 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 FAXCQ5TGI0 409 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 RD3Q7Z3Z2 195 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 DDIASQ8IXT1 998 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.4□□□□□ -0.74
USP54-201ENST00000339859 SEMA4DQ92854 862 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 SDCCAG3Q96C92 435 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 LRRC1Q9BTT6 524 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 ALG13Q9NP73 1137 aaKnown RBP10.4□□□□□ -0.74
USP54-201ENST00000339859 RBM12Q9NTZ6 932 aaKnown RBP10.4□□□□□ -0.74
USP54-201ENST00000339859 MAFFQ9ULX9 164 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 IL1BP01584 269 aa10.4□□□□□ -0.75
USP54-201ENST00000339859 BRAFP15056 766 aa10.4□□□□□ -0.75
USP54-201ENST00000339859 NR1D1P20393 614 aa10.4□□□□□ -0.75
USP54-201ENST00000339859 C3orf62Q6ZUJ4 267 aa10.4□□□□□ -0.75
USP54-201ENST00000339859 NAT16Q8N8M0 369 aa10.4□□□□□ -0.75
USP54-201ENST00000339859 CXorf38Q8TB03 319 aa10.4□□□□□ -0.75
USP54-201ENST00000339859 ZNF670Q9BS34 389 aa10.4□□□□□ -0.75
USP54-201ENST00000339859 MIR1-1HGQ9H1L0 117 aa10.4□□□□□ -0.75
USP54-201ENST00000339859 CASS4Q9NQ75 786 aa10.4□□□□□ -0.75
USP54-201ENST00000339859 AASDHPPTQ9NRN7 309 aa10.4□□□□□ -0.75
USP54-201ENST00000339859 GIMAP4Q9NUV9 329 aa10.4□□□□□ -0.75
USP54-201ENST00000339859 WWOXQ9NZC7 414 aa10.4□□□□□ -0.75
USP54-201ENST00000339859 NDRG2Q9UN36 371 aaKnown RBP10.4□□□□□ -0.75
USP54-201ENST00000339859 NCANO14594 1321 aa10.4□□□□□ -0.75
USP54-201ENST00000339859 CES2O00748 559 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 ERVK-10P10266 1014 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 MYL2P10916 166 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 GRK3P35626 688 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 ART3Q13508 389 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 HABP4Q5JVS0 413 aaKnown RBP10.39□□□□□ -0.75
USP54-201ENST00000339859 EFL1Q7Z2Z2 1120 aaKnown RBP10.39□□□□□ -0.75
USP54-201ENST00000339859 RIBC1Q8N443 379 aaPredicted RBP10.39□□□□□ -0.75
USP54-201ENST00000339859 CELF5Q8N6W0 485 aaKnown RBP10.39□□□□□ -0.75
USP54-201ENST00000339859 WFIKKN2Q8TEU8 576 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 FGFBP2Q9BYJ0 223 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 NLNQ9BYT8 704 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 DPEP3Q9H4B8 488 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 SFXN1Q9H9B4 322 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 PCDH9Q9HC56 1237 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 RPS6KL1Q9Y6S9 549 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 COL24A1Q17RW2 1714 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 CCDC195A0A1B0GUA6 201 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 PAGE1O75459 146 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 CST3P01034 146 aaPredicted RBP10.39□□□□□ -0.75
USP54-201ENST00000339859 PFKPQ01813 784 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 MLLT1Q03111 559 aaPredicted RBP10.39□□□□□ -0.75
USP54-201ENST00000339859 TMC5Q6UXY8 1006 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 CACUL1Q86Y37 369 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 CCDC197Q8NCU1 140 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 SPATA20Q8TB22 786 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 HERC2P3Q9BVR0 1158 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 TRIM15Q9C019 465 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 KCNF1Q9H3M0 494 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 RAD51CO43502 376 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 ATP4AP20648 1035 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 TRIP4Q15650 581 aaPredicted RBP10.39□□□□□ -0.75
USP54-201ENST00000339859 FAM83EQ2M2I3 478 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 PARP15Q460N3 678 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 LYPLAL1Q5VWZ2 237 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 IGSF21Q96ID5 467 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 TOX2Q96NM4 488 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 ADAMTS10Q9H324 1103 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 ZDHHC4Q9NPG8 344 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 APOC4-APOC2K7ER74 178 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 RNF103O00237 685 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 O00370 1275 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 APOC2P02655 101 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 SNRPAP09012 282 aaKnown RBP10.39□□□□□ -0.75
USP54-201ENST00000339859 ZNF7P17097 686 aaPredicted RBP10.39□□□□□ -0.75
USP54-201ENST00000339859 HTR1BP28222 390 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 MZF1P28698 734 aaPredicted RBP10.39□□□□□ -0.75
USP54-201ENST00000339859 PCK1P35558 622 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 LIG3P49916 1009 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 ITGA9Q13797 1035 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 RCN2Q14257 317 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 SH2D4BQ5SQS7 431 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 AGAP9Q5VTM2 703 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 SNRNP25Q9BV90 132 aaKnown RBP10.39□□□□□ -0.75
USP54-201ENST00000339859 TRIM55Q9BYV6 548 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 EPS15L1Q9UBC2 864 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 APOBEC2Q9Y235 224 aaKnown RBP10.39□□□□□ -0.75
USP54-201ENST00000339859 EIF3HO15372 352 aaKnown RBP eCLIP10.39□□□□□ -0.75
USP54-201ENST00000339859 APOA4P06727 396 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 TACR2P21452 398 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 MNAT1P51948 309 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 CDH4P55283 916 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 WASHC5Q12768 1159 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 SF3A3Q12874 501 aaKnown RBP eCLIP10.39□□□□□ -0.75
USP54-201ENST00000339859 MAPK7Q13164 816 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 ZKSCAN8Q15776 578 aaPredicted RBP10.39□□□□□ -0.75
USP54-201ENST00000339859 MEA1Q16626 185 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 DBN1Q16643 649 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 ARHGAP17Q68EM7 881 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 TMEM121Q9BTD3 319 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 RABEP2Q9H5N1 569 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 NMRK1Q9NWW6 199 aa10.39□□□□□ -0.75
USP54-201ENST00000339859 TIMM44O43615 452 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 ACSL4O60488 711 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 CYP4F8P98187 520 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms