RNA–Protein interactions for RNA: ENST00000339162.11

PDLIM2-203, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,226 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-203ENST00000339162 MPP5Q8N3R9 675 aa23.05■■□□□ 1.28
PDLIM2-203ENST00000339162 BCAS4Q8TDM0 211 aa23.05■■□□□ 1.28
PDLIM2-203ENST00000339162 XPO6Q96QU8 1125 aaKnown RBP23.05■■□□□ 1.28
PDLIM2-203ENST00000339162 FERMT1Q9BQL6 677 aa23.05■■□□□ 1.28
PDLIM2-203ENST00000339162 MTPAPQ9NVV4 582 aaKnown RBP eCLIP23.05■■□□□ 1.28
PDLIM2-203ENST00000339162 KLHL8Q9P2G9 620 aaPredicted RBP23.05■■□□□ 1.28
PDLIM2-203ENST00000339162 MTRRQ9UBK8 725 aa23.05■■□□□ 1.28
PDLIM2-203ENST00000339162 TLR6Q9Y2C9 796 aa23.05■■□□□ 1.28
PDLIM2-203ENST00000339162 COL4A6Q14031 1691 aa23.04■■□□□ 1.28
PDLIM2-203ENST00000339162 DFFAO00273 331 aa23.04■■□□□ 1.28
PDLIM2-203ENST00000339162 RTN3O95197 1032 aaPredicted RBP23.04■■□□□ 1.28
PDLIM2-203ENST00000339162 SERPINB6P35237 376 aa23.04■■□□□ 1.28
PDLIM2-203ENST00000339162 TBX4P57082 545 aa23.04■■□□□ 1.28
PDLIM2-203ENST00000339162 GALNT2Q10471 571 aa23.04■■□□□ 1.28
PDLIM2-203ENST00000339162 ZSCAN26Q16670 478 aa23.04■■□□□ 1.28
PDLIM2-203ENST00000339162 C10orf120Q5SQS8 335 aa23.04■■□□□ 1.28
PDLIM2-203ENST00000339162 SLC8B1Q6J4K2 584 aa23.04■■□□□ 1.28
PDLIM2-203ENST00000339162 MAML1Q92585 1016 aa23.04■■□□□ 1.28
PDLIM2-203ENST00000339162 AGAP3Q96P47 875 aa23.04■■□□□ 1.28
PDLIM2-203ENST00000339162 CNOT10Q9H9A5 744 aaKnown RBP23.04■■□□□ 1.28
PDLIM2-203ENST00000339162 TLR8Q9NR97 1041 aaKnown RBP23.04■■□□□ 1.28
PDLIM2-203ENST00000339162 TPSB2P20231 275 aa23.04■■□□□ 1.28
PDLIM2-203ENST00000339162 ATP5DP30049 168 aa23.04■■□□□ 1.28
PDLIM2-203ENST00000339162 TUBP50607 506 aa23.04■■□□□ 1.28
PDLIM2-203ENST00000339162 ZNF135P52742 658 aaPredicted RBP23.04■■□□□ 1.28
PDLIM2-203ENST00000339162 ZBTB17Q13105 803 aa23.04■■□□□ 1.28
PDLIM2-203ENST00000339162 OLIG2Q13516 323 aa23.04■■□□□ 1.28
PDLIM2-203ENST00000339162 SPARCL1Q14515 664 aa23.04■■□□□ 1.28
PDLIM2-203ENST00000339162 TPSAB1Q15661 275 aa23.04■■□□□ 1.28
PDLIM2-203ENST00000339162 PIK3R6Q5UE93 754 aa23.04■■□□□ 1.28
PDLIM2-203ENST00000339162 MSANTD2Q6P1R3 559 aa23.04■■□□□ 1.28
PDLIM2-203ENST00000339162 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP23.04■■□□□ 1.28
PDLIM2-203ENST00000339162 MCUQ8NE86 351 aa23.04■■□□□ 1.28
PDLIM2-203ENST00000339162 SLC39A13Q96H72 371 aa23.04■■□□□ 1.28
PDLIM2-203ENST00000339162 SPATA17Q96L03 361 aa23.04■■□□□ 1.28
PDLIM2-203ENST00000339162 CLSTN3Q9BQT9 956 aa23.04■■□□□ 1.28
PDLIM2-203ENST00000339162 CCSER2Q9H7U1 834 aa23.04■■□□□ 1.28
PDLIM2-203ENST00000339162 KCNK9Q9NPC2 374 aa23.04■■□□□ 1.28
PDLIM2-203ENST00000339162 PLXNA3P51805 1871 aa23.03■■□□□ 1.28
PDLIM2-203ENST00000339162 TCRBV9S1A1TA0A576 114 aa23.03■■□□□ 1.28
PDLIM2-203ENST00000339162 A6NNZ2 444 aa23.03■■□□□ 1.28
PDLIM2-203ENST00000339162 GEMIN4P57678 1058 aaKnown RBP23.03■■□□□ 1.28
PDLIM2-203ENST00000339162 PKN2Q16513 984 aaKnown RBP23.03■■□□□ 1.28
PDLIM2-203ENST00000339162 TUBB8Q3ZCM7 444 aa23.03■■□□□ 1.28
PDLIM2-203ENST00000339162 RNF168Q8IYW5 571 aaPredicted RBP23.03■■□□□ 1.28
PDLIM2-203ENST00000339162 MGARPQ8TDB4 240 aa23.03■■□□□ 1.28
PDLIM2-203ENST00000339162 FAM107BQ9H098 131 aa23.03■■□□□ 1.28
PDLIM2-203ENST00000339162 ACSS3Q9H6R3 686 aa23.03■■□□□ 1.28
PDLIM2-203ENST00000339162 KIF9Q9HAQ2 790 aa23.03■■□□□ 1.28
PDLIM2-203ENST00000339162 ZC3H7BQ9UGR2 993 aaKnown RBP23.03■■□□□ 1.28
PDLIM2-203ENST00000339162 VANGL2Q9ULK5 521 aa23.03■■□□□ 1.28
PDLIM2-203ENST00000339162 MAD1L1Q9Y6D9 718 aa23.03■■□□□ 1.28
PDLIM2-203ENST00000339162 SLC38A8A6NNN8 435 aa23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 RASA4BC9J798 803 aa23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 E9PAM4 449 aa23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 NCAM2O15394 837 aa23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 RASA4O43374 803 aa23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 TIMP1P01033 207 aa23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 MX2P20592 715 aa23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 FDFT1P37268 417 aa23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 RPL10AP62906 217 aaKnown RBP23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 SMARCB1Q12824 385 aa23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 BTG3Q14201 252 aaPredicted RBP23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 MANEALQ5VSG8 457 aa23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 ARMC5Q96C12 935 aa23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 ZNF689Q96CS4 500 aaPredicted RBP23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 HDAC11Q96DB2 347 aa23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 TBC1D31Q96DN5 1066 aa23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 MLXIPLQ9NP71 852 aa23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 MARCH2Q9P0N8 246 aa23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 RAD54BQ9Y620 910 aa23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 ABHD14A-ACY1A0A1B0GW23 586 aa23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 TMEM120BA0PK00 339 aa23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 ZBTB24O43167 697 aaPredicted RBP23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 BRAFP15056 766 aa23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 RAG1P15918 1043 aa23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 ATP2A2P16615 1042 aaKnown RBP23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 CRADDP78560 199 aa23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 LRRC14Q15048 493 aa23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 PARP6Q2NL67 630 aa23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 TADA2BQ86TJ2 420 aa23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 PRPF39Q86UA1 669 aaKnown RBP23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 AUTS2Q8WXX7 1259 aa23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 SIGLEC10Q96LC7 697 aa23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 PAFAH2Q99487 392 aa23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 FRMD8Q9BZ67 464 aaPredicted RBP23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 PLAC1Q9HBJ0 212 aa23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 CLIC5Q9NZA1 410 aa23.02■■□□□ 1.28
PDLIM2-203ENST00000339162 SEC24AO95486 1093 aa23.01■■□□□ 1.27
PDLIM2-203ENST00000339162 MAGEA3P43357 314 aa23.01■■□□□ 1.27
PDLIM2-203ENST00000339162 MLLT6P55198 1093 aaPredicted RBP23.01■■□□□ 1.27
PDLIM2-203ENST00000339162 WDR5P61964 334 aaKnown RBP23.01■■□□□ 1.27
PDLIM2-203ENST00000339162 MPP2Q14168 576 aa23.01■■□□□ 1.27
PDLIM2-203ENST00000339162 KBTBD12Q3ZCT8 623 aa23.01■■□□□ 1.27
PDLIM2-203ENST00000339162 OTOP2Q7RTS6 562 aa23.01■■□□□ 1.27
PDLIM2-203ENST00000339162 USP33Q8TEY7 942 aa23.01■■□□□ 1.27
PDLIM2-203ENST00000339162 C2orf15Q8WU43 125 aaKnown RBP23.01■■□□□ 1.27
PDLIM2-203ENST00000339162 EPN3Q9H201 632 aa23.01■■□□□ 1.27
PDLIM2-203ENST00000339162 SHROOM3Q8TF72 1996 aa23.01■■□□□ 1.27
PDLIM2-203ENST00000339162 SLC12A8A0AV02 714 aa23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms