RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 KCNH4Q9UQ05 1017 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 ZNF142P52746 1687 aaPredicted RBP10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 RGSL1A5PLK6 1076 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 F5H5T6 163 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 GPR182O15218 404 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 MLYCDO95822 493 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 CETPP11597 493 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 VCLP18206 1134 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 CCR1P32246 355 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 PTPN7P35236 360 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 NCALDP61601 193 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 SLC6A3Q01959 620 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 TGM3Q08188 693 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 FBXO47Q5MNV8 452 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 IYDQ6PHW0 289 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 TSPAN14Q8NG11 270 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 TBC1D10AQ9BXI6 508 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 RPS6KA6Q9UK32 745 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 MED1Q15648 1581 aaPredicted RBP10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 KBTBD13C9JR72 458 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 CLCN2P51788 898 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 NEK3P51956 506 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 ANGEL2Q5VTE6 544 aaKnown RBP10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 BROXQ5VW32 411 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 BSNDQ8WZ55 320 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 LENG1Q96BZ8 264 aaPredicted RBP10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 DGCR14Q96DF8 476 aaKnown RBP10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 VCAM1P19320 739 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 LRRN4CLQ8ND94 238 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 RXFP2Q8WXD0 754 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 SERPINB11Q96P15 392 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 KLF6Q99612 283 aaPredicted RBP10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 KCTD10Q9H3F6 313 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 UMODL1Q5DID0 1318 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 PHGDHO43175 533 aaKnown RBP10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 KDELR1P24390 212 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 GABRB2P47870 512 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 CCT8P50990 548 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 PLGRKTQ9HBL7 147 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 CRLS1Q9UJA2 301 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 RAD51BO15315 384 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 TADA2AO75478 443 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 MOCS2O96007 188 aaPredicted RBP10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 IDO1P14902 403 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 HPCAL1P37235 193 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 LAMTOR4Q0VGL1 99 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 ZNF544Q6NX49 715 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 IFNEQ86WN2 208 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 AK5Q9Y6K8 562 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 AP1G2O75843 785 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 C7orf26Q96N11 449 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 KRT84Q9NSB2 600 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 ZNF180Q9UJW8 692 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 PDE2AO00408 941 aaPredicted RBP10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 NR5A2O00482 541 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 PMM2O15305 246 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 AGKQ53H12 422 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 NAIF1Q69YI7 327 aaPredicted RBP10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 DHRSXQ8N5I4 330 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 COLGALT1Q8NBJ5 622 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 C19orf18Q8NEA5 215 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 ST13P5Q8NFI4 369 aaPredicted RBP10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 Q96MT0 163 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 PORCNQ9H237 461 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 SERPINF2P08697 491 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 MAPK8P45983 427 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 ADARP55265 1226 aaKnown RBP10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 YWHAZP63104 245 aaKnown RBP10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 RNF217Q8TC41 542 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 DNAJC19Q96DA6 116 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 WDR41Q9HAD4 459 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 SCUBE2Q9NQ36 999 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 RAD18Q9NS91 495 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 SPACA6W5XKT8 324 aa10.5□□□□□ -0.73
CCDC88A-202ENST00000336838 ST8SIA6P61647 398 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 TNK2Q07912 1038 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 PLD1Q13393 1074 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 NEK10Q6ZWH5 1172 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 BTBD9Q96Q07 612 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 PPP1R16BQ96T49 567 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 BBS2Q9BXC9 721 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 GGA3Q9NZ52 723 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 ASTN1O14525 1302 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 CLOCKO15516 846 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 MAGEC1O60732 1142 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 TFE3P19532 575 aaPredicted RBP10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 RPA3P35244 121 aaPredicted RBP10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 PPP1R15BQ5SWA1 713 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 IL31Q6EBC2 164 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 HERC6Q8IVU3 1022 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 SLC16A10Q8TF71 515 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 DNPEPQ9ULA0 475 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 A0A096LPK6 155 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 ALOX15BO15296 676 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 CYTH3O43739 400 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 RTN3O95197 1032 aaPredicted RBP10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 GNA13Q14344 377 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 TRABD2AQ86V40 505 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 NMD3Q96D46 503 aaKnown RBP10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 LHX5Q9H2C1 402 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms