RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 INVSQ9Y283 1065 aa16.36■□□□□ 0.21
CLN3-201ENST00000333496 NYNRINQ9P2P1 1898 aaKnown RBP16.36■□□□□ 0.21
CLN3-201ENST00000333496 TNRC6BQ9UPQ9 1833 aaKnown RBP16.36■□□□□ 0.21
CLN3-201ENST00000333496 TYW5A2RUC4 315 aaKnown RBP16.35■□□□□ 0.21
CLN3-201ENST00000333496 C2CD4BA6NLJ0 364 aa16.35■□□□□ 0.21
CLN3-201ENST00000333496 TIMM44O43615 452 aa16.35■□□□□ 0.21
CLN3-201ENST00000333496 ALDH1A2O94788 518 aa16.35■□□□□ 0.21
CLN3-201ENST00000333496 ENDOD1O94919 500 aa16.35■□□□□ 0.21
CLN3-201ENST00000333496 LUC7L3O95232 432 aaKnown RBP16.35■□□□□ 0.21
CLN3-201ENST00000333496 F9P00740 461 aa16.35■□□□□ 0.21
CLN3-201ENST00000333496 IRAK1P51617 712 aa16.35■□□□□ 0.21
CLN3-201ENST00000333496 AUHQ13825 339 aaKnown RBP16.35■□□□□ 0.21
CLN3-201ENST00000333496 ASIC2Q16515 512 aa16.35■□□□□ 0.21
CLN3-201ENST00000333496 PTPRNQ16849 979 aa16.35■□□□□ 0.21
CLN3-201ENST00000333496 FUT11Q495W5 492 aa16.35■□□□□ 0.21
CLN3-201ENST00000333496 HS1BP3Q53T59 392 aa16.35■□□□□ 0.21
CLN3-201ENST00000333496 BRMS1LQ5PSV4 323 aa16.35■□□□□ 0.21
CLN3-201ENST00000333496 ARTNQ5T4W7 220 aa16.35■□□□□ 0.21
CLN3-201ENST00000333496 SFMBT2Q5VUG0 894 aa16.35■□□□□ 0.21
CLN3-201ENST00000333496 MBLAC2Q68D91 279 aa16.35■□□□□ 0.21
CLN3-201ENST00000333496 SDE2Q6IQ49 451 aa16.35■□□□□ 0.21
CLN3-201ENST00000333496 ACAD10Q6JQN1 1059 aa16.35■□□□□ 0.21
CLN3-201ENST00000333496 CEP68Q76N32 757 aa16.35■□□□□ 0.21
CLN3-201ENST00000333496 ZNF571Q7Z3V5 609 aaPredicted RBP16.35■□□□□ 0.21
CLN3-201ENST00000333496 C14orf80Q86SX3 495 aa16.35■□□□□ 0.21
CLN3-201ENST00000333496 KBTBD6Q86V97 674 aa16.35■□□□□ 0.21
CLN3-201ENST00000333496 CIR1Q86X95 450 aaPredicted RBP16.35■□□□□ 0.21
CLN3-201ENST00000333496 AHI1Q8N157 1196 aa16.35■□□□□ 0.21
CLN3-201ENST00000333496 FAM160A2Q8N612 972 aaPredicted RBP16.35■□□□□ 0.21
CLN3-201ENST00000333496 RNF214Q8ND24 703 aa16.35■□□□□ 0.21
CLN3-201ENST00000333496 CYB5D2Q8WUJ1 264 aa16.35■□□□□ 0.21
CLN3-201ENST00000333496 RXFP2Q8WXD0 754 aa16.35■□□□□ 0.21
CLN3-201ENST00000333496 NUP58Q9BVL2 599 aa16.35■□□□□ 0.21
CLN3-201ENST00000333496 NPC1O15118 1278 aa16.34■□□□□ 0.21
CLN3-201ENST00000333496 CALB1P05937 261 aa16.34■□□□□ 0.21
CLN3-201ENST00000333496 TNFAIP3P21580 790 aa16.34■□□□□ 0.21
CLN3-201ENST00000333496 RFC1P35251 1148 aaPredicted RBP16.34■□□□□ 0.21
CLN3-201ENST00000333496 ATP11AP98196 1134 aa16.34■□□□□ 0.21
CLN3-201ENST00000333496 C1QBPQ07021 282 aaKnown RBP16.34■□□□□ 0.21
CLN3-201ENST00000333496 C15orf59Q2T9L4 293 aaPredicted RBP16.34■□□□□ 0.21
CLN3-201ENST00000333496 CCDC14Q49A88 953 aa16.34■□□□□ 0.21
CLN3-201ENST00000333496 SH3PXD2AQ5TCZ1 1133 aa16.34■□□□□ 0.21
CLN3-201ENST00000333496 LAIR1Q6GTX8 287 aa16.34■□□□□ 0.21
CLN3-201ENST00000333496 ZNF683Q8IZ20 524 aa16.34■□□□□ 0.21
CLN3-201ENST00000333496 MCOLN2Q8IZK6 566 aa16.34■□□□□ 0.21
CLN3-201ENST00000333496 FRMD1Q8N878 549 aa16.34■□□□□ 0.21
CLN3-201ENST00000333496 C3orf20Q8ND61 904 aa16.34■□□□□ 0.21
CLN3-201ENST00000333496 RLN3Q8WXF3 142 aa16.34■□□□□ 0.21
CLN3-201ENST00000333496 ZC3H10Q96K80 434 aaKnown RBP16.34■□□□□ 0.21
CLN3-201ENST00000333496 XPO4Q9C0E2 1151 aaKnown RBP16.34■□□□□ 0.21
CLN3-201ENST00000333496 SIK2Q9H0K1 926 aa16.34■□□□□ 0.21
CLN3-201ENST00000333496 DUSP15Q9H1R2 295 aaPredicted RBP16.34■□□□□ 0.21
CLN3-201ENST00000333496 RAB23Q9ULC3 237 aa16.34■□□□□ 0.21
CLN3-201ENST00000333496 VANGL2Q9ULK5 521 aa16.34■□□□□ 0.21
CLN3-201ENST00000333496 SNX10Q9Y5X0 201 aa16.34■□□□□ 0.21
CLN3-201ENST00000333496 A0A1W2PQJ5 194 aa16.34■□□□□ 0.21
CLN3-201ENST00000333496 H0Y626 953 aa16.34■□□□□ 0.21
CLN3-201ENST00000333496 KRT3P12035 628 aa16.34■□□□□ 0.21
CLN3-201ENST00000333496 SKILP12757 684 aa16.34■□□□□ 0.21
CLN3-201ENST00000333496 PDGFRAP16234 1089 aa16.34■□□□□ 0.21
CLN3-201ENST00000333496 PRKCHP24723 683 aa16.34■□□□□ 0.21
CLN3-201ENST00000333496 MTA1Q13330 715 aa16.34■□□□□ 0.21
CLN3-201ENST00000333496 CDH18Q13634 790 aa16.34■□□□□ 0.21
CLN3-201ENST00000333496 PLK5Q496M5 336 aa16.34■□□□□ 0.21
CLN3-201ENST00000333496 C5orf22Q49AR2 442 aa16.34■□□□□ 0.21
CLN3-201ENST00000333496 SND1Q7KZF4 910 aaKnown RBP eCLIP16.34■□□□□ 0.211e-7■■■□□ 15.8
CLN3-201ENST00000333496 DNAAF5Q86Y56 855 aa16.34■□□□□ 0.21
CLN3-201ENST00000333496 CCAR2Q8N163 923 aaKnown RBP16.34■□□□□ 0.21
CLN3-201ENST00000333496 ZNF557Q8N988 423 aaPredicted RBP16.34■□□□□ 0.21
CLN3-201ENST00000333496 SLC6A17Q9H1V8 727 aa16.34■□□□□ 0.21
CLN3-201ENST00000333496 TMEM245Q9H330 911 aa16.34■□□□□ 0.21
CLN3-201ENST00000333496 BCCIPQ9P287 314 aaKnown RBP eCLIP16.34■□□□□ 0.21
CLN3-201ENST00000333496 NCDNQ9UBB6 729 aa16.34■□□□□ 0.21
CLN3-201ENST00000333496 GVINP1Q7Z2Y8 2422 aa16.33■□□□□ 0.21
CLN3-201ENST00000333496 A0A1B0GVM2 712 aa16.33■□□□□ 0.2
CLN3-201ENST00000333496 TCAF2A6NFQ2 919 aa16.33■□□□□ 0.2
CLN3-201ENST00000333496 SIGLEC16A6NMB1 481 aa16.33■□□□□ 0.2
CLN3-201ENST00000333496 DDX3XO00571 662 aaKnown RBP eCLIP16.33■□□□□ 0.21e-10■■■□□ 15.1
CLN3-201ENST00000333496 NDUFV2P19404 249 aa16.33■□□□□ 0.2
CLN3-201ENST00000333496 BCKDHBP21953 392 aa16.33■□□□□ 0.2
CLN3-201ENST00000333496 TGM1P22735 817 aa16.33■□□□□ 0.2
CLN3-201ENST00000333496 RDXP35241 583 aaKnown RBP16.33■□□□□ 0.2
CLN3-201ENST00000333496 P2RY2P41231 377 aa16.33■□□□□ 0.2
CLN3-201ENST00000333496 PTPN9P43378 593 aa16.33■□□□□ 0.2
CLN3-201ENST00000333496 KLHL30Q0D2K2 578 aa16.33■□□□□ 0.2
CLN3-201ENST00000333496 CDO1Q16878 200 aa16.33■□□□□ 0.2
CLN3-201ENST00000333496 USP39Q53GS9 565 aaKnown RBP16.33■□□□□ 0.2
CLN3-201ENST00000333496 PPP1R15BQ5SWA1 713 aa16.33■□□□□ 0.2
CLN3-201ENST00000333496 HGSNATQ68CP4 663 aa16.33■□□□□ 0.2
CLN3-201ENST00000333496 WDR59Q6PJI9 974 aa16.33■□□□□ 0.2
CLN3-201ENST00000333496 FAM131BQ86XD5 332 aa16.33■□□□□ 0.2
CLN3-201ENST00000333496 PGBD3Q8N328 593 aa16.33■□□□□ 0.2
CLN3-201ENST00000333496 CENPIQ92674 756 aaPredicted RBP16.33■□□□□ 0.2
CLN3-201ENST00000333496 TTC17Q96AE7 1141 aa16.33■□□□□ 0.2
CLN3-201ENST00000333496 MYO19Q96H55 970 aa16.33■□□□□ 0.2
CLN3-201ENST00000333496 MRGPRX1Q96LB2 322 aa16.33■□□□□ 0.2
CLN3-201ENST00000333496 RPRD1AQ96P16 312 aaPredicted RBP16.33■□□□□ 0.2
CLN3-201ENST00000333496 HINFPQ9BQA5 517 aa16.33■□□□□ 0.2
CLN3-201ENST00000333496 SELENOOQ9BVL4 669 aa16.33■□□□□ 0.2
CLN3-201ENST00000333496 CAPN11Q9UMQ6 739 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms