RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 NOS2P35228 1153 aa16.87■□□□□ 0.29
LSM1-201ENST00000311351 MATKP42679 507 aa16.87■□□□□ 0.29
LSM1-201ENST00000311351 GABRB2P47870 512 aa16.87■□□□□ 0.29
LSM1-201ENST00000311351 NUMBP49757 651 aa16.87■□□□□ 0.29
LSM1-201ENST00000311351 SULT1E1P49888 294 aa16.87■□□□□ 0.29
LSM1-201ENST00000311351 COPAP53621 1224 aa16.87■□□□□ 0.29
LSM1-201ENST00000311351 SNX16P57768 344 aa16.87■□□□□ 0.29
LSM1-201ENST00000311351 FMO1Q01740 532 aa16.87■□□□□ 0.29
LSM1-201ENST00000311351 CENPCQ03188 943 aa16.87■□□□□ 0.29
LSM1-201ENST00000311351 ERICH1Q86X53 443 aa16.87■□□□□ 0.29
LSM1-201ENST00000311351 ZDHHC17Q8IUH5 632 aa16.87■□□□□ 0.29
LSM1-201ENST00000311351 FIBINQ8TAL6 211 aa16.87■□□□□ 0.29
LSM1-201ENST00000311351 CPA5Q8WXQ8 436 aa16.87■□□□□ 0.29
LSM1-201ENST00000311351 C18orf8Q96DM3 657 aa16.87■□□□□ 0.29
LSM1-201ENST00000311351 NPY6RQ99463 290 aa16.87■□□□□ 0.29
LSM1-201ENST00000311351 PRMT1Q99873 361 aaKnown RBP16.87■□□□□ 0.29
LSM1-201ENST00000311351 PRDM16Q9HAZ2 1276 aa16.87■□□□□ 0.29
LSM1-201ENST00000311351 PIGVQ9NUD9 493 aa16.87■□□□□ 0.29
LSM1-201ENST00000311351 DCDC2BA2VCK2 349 aa16.86■□□□□ 0.29
LSM1-201ENST00000311351 SLC30A4O14863 429 aa16.86■□□□□ 0.29
LSM1-201ENST00000311351 AP5Z1O43299 807 aa16.86■□□□□ 0.29
LSM1-201ENST00000311351 DLDP09622 509 aaKnown RBP16.86■□□□□ 0.29
LSM1-201ENST00000311351 ITPKAP23677 461 aa16.86■□□□□ 0.29
LSM1-201ENST00000311351 FLT3P36888 993 aa16.86■□□□□ 0.29
LSM1-201ENST00000311351 CSKP41240 450 aa16.86■□□□□ 0.29
LSM1-201ENST00000311351 IRAK1P51617 712 aa16.86■□□□□ 0.29
LSM1-201ENST00000311351 CDR2Q01850 454 aa16.86■□□□□ 0.29
LSM1-201ENST00000311351 LYSMD4Q5XG99 296 aa16.86■□□□□ 0.29
LSM1-201ENST00000311351 TRNP1Q6NT89 227 aa16.86■□□□□ 0.29
LSM1-201ENST00000311351 SLC36A4Q6YBV0 504 aa16.86■□□□□ 0.29
LSM1-201ENST00000311351 ERMP1Q7Z2K6 904 aa16.86■□□□□ 0.29
LSM1-201ENST00000311351 DHX40Q8IX18 779 aaKnown RBP16.86■□□□□ 0.29
LSM1-201ENST00000311351 ZNF557Q8N988 423 aaPredicted RBP16.86■□□□□ 0.29
LSM1-201ENST00000311351 NEK11Q8NG66 645 aa16.86■□□□□ 0.29
LSM1-201ENST00000311351 RTKNQ9BST9 563 aa16.86■□□□□ 0.29
LSM1-201ENST00000311351 EDEM2Q9BV94 578 aa16.86■□□□□ 0.29
LSM1-201ENST00000311351 TMEM245Q9H330 911 aa16.86■□□□□ 0.29
LSM1-201ENST00000311351 MTG2Q9H4K7 406 aa16.86■□□□□ 0.29
LSM1-201ENST00000311351 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.86■□□□□ 0.29
LSM1-201ENST00000311351 SLC12A6Q9UHW9 1150 aa16.86■□□□□ 0.29
LSM1-201ENST00000311351 ADAMTS9Q9P2N4 1935 aa16.86■□□□□ 0.29
LSM1-201ENST00000311351 LNP1A1A4G5 178 aa16.85■□□□□ 0.29
LSM1-201ENST00000311351 H0Y626 953 aa16.85■□□□□ 0.29
LSM1-201ENST00000311351 CYP1A1P04798 512 aaPredicted RBP16.85■□□□□ 0.29
LSM1-201ENST00000311351 ATP5BP06576 529 aaKnown RBP16.85■□□□□ 0.29
LSM1-201ENST00000311351 SLC2A3P11169 496 aa16.85■□□□□ 0.29
LSM1-201ENST00000311351 SDHBP21912 280 aa16.85■□□□□ 0.29
LSM1-201ENST00000311351 STAT1P42224 750 aa16.85■□□□□ 0.29
LSM1-201ENST00000311351 CTSOP43234 321 aaPredicted RBP16.85■□□□□ 0.29
LSM1-201ENST00000311351 CAMK2GQ13555 558 aaPredicted RBP16.85■□□□□ 0.29
LSM1-201ENST00000311351 E2F5Q15329 346 aa16.85■□□□□ 0.29
LSM1-201ENST00000311351 PITRM1Q5JRX3 1037 aa16.85■□□□□ 0.29
LSM1-201ENST00000311351 FBXL22Q6P050 247 aa16.85■□□□□ 0.29
LSM1-201ENST00000311351 ZNF677Q86XU0 584 aa16.85■□□□□ 0.29
LSM1-201ENST00000311351 TMPRSS6Q8IU80 811 aa16.85■□□□□ 0.29
LSM1-201ENST00000311351 SLC41A1Q8IVJ1 513 aa16.85■□□□□ 0.29
LSM1-201ENST00000311351 CCDC117Q8IWD4 279 aaPredicted RBP16.85■□□□□ 0.29
LSM1-201ENST00000311351 CCAR2Q8N163 923 aaKnown RBP16.85■□□□□ 0.29
LSM1-201ENST00000311351 SIPA1Q96FS4 1042 aa16.85■□□□□ 0.29
LSM1-201ENST00000311351 MYO19Q96H55 970 aa16.85■□□□□ 0.29
LSM1-201ENST00000311351 HSPA12BQ96MM6 686 aa16.85■□□□□ 0.29
LSM1-201ENST00000311351 ERGIC2Q96RQ1 377 aa16.85■□□□□ 0.29
LSM1-201ENST00000311351 TBCBQ99426 244 aa16.85■□□□□ 0.29
LSM1-201ENST00000311351 NAT10Q9H0A0 1025 aaKnown RBP16.85■□□□□ 0.29
LSM1-201ENST00000311351 ANLNQ9NQW6 1124 aa16.85■□□□□ 0.29
LSM1-201ENST00000311351 TMEM74BQ9NUR3 256 aa16.85■□□□□ 0.29
LSM1-201ENST00000311351 USP36Q9P275 1121 aaKnown RBP16.85■□□□□ 0.29
LSM1-201ENST00000311351 STAP1Q9ULZ2 295 aa16.85■□□□□ 0.29
LSM1-201ENST00000311351 PLA2G4CQ9UP65 541 aa16.85■□□□□ 0.29
LSM1-201ENST00000311351 DAAM1Q9Y4D1 1078 aa16.85■□□□□ 0.29
LSM1-201ENST00000311351 HS3ST4Q9Y661 456 aa16.85■□□□□ 0.29
LSM1-201ENST00000311351 MED19A0JLT2 244 aaPredicted RBP16.84■□□□□ 0.29
LSM1-201ENST00000311351 LRRC10BA6NIK2 292 aa16.84■□□□□ 0.29
LSM1-201ENST00000311351 I6L893 689 aaPredicted RBP16.84■□□□□ 0.29
LSM1-201ENST00000311351 TEX33O43247 280 aa16.84■□□□□ 0.29
LSM1-201ENST00000311351 PAGE1O75459 146 aa16.84■□□□□ 0.29
LSM1-201ENST00000311351 ADCY5O95622 1261 aa16.84■□□□□ 0.29
LSM1-201ENST00000311351 SCNN1AP37088 669 aa16.84■□□□□ 0.29
LSM1-201ENST00000311351 RABGAP1LQ5R372 815 aa16.84■□□□□ 0.29
LSM1-201ENST00000311351 PHLDB2Q86SQ0 1253 aa16.84■□□□□ 0.29
LSM1-201ENST00000311351 APCDD1Q8J025 514 aa16.84■□□□□ 0.29
LSM1-201ENST00000311351 MSANTD4Q8NCY6 345 aa16.84■□□□□ 0.29
LSM1-201ENST00000311351 OR2T3Q8NH03 318 aa16.84■□□□□ 0.29
LSM1-201ENST00000311351 PRCCQ92733 491 aaPredicted RBP16.84■□□□□ 0.29
LSM1-201ENST00000311351 IGSF8Q969P0 613 aa16.84■□□□□ 0.29
LSM1-201ENST00000311351 TTC17Q96AE7 1141 aa16.84■□□□□ 0.29
LSM1-201ENST00000311351 MRGPRX3Q96LB0 322 aa16.84■□□□□ 0.29
LSM1-201ENST00000311351 RPRD1AQ96P16 312 aaPredicted RBP16.84■□□□□ 0.29
LSM1-201ENST00000311351 BPIFA3Q9BQP9 254 aa16.84■□□□□ 0.29
LSM1-201ENST00000311351 C11orf70Q9BRQ4 267 aa16.84■□□□□ 0.29
LSM1-201ENST00000311351 METTL5Q9NRN9 209 aaKnown RBP16.84■□□□□ 0.29
LSM1-201ENST00000311351 TMPRSS4Q9NRS4 437 aa16.84■□□□□ 0.29
LSM1-201ENST00000311351 VANGL2Q9ULK5 521 aa16.84■□□□□ 0.29
LSM1-201ENST00000311351 SNX10Q9Y5X0 201 aa16.84■□□□□ 0.29
LSM1-201ENST00000311351 A0A1B0GVM2 712 aa16.83■□□□□ 0.28
LSM1-201ENST00000311351 TCAF2A6NFQ2 919 aa16.83■□□□□ 0.28
LSM1-201ENST00000311351 KHNYNO15037 678 aaKnown RBP16.83■□□□□ 0.28
LSM1-201ENST00000311351 PDGFRAP16234 1089 aa16.83■□□□□ 0.28
LSM1-201ENST00000311351 CD6P30203 668 aa16.83■□□□□ 0.28
LSM1-201ENST00000311351 TPMTP51580 245 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms