RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 SLC16A3O15427 465 aaKnown RBP15.34■□□□□ 0.05
CCDC88B-201ENST00000301897 MSI1O43347 362 aaKnown RBP15.34■□□□□ 0.05
CCDC88B-201ENST00000301897 ACSL4O60488 711 aa15.34■□□□□ 0.05
CCDC88B-201ENST00000301897 FBXO21O94952 628 aa15.34■□□□□ 0.05
CCDC88B-201ENST00000301897 MOCS3O95396 460 aa15.34■□□□□ 0.05
CCDC88B-201ENST00000301897 JUPP14923 745 aa15.34■□□□□ 0.05
CCDC88B-201ENST00000301897 CD70P32970 193 aa15.34■□□□□ 0.05
CCDC88B-201ENST00000301897 ARRB1P49407 418 aaPredicted RBP15.34■□□□□ 0.05
CCDC88B-201ENST00000301897 CCR5P51681 352 aa15.34■□□□□ 0.05
CCDC88B-201ENST00000301897 GALCP54803 685 aa15.34■□□□□ 0.05
CCDC88B-201ENST00000301897 KRT85P78386 507 aa15.34■□□□□ 0.05
CCDC88B-201ENST00000301897 PKP1Q13835 747 aa15.34■□□□□ 0.05
CCDC88B-201ENST00000301897 STILQ15468 1287 aa15.34■□□□□ 0.05
CCDC88B-201ENST00000301897 SLC45A4Q5BKX6 768 aa15.34■□□□□ 0.05
CCDC88B-201ENST00000301897 KCNT1Q5JUK3 1230 aa15.34■□□□□ 0.05
CCDC88B-201ENST00000301897 TCERG1LQ5VWI1 586 aa15.34■□□□□ 0.05
CCDC88B-201ENST00000301897 RFWD3Q6PCD5 774 aa15.34■□□□□ 0.05
CCDC88B-201ENST00000301897 LCLAT1Q6UWP7 414 aa15.34■□□□□ 0.05
CCDC88B-201ENST00000301897 LAYNQ6UX15 382 aa15.34■□□□□ 0.05
CCDC88B-201ENST00000301897 ZC3H3Q8IXZ2 948 aaKnown RBP15.34■□□□□ 0.05
CCDC88B-201ENST00000301897 OMDQ99983 421 aa15.34■□□□□ 0.05
CCDC88B-201ENST00000301897 GDF3Q9NR23 364 aa15.34■□□□□ 0.05
CCDC88B-201ENST00000301897 FAM47DPA6NHR8 397 aa15.33■□□□□ 0.04
CCDC88B-201ENST00000301897 TK2O00142 265 aa15.33■□□□□ 0.04
CCDC88B-201ENST00000301897 SIN3BO75182 1162 aa15.33■□□□□ 0.04
CCDC88B-201ENST00000301897 RFPL3O75679 317 aa15.33■□□□□ 0.04
CCDC88B-201ENST00000301897 LDOC1O95751 146 aaPredicted RBP15.33■□□□□ 0.04
CCDC88B-201ENST00000301897 LTFP02788 710 aa15.33■□□□□ 0.04
CCDC88B-201ENST00000301897 ITGAVP06756 1048 aa15.33■□□□□ 0.04
CCDC88B-201ENST00000301897 SRPRAP08240 638 aaKnown RBP15.33■□□□□ 0.04
CCDC88B-201ENST00000301897 PAEPP09466 180 aa15.33■□□□□ 0.04
CCDC88B-201ENST00000301897 PRR29P0C7W0 189 aa15.33■□□□□ 0.04
CCDC88B-201ENST00000301897 CD38P28907 300 aa15.33■□□□□ 0.04
CCDC88B-201ENST00000301897 CSKP41240 450 aa15.33■□□□□ 0.04
CCDC88B-201ENST00000301897 SGSHP51688 502 aa15.33■□□□□ 0.04
CCDC88B-201ENST00000301897 NDUFA8P51970 172 aa15.33■□□□□ 0.04
CCDC88B-201ENST00000301897 TBX4P57082 545 aa15.33■□□□□ 0.04
CCDC88B-201ENST00000301897 NNTQ13423 1086 aa15.33■□□□□ 0.04
CCDC88B-201ENST00000301897 CST6Q15828 149 aa15.33■□□□□ 0.04
CCDC88B-201ENST00000301897 PKDCCQ504Y2 493 aa15.33■□□□□ 0.04
CCDC88B-201ENST00000301897 FAM133BQ5BKY9 247 aaKnown RBP15.33■□□□□ 0.04
CCDC88B-201ENST00000301897 NCEH1Q6PIU2 408 aa15.33■□□□□ 0.04
CCDC88B-201ENST00000301897 MARCH9Q86YJ5 346 aa15.33■□□□□ 0.04
CCDC88B-201ENST00000301897 OXR1Q8N573 874 aa15.33■□□□□ 0.04
CCDC88B-201ENST00000301897 WFDC5Q8TCV5 224 aa15.33■□□□□ 0.04
CCDC88B-201ENST00000301897 CNDP2Q96KP4 475 aaKnown RBP15.33■□□□□ 0.04
CCDC88B-201ENST00000301897 AASDHPPTQ9NRN7 309 aa15.33■□□□□ 0.04
CCDC88B-201ENST00000301897 PLXNA2O75051 1894 aa15.33■□□□□ 0.04
CCDC88B-201ENST00000301897 SHROOM3Q8TF72 1996 aa15.33■□□□□ 0.04
CCDC88B-201ENST00000301897 EDDM13A0A1B0GTR0 161 aa15.32■□□□□ 0.04
CCDC88B-201ENST00000301897 PLK4O00444 970 aa15.32■□□□□ 0.04
CCDC88B-201ENST00000301897 RNASEH2AO75792 299 aaKnown RBP15.32■□□□□ 0.04
CCDC88B-201ENST00000301897 ADH1BP00325 375 aa15.32■□□□□ 0.04
CCDC88B-201ENST00000301897 LCP1P13796 627 aa15.32■□□□□ 0.04
CCDC88B-201ENST00000301897 IL9RQ01113 521 aa15.32■□□□□ 0.04
CCDC88B-201ENST00000301897 CDH18Q13634 790 aa15.32■□□□□ 0.04
CCDC88B-201ENST00000301897 DCAF17Q5H9S7 520 aaPredicted RBP15.32■□□□□ 0.04
CCDC88B-201ENST00000301897 KRBA2Q6ZNG9 492 aa15.32■□□□□ 0.04
CCDC88B-201ENST00000301897 LRRC69Q6ZNQ3 347 aa15.32■□□□□ 0.04
CCDC88B-201ENST00000301897 SND1Q7KZF4 910 aaKnown RBP eCLIP15.32■□□□□ 0.04
CCDC88B-201ENST00000301897 UBA3Q8TBC4 463 aa15.32■□□□□ 0.04
CCDC88B-201ENST00000301897 EEF2KMTQ96G04 330 aa15.32■□□□□ 0.04
CCDC88B-201ENST00000301897 MYO19Q96H55 970 aa15.32■□□□□ 0.04
CCDC88B-201ENST00000301897 LMLNQ96KR4 655 aa15.32■□□□□ 0.04
CCDC88B-201ENST00000301897 HSFY1Q96LI6 401 aa15.32■□□□□ 0.04
CCDC88B-201ENST00000301897 SLC6A18Q96N87 628 aa15.32■□□□□ 0.04
CCDC88B-201ENST00000301897 SERPINB11Q96P15 392 aa15.32■□□□□ 0.04
CCDC88B-201ENST00000301897 BBC3Q96PG8 261 aaPredicted RBP15.32■□□□□ 0.04
CCDC88B-201ENST00000301897 TSG101Q99816 390 aa15.32■□□□□ 0.04
CCDC88B-201ENST00000301897 TRIM62Q9BVG3 475 aa15.32■□□□□ 0.04
CCDC88B-201ENST00000301897 STIM2Q9P246 746 aa15.32■□□□□ 0.04
CCDC88B-201ENST00000301897 ASH1LQ9NR48 2969 aaKnown RBP15.31■□□□□ 0.04
CCDC88B-201ENST00000301897 ARID1BQ8NFD5 2236 aaPredicted RBP15.31■□□□□ 0.04
CCDC88B-201ENST00000301897 A0A1W2PP55 124 aa15.31■□□□□ 0.04
CCDC88B-201ENST00000301897 MID1O15344 667 aa15.31■□□□□ 0.04
CCDC88B-201ENST00000301897 RRP8O43159 456 aaKnown RBP15.31■□□□□ 0.04
CCDC88B-201ENST00000301897 SART1O43290 800 aaKnown RBP15.31■□□□□ 0.04
CCDC88B-201ENST00000301897 GOT1P17174 413 aa15.31■□□□□ 0.04
CCDC88B-201ENST00000301897 SLC6A4P31645 630 aa15.31■□□□□ 0.04
CCDC88B-201ENST00000301897 NUDT1P36639 197 aa15.31■□□□□ 0.04
CCDC88B-201ENST00000301897 FKBP3Q00688 224 aaKnown RBP15.31■□□□□ 0.04
CCDC88B-201ENST00000301897 ILKQ13418 452 aa15.31■□□□□ 0.04
CCDC88B-201ENST00000301897 CNGA2Q16280 664 aa15.31■□□□□ 0.04
CCDC88B-201ENST00000301897 CBWD6Q4V339 395 aa15.31■□□□□ 0.04
CCDC88B-201ENST00000301897 CBWD3Q5JTY5 395 aa15.31■□□□□ 0.04
CCDC88B-201ENST00000301897 CBWD5Q5RIA9 395 aa15.31■□□□□ 0.04
CCDC88B-201ENST00000301897 C9orf64Q5T6V5 341 aa15.31■□□□□ 0.04
CCDC88B-201ENST00000301897 RNF219Q5W0B1 726 aaPredicted RBP15.31■□□□□ 0.04
CCDC88B-201ENST00000301897 MMAAQ8IVH4 418 aaKnown RBP15.31■□□□□ 0.04
CCDC88B-201ENST00000301897 DHX40Q8IX18 779 aaKnown RBP15.31■□□□□ 0.04
CCDC88B-201ENST00000301897 SAP25Q8TEE9 199 aa15.31■□□□□ 0.04
CCDC88B-201ENST00000301897 SLC35F5Q8WV83 523 aa15.31■□□□□ 0.04
CCDC88B-201ENST00000301897 DCBLD2Q96PD2 775 aa15.31■□□□□ 0.04
CCDC88B-201ENST00000301897 GTPBP4Q9BZE4 634 aaKnown RBP15.31■□□□□ 0.04
CCDC88B-201ENST00000301897 NRSN2Q9GZP1 204 aa15.31■□□□□ 0.04
CCDC88B-201ENST00000301897 NEUROG2Q9H2A3 272 aa15.31■□□□□ 0.04
CCDC88B-201ENST00000301897 ERVMER34-1Q9H9K5 563 aa15.31■□□□□ 0.04
CCDC88B-201ENST00000301897 RMND1Q9NWS8 449 aa15.31■□□□□ 0.04
CCDC88B-201ENST00000301897 ERVW-1Q9UQF0 538 aa15.31■□□□□ 0.04
CCDC88B-201ENST00000301897 TLR6Q9Y2C9 796 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms