RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 BNIP1Q12981 228 aa17.31■□□□□ 0.36
CPSF4-201ENST00000292476 PSMD5Q16401 504 aa17.31■□□□□ 0.36
CPSF4-201ENST00000292476 GDAP1Q8TB36 358 aa17.31■□□□□ 0.36
CPSF4-201ENST00000292476 NDRG1Q92597 394 aaKnown RBP17.31■□□□□ 0.36
CPSF4-201ENST00000292476 TACO1Q9BSH4 297 aaKnown RBP17.31■□□□□ 0.36
CPSF4-201ENST00000292476 DHRS4Q9BTZ2 278 aa17.31■□□□□ 0.36
CPSF4-201ENST00000292476 HERC2P3Q9BVR0 1158 aa17.31■□□□□ 0.36
CPSF4-201ENST00000292476 PCDH18Q9HCL0 1135 aa17.31■□□□□ 0.36
CPSF4-201ENST00000292476 FZD10Q9ULW2 581 aa17.31■□□□□ 0.36
CPSF4-201ENST00000292476 SSX2IPQ9Y2D8 614 aa17.31■□□□□ 0.36
CPSF4-201ENST00000292476 PCDHB12Q9Y5F1 795 aa17.31■□□□□ 0.36
CPSF4-201ENST00000292476 MYO9BQ13459 2157 aa17.31■□□□□ 0.36
CPSF4-201ENST00000292476 PTPRDP23468 1912 aa17.3■□□□□ 0.36
CPSF4-201ENST00000292476 TMEM265A0A087WTH1 108 aa17.3■□□□□ 0.36
CPSF4-201ENST00000292476 MCF2LO15068 1137 aa17.3■□□□□ 0.36
CPSF4-201ENST00000292476 ZWINTO95229 277 aa17.3■□□□□ 0.36
CPSF4-201ENST00000292476 IFNB1P01574 187 aa17.3■□□□□ 0.36
CPSF4-201ENST00000292476 FYNP06241 537 aa17.3■□□□□ 0.36
CPSF4-201ENST00000292476 TGM2P21980 687 aa17.3■□□□□ 0.36
CPSF4-201ENST00000292476 STIP1P31948 543 aaKnown RBP17.3■□□□□ 0.36
CPSF4-201ENST00000292476 GLUD2P49448 558 aa17.3■□□□□ 0.36
CPSF4-201ENST00000292476 WDR4P57081 412 aaKnown RBP17.3■□□□□ 0.36
CPSF4-201ENST00000292476 ELF3P78545 371 aaPredicted RBP17.3■□□□□ 0.36
CPSF4-201ENST00000292476 GRIN2CQ14957 1233 aa17.3■□□□□ 0.36
CPSF4-201ENST00000292476 PDK4Q16654 411 aa17.3■□□□□ 0.36
CPSF4-201ENST00000292476 SYPL2Q5VXT5 272 aa17.3■□□□□ 0.36
CPSF4-201ENST00000292476 TPGS2Q68CL5 300 aa17.3■□□□□ 0.36
CPSF4-201ENST00000292476 DENND5BQ6ZUT9 1274 aa17.3■□□□□ 0.36
CPSF4-201ENST00000292476 HFE2Q6ZVN8 426 aa17.3■□□□□ 0.36
CPSF4-201ENST00000292476 BZW1Q7L1Q6 419 aaKnown RBP17.3■□□□□ 0.36
CPSF4-201ENST00000292476 BHLHA9Q7RTU4 235 aa17.3■□□□□ 0.36
CPSF4-201ENST00000292476 SPRED2Q7Z698 418 aa17.3■□□□□ 0.36
CPSF4-201ENST00000292476 DDX53Q86TM3 631 aaKnown RBP17.3■□□□□ 0.36
CPSF4-201ENST00000292476 TMEM173Q86WV6 379 aaPredicted RBP17.3■□□□□ 0.36
CPSF4-201ENST00000292476 COLGALT1Q8NBJ5 622 aa17.3■□□□□ 0.36
CPSF4-201ENST00000292476 RNF139Q8WU17 664 aa17.3■□□□□ 0.36
CPSF4-201ENST00000292476 CPT1BQ92523 772 aa17.3■□□□□ 0.36
CPSF4-201ENST00000292476 ALKBH8Q96BT7 664 aaKnown RBP17.3■□□□□ 0.36
CPSF4-201ENST00000292476 HAUS1Q96CS2 278 aa17.3■□□□□ 0.36
CPSF4-201ENST00000292476 FAF2Q96CS3 445 aa17.3■□□□□ 0.36
CPSF4-201ENST00000292476 GUCD1Q96NT3 240 aa17.3■□□□□ 0.36
CPSF4-201ENST00000292476 RAD9AQ99638 391 aa17.3■□□□□ 0.36
CPSF4-201ENST00000292476 FRMD8Q9BZ67 464 aaPredicted RBP17.3■□□□□ 0.36
CPSF4-201ENST00000292476 DHX35Q9H5Z1 703 aaKnown RBP17.3■□□□□ 0.36
CPSF4-201ENST00000292476 ACSS3Q9H6R3 686 aa17.3■□□□□ 0.36
CPSF4-201ENST00000292476 CERS4Q9HA82 394 aa17.3■□□□□ 0.36
CPSF4-201ENST00000292476 MAFFQ9ULX9 164 aa17.3■□□□□ 0.36
CPSF4-201ENST00000292476 CDY1Q9Y6F8 540 aa17.3■□□□□ 0.36
CPSF4-201ENST00000292476 NLRC5Q86WI3 1866 aa17.3■□□□□ 0.36
CPSF4-201ENST00000292476 CHD9Q3L8U1 2897 aa17.3■□□□□ 0.36
CPSF4-201ENST00000292476 APOL1O14791 398 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 SPAG6O75602 509 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 UBOX5O94941 541 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 HAPLN1P10915 354 aaPredicted RBP17.29■□□□□ 0.36
CPSF4-201ENST00000292476 TFE3P19532 575 aaPredicted RBP17.29■□□□□ 0.36
CPSF4-201ENST00000292476 L1CAMP32004 1257 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 RPL22P35268 128 aaKnown RBP17.29■□□□□ 0.36
CPSF4-201ENST00000292476 DSG1Q02413 1049 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 SCAPQ12770 1279 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 NME3Q13232 169 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 FASTKD3Q14CZ7 662 aaKnown RBP17.29■□□□□ 0.36
CPSF4-201ENST00000292476 MGAT5BQ3V5L5 792 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 TAS1R1Q7RTX1 841 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 PYROXD1Q8WU10 500 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 BCL7CQ8WUZ0 217 aaPredicted RBP17.29■□□□□ 0.36
CPSF4-201ENST00000292476 B3GALT6Q96L58 329 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 PGLYRP2Q96PD5 576 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 DDIT4Q9NX09 232 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 IL37Q9NZH6 218 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 RABGEF1Q9UJ41 708 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 INSL6Q9Y581 213 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 POC1B-GALNT4F8VUJ3 575 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 H3BRJ5 948 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 TYROBPO43914 113 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 ZNF189O75820 626 aaPredicted RBP17.29■□□□□ 0.36
CPSF4-201ENST00000292476 URODP06132 367 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 CD48P09326 243 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 KRT15P19012 456 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 YWHAQP27348 245 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 FOXN2P32314 431 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 NR2C2P49116 596 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 EIF3EP60228 445 aaKnown RBP17.29■□□□□ 0.36
CPSF4-201ENST00000292476 NCALDP61601 193 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 DDR2Q16832 855 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 PPP6R3Q5H9R7 873 aaPredicted RBP17.29■□□□□ 0.36
CPSF4-201ENST00000292476 SPDYAQ5MJ70 313 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 ADGRD1Q6QNK2 874 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 FAM131BQ86XD5 332 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 PDIK1LQ8N165 341 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 ATAD1Q8NBU5 361 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 SCAMP5Q8TAC9 235 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 PITPNM3Q9BZ71 974 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 WDCPQ9H6R7 721 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.29■□□□□ 0.36
CPSF4-201ENST00000292476 AFF4Q9UHB7 1163 aaKnown RBP17.29■□□□□ 0.36
CPSF4-201ENST00000292476 FBXW11Q9UKB1 542 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 MRPL42Q9Y6G3 142 aaKnown RBP17.29■□□□□ 0.36
CPSF4-201ENST00000292476 CLUHO75153 1309 aa17.29■□□□□ 0.36
CPSF4-201ENST00000292476 VWA8A3KMH1 1905 aa17.28■□□□□ 0.36
CPSF4-201ENST00000292476 FAM92AA1XBS5 289 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms