RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 SNTA1Q13424 505 aa9.44□□□□□ -0.9
PDGFC-201ENST00000274071 DRAP1Q14919 205 aaPredicted RBP9.44□□□□□ -0.9
PDGFC-201ENST00000274071 CDK10Q15131 360 aa9.44□□□□□ -0.9
PDGFC-201ENST00000274071 DLG2Q15700 870 aa9.44□□□□□ -0.9
PDGFC-201ENST00000274071 IGSF11Q5DX21 431 aa9.44□□□□□ -0.9
PDGFC-201ENST00000274071 CDHR3Q6ZTQ4 885 aa9.44□□□□□ -0.9
PDGFC-201ENST00000274071 SH2D5Q6ZV89 423 aa9.44□□□□□ -0.9
PDGFC-201ENST00000274071 KCNK18Q7Z418 384 aa9.44□□□□□ -0.9
PDGFC-201ENST00000274071 SLC4A11Q8NBS3 891 aa9.44□□□□□ -0.9
PDGFC-201ENST00000274071 APPL2Q8NEU8 664 aa9.44□□□□□ -0.9
PDGFC-201ENST00000274071 TTC9Q92623 222 aa9.44□□□□□ -0.9
PDGFC-201ENST00000274071 E2F7Q96AV8 911 aa9.44□□□□□ -0.9
PDGFC-201ENST00000274071 DNAJC19Q96DA6 116 aa9.44□□□□□ -0.9
PDGFC-201ENST00000274071 CMTM5Q96DZ9 223 aa9.44□□□□□ -0.9
PDGFC-201ENST00000274071 GJD4Q96KN9 370 aaPredicted RBP9.44□□□□□ -0.9
PDGFC-201ENST00000274071 SNX18Q96RF0 628 aa9.44□□□□□ -0.9
PDGFC-201ENST00000274071 MTG1Q9BT17 334 aaPredicted RBP9.44□□□□□ -0.9
PDGFC-201ENST00000274071 AKIP1Q9NQ31 210 aa9.44□□□□□ -0.9
PDGFC-201ENST00000274071 ZNF229Q9UJW7 825 aa9.44□□□□□ -0.9
PDGFC-201ENST00000274071 PSME2Q9UL46 239 aa9.44□□□□□ -0.9
PDGFC-201ENST00000274071 BOLA1Q9Y3E2 137 aa9.44□□□□□ -0.9
PDGFC-201ENST00000274071 C10orf71Q711Q0 1435 aa9.44□□□□□ -0.9
PDGFC-201ENST00000274071 ARAP2Q8WZ64 1704 aa9.44□□□□□ -0.9
PDGFC-201ENST00000274071 TAF1P21675 1872 aa9.44□□□□□ -0.9
PDGFC-201ENST00000274071 LAMB2P55268 1798 aa9.44□□□□□ -0.9
PDGFC-201ENST00000274071 BTAF1O14981 1849 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 DENND3A2RUS2 1198 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 WTIPA6NIX2 430 aaPredicted RBP9.43□□□□□ -0.9
PDGFC-201ENST00000274071 OR5K4A6NMS3 321 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 FAM155AB1AL88 458 aaPredicted RBP9.43□□□□□ -0.9
PDGFC-201ENST00000274071 F5H6K3 240 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 NOL3O60936 208 aaKnown RBP9.43□□□□□ -0.9
PDGFC-201ENST00000274071 BANF1O75531 89 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 PRLP01236 227 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 GNAO1P09471 354 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 XRCC1P18887 633 aaPredicted RBP9.43□□□□□ -0.9
PDGFC-201ENST00000274071 GARTP22102 1010 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 KLRC2P26717 231 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 ARNTP27540 789 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 SLC26A3P40879 764 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 ATXN3P54252 364 aaPredicted RBP9.43□□□□□ -0.9
PDGFC-201ENST00000274071 GJA9P57773 515 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 FCHO2Q0JRZ9 810 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 TCEAL1Q15170 157 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 DUSP7Q16829 419 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 NHSL2Q5HYW2 709 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 RSBN1Q5VWQ0 802 aaPredicted RBP9.43□□□□□ -0.9
PDGFC-201ENST00000274071 BNC2Q6ZN30 1099 aaPredicted RBP9.43□□□□□ -0.9
PDGFC-201ENST00000274071 FRMD5Q7Z6J6 570 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 CATSPER3Q86XQ3 398 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 ARMC8Q8IUR7 673 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 BHLHE22Q8NFJ8 381 aaPredicted RBP9.43□□□□□ -0.9
PDGFC-201ENST00000274071 OR5H6Q8NGV6 325 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 DCAKDQ8WVC6 231 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 APOPT1Q96IL0 206 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 ZNF560Q96MR9 790 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 CSF3RQ99062 836 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 TMEM246Q9BRR3 403 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 WDR12Q9GZL7 423 aaKnown RBP9.43□□□□□ -0.9
PDGFC-201ENST00000274071 EHMT1Q9H9B1 1298 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 WASH6PQ9NQA3 447 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 SERPINB13Q9UIV8 391 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 ENPP5Q9UJA9 477 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 NOSIPQ9Y314 301 aaKnown RBP9.43□□□□□ -0.9
PDGFC-201ENST00000274071 ATP6V1G2-DDX39BF2Z307 99 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 SHOXO15266 292 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 HTRA2O43464 458 aaPredicted RBP9.43□□□□□ -0.9
PDGFC-201ENST00000274071 NDUFS2O75306 463 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 ASNSP08243 561 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 CASP3P42574 277 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 PTPN9P43378 593 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 TMBIM6P55061 237 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 MAP3K7CLP57077 242 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 SMARCB1Q12824 385 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 CDC20Q12834 499 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 SNX17Q15036 470 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 CHI3L2Q15782 390 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 TEX44Q53QW1 395 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 KIAA0408Q6ZU52 694 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 KCTD8Q6ZWB6 473 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 PIWIL3Q7Z3Z3 882 aaKnown RBP9.43□□□□□ -0.9
PDGFC-201ENST00000274071 GLIS1Q8NBF1 620 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 LEMD2Q8NC56 503 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 RAD54LQ92698 747 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 HTRA1Q92743 480 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 TRIM63Q969Q1 353 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 KLHL32Q96NJ5 620 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 MTMR12Q9C0I1 747 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 GPR88Q9GZN0 384 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 CPNE5Q9HCH3 593 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 DUS2Q9NX74 493 aaKnown RBP9.43□□□□□ -0.9
PDGFC-201ENST00000274071 PCDHAC2Q9Y5I4 1007 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 COL4A1P02462 1669 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 GAKO14976 1311 aa9.43□□□□□ -0.9
PDGFC-201ENST00000274071 CCDC195A0A1B0GUA6 201 aa9.42□□□□□ -0.9
PDGFC-201ENST00000274071 SMCO2A6NFE2 343 aa9.42□□□□□ -0.9
PDGFC-201ENST00000274071 AREL1O15033 823 aa9.42□□□□□ -0.9
PDGFC-201ENST00000274071 KRT8P05787 483 aa9.42□□□□□ -0.9
PDGFC-201ENST00000274071 UGT2B4P06133 528 aa9.42□□□□□ -0.9
PDGFC-201ENST00000274071 CALM1P0DP23 149 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms