RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 CRTAC1Q9NQ79 661 aa17.07■□□□□ 0.32
VPS54-201ENST00000272322 CNTN3Q9P232 1028 aa17.07■□□□□ 0.32
VPS54-201ENST00000272322 FZD10Q9ULW2 581 aa17.07■□□□□ 0.32
VPS54-201ENST00000272322 E9PBE3 544 aa17.07■□□□□ 0.32
VPS54-201ENST00000272322 PTGESO14684 152 aa17.07■□□□□ 0.32
VPS54-201ENST00000272322 KLHL41O60662 606 aa17.07■□□□□ 0.32
VPS54-201ENST00000272322 STK10O94804 968 aaKnown RBP17.07■□□□□ 0.32
VPS54-201ENST00000272322 ITGA2BP08514 1039 aa17.07■□□□□ 0.32
VPS54-201ENST00000272322 WASHC5Q12768 1159 aa17.07■□□□□ 0.32
VPS54-201ENST00000272322 EFHC1Q5JVL4 640 aa17.07■□□□□ 0.32
VPS54-201ENST00000272322 ATG16L1Q676U5 607 aa17.07■□□□□ 0.32
VPS54-201ENST00000272322 ARHGAP36Q6ZRI8 547 aa17.07■□□□□ 0.32
VPS54-201ENST00000272322 ZNF354CQ86Y25 554 aa17.07■□□□□ 0.32
VPS54-201ENST00000272322 SCAMP5Q8TAC9 235 aa17.07■□□□□ 0.32
VPS54-201ENST00000272322 CDKL2Q92772 493 aa17.07■□□□□ 0.32
VPS54-201ENST00000272322 ATP2A3Q93084 1043 aa17.07■□□□□ 0.32
VPS54-201ENST00000272322 QKIQ96PU8 341 aaKnown RBP eCLIP17.07■□□□□ 0.326e-11■■■■□ 26.7
VPS54-201ENST00000272322 TSPYL2Q9H2G4 693 aaPredicted RBP17.07■□□□□ 0.32
VPS54-201ENST00000272322 PPCSQ9HAB8 311 aa17.07■□□□□ 0.32
VPS54-201ENST00000272322 ANK1P16157 1881 aa17.07■□□□□ 0.32
VPS54-201ENST00000272322 GCATO75600 419 aa17.06■□□□□ 0.32
VPS54-201ENST00000272322 MT-CYBP00156 380 aaPredicted RBP17.06■□□□□ 0.32
VPS54-201ENST00000272322 SLC18A1P54219 525 aa17.06■□□□□ 0.32
VPS54-201ENST00000272322 SNX16P57768 344 aa17.06■□□□□ 0.32
VPS54-201ENST00000272322 POU5F1BQ06416 359 aa17.06■□□□□ 0.32
VPS54-201ENST00000272322 RALGPS1Q5JS13 557 aa17.06■□□□□ 0.32
VPS54-201ENST00000272322 GNASQ5JWF2 1037 aa17.06■□□□□ 0.32
VPS54-201ENST00000272322 LRRC52Q8N7C0 313 aa17.06■□□□□ 0.32
VPS54-201ENST00000272322 NAF1Q96HR8 494 aaKnown RBP17.06■□□□□ 0.32
VPS54-201ENST00000272322 MSI1O43347 362 aaKnown RBP17.06■□□□□ 0.32
VPS54-201ENST00000272322 BPGMP07738 259 aa17.06■□□□□ 0.32
VPS54-201ENST00000272322 FAM200BP0CF97 657 aa17.06■□□□□ 0.32
VPS54-201ENST00000272322 PRKCHP24723 683 aa17.06■□□□□ 0.32
VPS54-201ENST00000272322 LDLRAD1Q5T700 205 aa17.06■□□□□ 0.32
VPS54-201ENST00000272322 TLDC1Q6P9B6 456 aa17.06■□□□□ 0.32
VPS54-201ENST00000272322 IFNLR1Q8IU57 520 aaPredicted RBP17.06■□□□□ 0.32
VPS54-201ENST00000272322 ARNTL2Q8WYA1 636 aa17.06■□□□□ 0.32
VPS54-201ENST00000272322 OSBPL1AQ9BXW6 950 aa17.06■□□□□ 0.32
VPS54-201ENST00000272322 DUSP16Q9BY84 665 aa17.06■□□□□ 0.32
VPS54-201ENST00000272322 TKTL2Q9H0I9 626 aa17.06■□□□□ 0.32
VPS54-201ENST00000272322 SLC39A10Q9ULF5 831 aa17.06■□□□□ 0.32
VPS54-201ENST00000272322 NRCAMQ92823 1304 aa17.06■□□□□ 0.32
VPS54-201ENST00000272322 EME2A4GXA9 379 aaPredicted RBP17.06■□□□□ 0.32
VPS54-201ENST00000272322 DGKIO75912 1065 aa17.06■□□□□ 0.32
VPS54-201ENST00000272322 CD4P01730 458 aa17.06■□□□□ 0.32
VPS54-201ENST00000272322 OR4Q2P0C623 313 aa17.06■□□□□ 0.32
VPS54-201ENST00000272322 SKIV2L2P42285 1042 aaKnown RBP17.06■□□□□ 0.32
VPS54-201ENST00000272322 PSEN2P49810 448 aa17.06■□□□□ 0.32
VPS54-201ENST00000272322 POU6F1Q14863 301 aa17.06■□□□□ 0.32
VPS54-201ENST00000272322 UBXN11Q5T124 520 aa17.06■□□□□ 0.32
VPS54-201ENST00000272322 SKA1Q96BD8 255 aa17.06■□□□□ 0.32
VPS54-201ENST00000272322 ZNF560Q96MR9 790 aa17.06■□□□□ 0.32
VPS54-201ENST00000272322 TMEM209Q96SK2 561 aa17.06■□□□□ 0.32
VPS54-201ENST00000272322 IARS2Q9NSE4 1012 aaKnown RBP17.06■□□□□ 0.32
VPS54-201ENST00000272322 DPYSL4O14531 572 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 STRNO43815 780 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 TBX10O75333 385 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 SPAG6O75602 509 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 ARRB2P32121 409 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 PTPN9P43378 593 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 OTUD1Q5VV17 481 aaPredicted RBP17.05■□□□□ 0.32
VPS54-201ENST00000272322 UNC93AQ86WB7 457 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 RNF135Q8IUD6 432 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 FAM136AQ96C01 138 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 SPDL1Q96EA4 605 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 PLEKHA5Q9HAU0 1116 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 C20orf96Q9NUD7 363 aaPredicted RBP17.05■□□□□ 0.32
VPS54-201ENST00000272322 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP17.05■□□□□ 0.32
VPS54-201ENST00000272322 TTC24A2A3L6 582 aaPredicted RBP17.05■□□□□ 0.32
VPS54-201ENST00000272322 FAM159BA6NKW6 160 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 NEBLO76041 1014 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 NFKB1P19838 968 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 SLC1A6P48664 564 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 DCLK2Q8N568 766 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 GPR152Q8TDT2 470 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 INPP5DQ92835 1189 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 MARK4Q96L34 752 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 DDX50Q9BQ39 737 aaKnown RBP17.05■□□□□ 0.32
VPS54-201ENST00000272322 SFMBT1Q9UHJ3 866 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 STAP1Q9ULZ2 295 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 RRN3P2A6NIE6 340 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 ZBTB17Q13105 803 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 PCSK7Q16549 785 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 KYAT1Q16773 422 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 SNX30Q5VWJ9 437 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 USP50Q70EL3 339 aaPredicted RBP17.05■□□□□ 0.32
VPS54-201ENST00000272322 CRYBG2Q8N1P7 616 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 RNF148Q8N7C7 305 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 SHCBP1Q8NEM2 672 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 PPP4R1Q8TF05 950 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 WNT8BQ93098 351 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 APBA2Q99767 749 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 SYT15Q9BQS2 421 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 PHACTR1Q9C0D0 580 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 AP5M1Q9H0R1 490 aa17.05■□□□□ 0.32
VPS54-201ENST00000272322 HBS1LQ9Y450 684 aaKnown RBP17.05■□□□□ 0.32
VPS54-201ENST00000272322 FYNP06241 537 aa17.04■□□□□ 0.32
VPS54-201ENST00000272322 ADRA1BP35368 520 aa17.04■□□□□ 0.32
VPS54-201ENST00000272322 ABL2P42684 1182 aa17.04■□□□□ 0.32
VPS54-201ENST00000272322 SV2CQ496J9 727 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms