RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 GPX6P59796 221 aa16.96■□□□□ 0.31
USP4-201ENST00000265560 GUCY1A3Q02108 690 aa16.96■□□□□ 0.31
USP4-201ENST00000265560 TWF1Q12792 350 aa16.96■□□□□ 0.31
USP4-201ENST00000265560 PDK1Q15118 436 aa16.96■□□□□ 0.31
USP4-201ENST00000265560 ALFQ53S48 1182 aa16.96■□□□□ 0.31
USP4-201ENST00000265560 IL37Q9NZH6 218 aa16.96■□□□□ 0.31
USP4-201ENST00000265560 C2orf78A6NCI8 922 aa16.96■□□□□ 0.31
USP4-201ENST00000265560 ZNF487B1APH4 448 aa16.96■□□□□ 0.31
USP4-201ENST00000265560 ARL4CP56559 192 aa16.96■□□□□ 0.31
USP4-201ENST00000265560 ZBTB17Q13105 803 aa16.96■□□□□ 0.31
USP4-201ENST00000265560 PDIK1LQ8N165 341 aa16.96■□□□□ 0.31
USP4-201ENST00000265560 MPP5Q8N3R9 675 aa16.96■□□□□ 0.31
USP4-201ENST00000265560 CFAP36Q96G28 342 aa16.96■□□□□ 0.31
USP4-201ENST00000265560 SERPINB12Q96P63 405 aa16.96■□□□□ 0.31
USP4-201ENST00000265560 APOL2Q9BQE5 337 aa16.96■□□□□ 0.31
USP4-201ENST00000265560 KLC2Q9H0B6 622 aa16.96■□□□□ 0.31
USP4-201ENST00000265560 KLHL8Q9P2G9 620 aaPredicted RBP16.96■□□□□ 0.31
USP4-201ENST00000265560 LTBP2Q14767 1821 aa16.95■□□□□ 0.3
USP4-201ENST00000265560 CLUHO75153 1309 aa16.95■□□□□ 0.3
USP4-201ENST00000265560 RGS16O15492 202 aaPredicted RBP16.95■□□□□ 0.3
USP4-201ENST00000265560 JCHAINP01591 159 aa16.95■□□□□ 0.3
USP4-201ENST00000265560 NR1D1P20393 614 aa16.95■□□□□ 0.3
USP4-201ENST00000265560 XRCC4Q13426 336 aa16.95■□□□□ 0.3
USP4-201ENST00000265560 AUHQ13825 339 aaKnown RBP16.95■□□□□ 0.3
USP4-201ENST00000265560 C3orf62Q6ZUJ4 267 aa16.95■□□□□ 0.3
USP4-201ENST00000265560 PCGF5Q86SE9 256 aa16.95■□□□□ 0.3
USP4-201ENST00000265560 RNF38Q9H0F5 515 aa16.95■□□□□ 0.3
USP4-201ENST00000265560 MRPL17Q9NRX2 175 aaKnown RBP16.95■□□□□ 0.3
USP4-201ENST00000265560 AFF4Q9UHB7 1163 aaKnown RBP16.95■□□□□ 0.3
USP4-201ENST00000265560 TLR6Q9Y2C9 796 aa16.95■□□□□ 0.3
USP4-201ENST00000265560 YIPF1Q9Y548 306 aa16.95■□□□□ 0.3
USP4-201ENST00000265560 CAPN15O75808 1086 aa16.95■□□□□ 0.3
USP4-201ENST00000265560 CNPP09543 421 aaKnown RBP16.95■□□□□ 0.3
USP4-201ENST00000265560 HMGA1P17096 107 aaKnown RBP16.95■□□□□ 0.3
USP4-201ENST00000265560 LAG3P18627 525 aa16.95■□□□□ 0.3
USP4-201ENST00000265560 AIF1P55008 147 aa16.95■□□□□ 0.3
USP4-201ENST00000265560 PRKD1Q15139 912 aaPredicted RBP16.95■□□□□ 0.3
USP4-201ENST00000265560 MS4A13Q5J8X5 152 aa16.95■□□□□ 0.3
USP4-201ENST00000265560 TMC7Q7Z402 723 aa16.95■□□□□ 0.3
USP4-201ENST00000265560 CAND1Q86VP6 1230 aaKnown RBP16.95■□□□□ 0.3
USP4-201ENST00000265560 ZNF354CQ86Y25 554 aa16.95■□□□□ 0.3
USP4-201ENST00000265560 IGSF8Q969P0 613 aa16.95■□□□□ 0.3
USP4-201ENST00000265560 SLC39A13Q96H72 371 aa16.95■□□□□ 0.3
USP4-201ENST00000265560 TRIM62Q9BVG3 475 aa16.95■□□□□ 0.3
USP4-201ENST00000265560 SLC39A8Q9C0K1 460 aa16.95■□□□□ 0.3
USP4-201ENST00000265560 BACE2Q9Y5Z0 518 aa16.95■□□□□ 0.3
USP4-201ENST00000265560 FAM92AA1XBS5 289 aa16.94■□□□□ 0.3
USP4-201ENST00000265560 GRXCR1A8MXD5 290 aa16.94■□□□□ 0.3
USP4-201ENST00000265560 GCATO75600 419 aa16.94■□□□□ 0.3
USP4-201ENST00000265560 ABLIM3O94929 683 aa16.94■□□□□ 0.3
USP4-201ENST00000265560 ALDH1A3P47895 512 aa16.94■□□□□ 0.3
USP4-201ENST00000265560 MLLT6P55198 1093 aaPredicted RBP16.94■□□□□ 0.3
USP4-201ENST00000265560 FPGSQ05932 587 aa16.94■□□□□ 0.3
USP4-201ENST00000265560 ARTNQ5T4W7 220 aa16.94■□□□□ 0.3
USP4-201ENST00000265560 KDELC2Q7Z4H8 507 aa16.94■□□□□ 0.3
USP4-201ENST00000265560 PALM2Q8IXS6 379 aa16.94■□□□□ 0.3
USP4-201ENST00000265560 FIBCD1Q8N539 461 aa16.94■□□□□ 0.3
USP4-201ENST00000265560 BHMTQ93088 406 aa16.94■□□□□ 0.3
USP4-201ENST00000265560 WBP2Q969T9 261 aa16.94■□□□□ 0.3
USP4-201ENST00000265560 RTP4Q96DX8 246 aa16.94■□□□□ 0.3
USP4-201ENST00000265560 ZNF419Q96HQ0 510 aaPredicted RBP16.94■□□□□ 0.3
USP4-201ENST00000265560 SPATA17Q96L03 361 aa16.94■□□□□ 0.3
USP4-201ENST00000265560 MAD1L1Q9Y6D9 718 aa16.94■□□□□ 0.3
USP4-201ENST00000265560 SPTBN5Q9NRC6 3674 aaKnown RBP16.94■□□□□ 0.3
USP4-201ENST00000265560 A0A0A0MRY4 1105 aa16.94■□□□□ 0.3
USP4-201ENST00000265560 CFAP69A5D8W1 941 aa16.94■□□□□ 0.3
USP4-201ENST00000265560 PPP1R12AO14974 1030 aaPredicted RBP16.94■□□□□ 0.3
USP4-201ENST00000265560 ALOX15BO15296 676 aa16.94■□□□□ 0.3
USP4-201ENST00000265560 ZBTB24O43167 697 aaPredicted RBP16.94■□□□□ 0.3
USP4-201ENST00000265560 ELF1P32519 619 aa16.94■□□□□ 0.3
USP4-201ENST00000265560 TUFMP49411 452 aaKnown RBP16.94■□□□□ 0.3
USP4-201ENST00000265560 PPP2R5DQ14738 602 aa16.94■□□□□ 0.3
USP4-201ENST00000265560 BRMS1LQ5PSV4 323 aa16.94■□□□□ 0.3
USP4-201ENST00000265560 CMTR2Q8IYT2 770 aaKnown RBP16.94■□□□□ 0.3
USP4-201ENST00000265560 SPATA13Q96N96 652 aa16.94■□□□□ 0.3
USP4-201ENST00000265560 SLC22A12Q96S37 553 aa16.94■□□□□ 0.3
USP4-201ENST00000265560 FAM129AQ9BZQ8 928 aa16.94■□□□□ 0.3
USP4-201ENST00000265560 OSBPL2Q9H1P3 480 aa16.94■□□□□ 0.3
USP4-201ENST00000265560 TRPC7Q9HCX4 862 aa16.94■□□□□ 0.3
USP4-201ENST00000265560 PCDHB12Q9Y5F1 795 aa16.94■□□□□ 0.3
USP4-201ENST00000265560 ERICH4A6NGS2 130 aa16.94■□□□□ 0.3
USP4-201ENST00000265560 GJA1P17302 382 aa16.94■□□□□ 0.3
USP4-201ENST00000265560 PTPN3P26045 913 aa16.94■□□□□ 0.3
USP4-201ENST00000265560 GARSP41250 739 aaKnown RBP16.94■□□□□ 0.3
USP4-201ENST00000265560 EIF3BP55884 814 aaKnown RBP16.94■□□□□ 0.3
USP4-201ENST00000265560 SESN2P58004 480 aaPredicted RBP16.94■□□□□ 0.3
USP4-201ENST00000265560 TMEM240Q5SV17 173 aa16.94■□□□□ 0.3
USP4-201ENST00000265560 OTOP3Q7RTS5 596 aa16.94■□□□□ 0.3
USP4-201ENST00000265560 HAPLN3Q96S86 360 aa16.94■□□□□ 0.3
USP4-201ENST00000265560 ALPK3Q96L96 1907 aa16.94■□□□□ 0.3
USP4-201ENST00000265560 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.93■□□□□ 0.3
USP4-201ENST00000265560 EXOC1LA0A1B0GW35 172 aa16.93■□□□□ 0.3
USP4-201ENST00000265560 C5orf60A6NFR6 353 aa16.93■□□□□ 0.3
USP4-201ENST00000265560 APOEP02649 317 aa16.93■□□□□ 0.3
USP4-201ENST00000265560 ERVFC1P60507 584 aa16.93■□□□□ 0.3
USP4-201ENST00000265560 FBXL22Q6P050 247 aa16.93■□□□□ 0.3
USP4-201ENST00000265560 DNAJB7Q7Z6W7 309 aaPredicted RBP16.93■□□□□ 0.3
USP4-201ENST00000265560 DDX53Q86TM3 631 aaKnown RBP16.93■□□□□ 0.3
USP4-201ENST00000265560 TBC1D31Q96DN5 1066 aa16.93■□□□□ 0.3
USP4-201ENST00000265560 TSPYL1Q9H0U9 437 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms