RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 PNPLA8Q9NP80 782 aa9.37□□□□□ -0.91
MSH4-201ENST00000263187 KLHL8Q9P2G9 620 aaPredicted RBP9.37□□□□□ -0.91
MSH4-201ENST00000263187 RBPJLQ9UBG7 517 aa9.37□□□□□ -0.91
MSH4-201ENST00000263187 INPP5FQ9Y2H2 1132 aa9.37□□□□□ -0.91
MSH4-201ENST00000263187 TIMM13Q9Y5L4 95 aaPredicted RBP9.37□□□□□ -0.91
MSH4-201ENST00000263187 CITO14578 2027 aa9.37□□□□□ -0.91
MSH4-201ENST00000263187 KLF11O14901 512 aa9.37□□□□□ -0.91
MSH4-201ENST00000263187 SPTLC1O15269 473 aa9.37□□□□□ -0.91
MSH4-201ENST00000263187 ZBTB14O43829 449 aa9.37□□□□□ -0.91
MSH4-201ENST00000263187 DDNO94850 711 aaPredicted RBP9.37□□□□□ -0.91
MSH4-201ENST00000263187 PGM3O95394 542 aa9.37□□□□□ -0.91
MSH4-201ENST00000263187 RAG1P15918 1043 aa9.37□□□□□ -0.91
MSH4-201ENST00000263187 RPS12P25398 132 aaKnown RBP9.37□□□□□ -0.91
MSH4-201ENST00000263187 EPHA3P29320 983 aa9.37□□□□□ -0.91
MSH4-201ENST00000263187 RAP1GDS1P52306 607 aa9.37□□□□□ -0.91
MSH4-201ENST00000263187 SARNPP82979 210 aaKnown RBP9.37□□□□□ -0.91
MSH4-201ENST00000263187 ZNF460Q14592 562 aa9.37□□□□□ -0.91
MSH4-201ENST00000263187 ACAP1Q15027 740 aa9.37□□□□□ -0.91
MSH4-201ENST00000263187 HFE2Q6ZVN8 426 aa9.37□□□□□ -0.91
MSH4-201ENST00000263187 PLPPR4Q7Z2D5 763 aa9.37□□□□□ -0.91
MSH4-201ENST00000263187 NET1Q7Z628 596 aaPredicted RBP9.37□□□□□ -0.91
MSH4-201ENST00000263187 PTAR1Q7Z6K3 402 aaPredicted RBP9.37□□□□□ -0.91
MSH4-201ENST00000263187 MYLK4Q86YV6 388 aaPredicted RBP9.37□□□□□ -0.91
MSH4-201ENST00000263187 APOBEC3FQ8IUX4 373 aaKnown RBP9.37□□□□□ -0.91
MSH4-201ENST00000263187 DCLK2Q8N568 766 aa9.37□□□□□ -0.91
MSH4-201ENST00000263187 FAM156AQ8NDB6 213 aa9.37□□□□□ -0.91
MSH4-201ENST00000263187 ATP2A3Q93084 1043 aa9.37□□□□□ -0.91
MSH4-201ENST00000263187 OR52B2Q96RD2 323 aa9.37□□□□□ -0.91
MSH4-201ENST00000263187 SORT1Q99523 831 aa9.37□□□□□ -0.91
MSH4-201ENST00000263187 TRIM4Q9C037 500 aa9.37□□□□□ -0.91
MSH4-201ENST00000263187 RNF39Q9H2S5 420 aa9.37□□□□□ -0.91
MSH4-201ENST00000263187 COG4Q9H9E3 785 aa9.37□□□□□ -0.91
MSH4-201ENST00000263187 CYP3A43Q9HB55 503 aa9.37□□□□□ -0.91
MSH4-201ENST00000263187 ZNF180Q9UJW8 692 aa9.37□□□□□ -0.91
MSH4-201ENST00000263187 PCDHGB4Q9UN71 923 aa9.37□□□□□ -0.91
MSH4-201ENST00000263187 PCDHGB5Q9Y5G0 923 aa9.37□□□□□ -0.91
MSH4-201ENST00000263187 MAGEA13PA6NCF6 341 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 STX16-NPEPL1H3BU86 382 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 M0QYT0 321 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 PHGDHO43175 533 aaKnown RBP9.36□□□□□ -0.91
MSH4-201ENST00000263187 MAGEC1O60732 1142 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 CNMDO75829 334 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 MCF2P10911 925 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 IFRD2Q12894 506 aaPredicted RBP9.36□□□□□ -0.91
MSH4-201ENST00000263187 TUBB3Q13509 450 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 TRMT5Q32P41 509 aaKnown RBP9.36□□□□□ -0.91
MSH4-201ENST00000263187 CATSPER4Q7RTX7 472 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 ZNF567Q8N184 647 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 GDPD5Q8WTR4 605 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 ARNTL2Q8WYA1 636 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 CDKL2Q92772 493 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 GATA6Q92908 595 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 CELF6Q96J87 481 aaKnown RBP9.36□□□□□ -0.91
MSH4-201ENST00000263187 ZNF670Q9BS34 389 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 SNX15Q9NRS6 342 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 MOCS1Q9NZB8 636 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 PPME1Q9Y570 386 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 POLR2AP24928 1970 aaKnown RBP9.36□□□□□ -0.91
MSH4-201ENST00000263187 GCATO75600 419 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 OR6B1O95007 311 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 CPA3P15088 417 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 TSHRP16473 764 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 DESP17661 470 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 TKTP29401 623 aaKnown RBP9.36□□□□□ -0.91
MSH4-201ENST00000263187 GNL1P36915 607 aaPredicted RBP9.36□□□□□ -0.91
MSH4-201ENST00000263187 CCNFP41002 786 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 TBL3Q12788 808 aaKnown RBP9.36□□□□□ -0.91
MSH4-201ENST00000263187 CCNIQ14094 377 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 TTLL4Q14679 1199 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 DNAL1Q4LDG9 190 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 MMADHCQ9H3L0 296 aaPredicted RBP9.36□□□□□ -0.91
MSH4-201ENST00000263187 ASB7Q9H672 318 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 S100A14Q9HCY8 104 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 CHRAC1Q9NRG0 131 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 SLC39A10Q9ULF5 831 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 NUP205Q92621 2012 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 LCTP09848 1927 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 A0A0A0MRY4 1105 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 CAPN8A6NHC0 703 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 PRKCGP05129 697 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 MPSTP25325 297 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 ATICP31939 592 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 NUDT2P50583 147 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 TNFAIP2Q03169 654 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 INCA1Q0VD86 236 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 WASHC5Q12768 1159 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 ARMCX2Q7L311 632 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 TMEM110Q86TL2 294 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 LENG1Q96BZ8 264 aaPredicted RBP9.36□□□□□ -0.91
MSH4-201ENST00000263187 SPATA13Q96N96 652 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 QKIQ96PU8 341 aaKnown RBP eCLIP9.36□□□□□ -0.91
MSH4-201ENST00000263187 OMDQ99983 421 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 SLC4A5Q9BY07 1137 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 NUF2Q9BZD4 464 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 COPG2Q9UBF2 871 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 CDH22Q9UJ99 828 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 ITGA11Q9UKX5 1188 aa9.36□□□□□ -0.91
MSH4-201ENST00000263187 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.35□□□□□ -0.91
MSH4-201ENST00000263187 TK2O00142 265 aa9.35□□□□□ -0.91
MSH4-201ENST00000263187 MT-CO1P00395 513 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms