RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 H7C0S8 307 aa19.54■□□□□ 0.72
UPF1-201ENST00000262803 ERBB2P04626 1255 aa19.54■□□□□ 0.72
UPF1-201ENST00000262803 RPS7P62081 194 aaKnown RBP19.54■□□□□ 0.72
UPF1-201ENST00000262803 PGS1Q32NB8 556 aa19.54■□□□□ 0.72
UPF1-201ENST00000262803 ATXN2LQ8WWM7 1075 aaKnown RBP19.54■□□□□ 0.72
UPF1-201ENST00000262803 ABCC13Q9NSE7 274 aa19.54■□□□□ 0.72
UPF1-201ENST00000262803 A0A087X1B8 175 aa19.54■□□□□ 0.72
UPF1-201ENST00000262803 TMEM150BA6NC51 233 aa19.54■□□□□ 0.72
UPF1-201ENST00000262803 ZCCHC18P0CG32 403 aa19.54■□□□□ 0.72
UPF1-201ENST00000262803 EIF4BP23588 611 aaKnown RBP19.54■□□□□ 0.72
UPF1-201ENST00000262803 CCT8P50990 548 aa19.54■□□□□ 0.72
UPF1-201ENST00000262803 FAM163AQ96GL9 167 aaPredicted RBP19.54■□□□□ 0.72
UPF1-201ENST00000262803 OLFM1Q99784 485 aa19.54■□□□□ 0.72
UPF1-201ENST00000262803 PARVBQ9HBI1 364 aa19.54■□□□□ 0.72
UPF1-201ENST00000262803 SNTG2Q9NY99 539 aa19.54■□□□□ 0.72
UPF1-201ENST00000262803 SNUPNO95149 360 aaKnown RBP19.53■□□□□ 0.72
UPF1-201ENST00000262803 SCNN1BP51168 640 aa19.53■□□□□ 0.72
UPF1-201ENST00000262803 PGM2Q96G03 612 aa19.53■□□□□ 0.72
UPF1-201ENST00000262803 DEPDC7Q96QD5 511 aa19.53■□□□□ 0.72
UPF1-201ENST00000262803 TSPAN16Q9UKR8 245 aa19.53■□□□□ 0.72
UPF1-201ENST00000262803 TNPO3Q9Y5L0 923 aaKnown RBP19.53■□□□□ 0.72
UPF1-201ENST00000262803 ATP6V1G2O95670 118 aa19.53■□□□□ 0.72
UPF1-201ENST00000262803 CXCR2P25025 360 aa19.53■□□□□ 0.72
UPF1-201ENST00000262803 SSTR1P30872 391 aa19.53■□□□□ 0.72
UPF1-201ENST00000262803 SPDYCQ5MJ68 293 aa19.53■□□□□ 0.72
UPF1-201ENST00000262803 USP45Q70EL2 814 aa19.53■□□□□ 0.72
UPF1-201ENST00000262803 C16orf62Q7Z3J2 963 aa19.53■□□□□ 0.72
UPF1-201ENST00000262803 TCP10LQ8TDR4 215 aa19.53■□□□□ 0.72
UPF1-201ENST00000262803 DPY30Q9C005 99 aa19.53■□□□□ 0.72
UPF1-201ENST00000262803 PREX1Q8TCU6 1659 aa19.53■□□□□ 0.72
UPF1-201ENST00000262803 PRR23AA6NEV1 266 aa19.53■□□□□ 0.72
UPF1-201ENST00000262803 TBC1D12O60347 775 aa19.53■□□□□ 0.72
UPF1-201ENST00000262803 BCL2L1Q07817 233 aa19.53■□□□□ 0.72
UPF1-201ENST00000262803 FUT11Q495W5 492 aa19.53■□□□□ 0.72
UPF1-201ENST00000262803 ZNF786Q8N393 782 aa19.53■□□□□ 0.72
UPF1-201ENST00000262803 HIC2Q96JB3 615 aa19.53■□□□□ 0.72
UPF1-201ENST00000262803 SERAC1Q96JX3 654 aa19.53■□□□□ 0.72
UPF1-201ENST00000262803 ANKRD27Q96NW4 1050 aa19.53■□□□□ 0.72
UPF1-201ENST00000262803 OSGEPL1Q9H4B0 414 aa19.53■□□□□ 0.72
UPF1-201ENST00000262803 DNAJC18Q9H819 358 aa19.53■□□□□ 0.72
UPF1-201ENST00000262803 SETD4Q9NVD3 440 aa19.53■□□□□ 0.72
UPF1-201ENST00000262803 MAP2K7O14733 419 aa19.53■□□□□ 0.72
UPF1-201ENST00000262803 UBDO15205 165 aa19.53■□□□□ 0.72
UPF1-201ENST00000262803 TNNI3P19429 210 aa19.53■□□□□ 0.72
UPF1-201ENST00000262803 PBLDP30039 288 aaPredicted RBP19.53■□□□□ 0.72
UPF1-201ENST00000262803 HPCAL1P37235 193 aa19.53■□□□□ 0.72
UPF1-201ENST00000262803 TCEA2Q15560 299 aa19.53■□□□□ 0.72
UPF1-201ENST00000262803 NBPF12Q5TAG4 269 aaPredicted RBP19.53■□□□□ 0.72
UPF1-201ENST00000262803 UBA2Q9UBT2 640 aaPredicted RBP19.53■□□□□ 0.72
UPF1-201ENST00000262803 SNX13Q9Y5W8 968 aa19.53■□□□□ 0.72
UPF1-201ENST00000262803 KIF20BQ96Q89 1820 aa19.52■□□□□ 0.72
UPF1-201ENST00000262803 ZNF23P17027 643 aa19.52■□□□□ 0.72
UPF1-201ENST00000262803 SERPINA4P29622 427 aa19.52■□□□□ 0.72
UPF1-201ENST00000262803 FSCN1Q16658 493 aaKnown RBP19.52■□□□□ 0.72
UPF1-201ENST00000262803 LYPLAL1Q5VWZ2 237 aa19.52■□□□□ 0.72
UPF1-201ENST00000262803 MAF1Q9H063 256 aa19.52■□□□□ 0.72
UPF1-201ENST00000262803 FAM50BQ9Y247 325 aa19.52■□□□□ 0.72
UPF1-201ENST00000262803 A0A0U1RQJ8 604 aa19.52■□□□□ 0.72
UPF1-201ENST00000262803 SMIM22K7EJ46 135 aa19.52■□□□□ 0.72
UPF1-201ENST00000262803 PDE2AO00408 941 aaPredicted RBP19.52■□□□□ 0.72
UPF1-201ENST00000262803 TDRD5Q8NAT2 981 aaKnown RBP19.52■□□□□ 0.72
UPF1-201ENST00000262803 MSRAQ9UJ68 235 aa19.52■□□□□ 0.72
UPF1-201ENST00000262803 FGF19O95750 216 aa19.52■□□□□ 0.72
UPF1-201ENST00000262803 POLR2EP19388 210 aaKnown RBP19.52■□□□□ 0.72
UPF1-201ENST00000262803 OR1E1P30953 314 aa19.52■□□□□ 0.72
UPF1-201ENST00000262803 ACVR2BQ13705 512 aa19.52■□□□□ 0.72
UPF1-201ENST00000262803 FAM171A1Q5VUB5 890 aa19.52■□□□□ 0.72
UPF1-201ENST00000262803 GLIS3Q8NEA6 775 aa19.52■□□□□ 0.72
UPF1-201ENST00000262803 ZSWIM2Q8NEG5 633 aa19.52■□□□□ 0.72
UPF1-201ENST00000262803 ATXN3LQ9H3M9 355 aa19.52■□□□□ 0.72
UPF1-201ENST00000262803 ADGRB2O60241 1585 aa19.52■□□□□ 0.71
UPF1-201ENST00000262803 CASTOR2A6NHX0 329 aa19.52■□□□□ 0.71
UPF1-201ENST00000262803 PLIN5Q00G26 463 aa19.52■□□□□ 0.71
UPF1-201ENST00000262803 SLC6A3Q01959 620 aa19.52■□□□□ 0.71
UPF1-201ENST00000262803 CRYMQ14894 314 aa19.52■□□□□ 0.71
UPF1-201ENST00000262803 TRMT11Q7Z4G4 463 aaKnown RBP19.52■□□□□ 0.71
UPF1-201ENST00000262803 FGD2Q7Z6J4 655 aa19.52■□□□□ 0.71
UPF1-201ENST00000262803 HTR3CQ8WXA8 447 aa19.52■□□□□ 0.71
UPF1-201ENST00000262803 POPDC2Q9HBU9 364 aa19.52■□□□□ 0.71
UPF1-201ENST00000262803 SERPINE1P05121 402 aa19.51■□□□□ 0.71
UPF1-201ENST00000262803 ARMC12Q5T9G4 340 aa19.51■□□□□ 0.71
UPF1-201ENST00000262803 ATL1Q8WXF7 558 aa19.51■□□□□ 0.71
UPF1-201ENST00000262803 RMND5BQ96G75 393 aaPredicted RBP19.51■□□□□ 0.71
UPF1-201ENST00000262803 TBL1YQ9BQ87 522 aa19.51■□□□□ 0.71
UPF1-201ENST00000262803 ARHGAP28Q9P2N2 729 aa19.51■□□□□ 0.71
UPF1-201ENST00000262803 USP20Q9Y2K6 914 aa19.51■□□□□ 0.71
UPF1-201ENST00000262803 TRDMT1O14717 391 aaKnown RBP19.51■□□□□ 0.71
UPF1-201ENST00000262803 NDST1P52848 882 aa19.51■□□□□ 0.71
UPF1-201ENST00000262803 CEP78Q5JTW2 689 aa19.51■□□□□ 0.71
UPF1-201ENST00000262803 GPR141Q7Z602 305 aa19.51■□□□□ 0.71
UPF1-201ENST00000262803 FBXO39Q8N4B4 442 aa19.51■□□□□ 0.71
UPF1-201ENST00000262803 OXCT2Q9BYC2 517 aaPredicted RBP19.51■□□□□ 0.71
UPF1-201ENST00000262803 UBP1Q9NZI7 540 aa19.51■□□□□ 0.71
UPF1-201ENST00000262803 SLC15A5A6NIM6 579 aa19.51■□□□□ 0.71
UPF1-201ENST00000262803 CPSF4O95639 269 aaKnown RBP19.51■□□□□ 0.71
UPF1-201ENST00000262803 TALDO1P37837 337 aa19.51■□□□□ 0.71
UPF1-201ENST00000262803 PRKCIP41743 596 aa19.51■□□□□ 0.71
UPF1-201ENST00000262803 FAM98BQ52LJ0 330 aaKnown RBP19.51■□□□□ 0.71
UPF1-201ENST00000262803 SVOPQ8N4V2 548 aa19.51■□□□□ 0.71
UPF1-201ENST00000262803 NRCAMQ92823 1304 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms