RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 PRRG1O14668 218 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 WFS1O76024 890 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 DHFRP00374 187 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 ITGAVP06756 1048 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 FGFR4P22455 802 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 GCNT1Q02742 428 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 TYSND1Q2T9J0 566 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 XKRXQ6PP77 449 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 CHPFQ8IZ52 775 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 DNERQ8NFT8 737 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 PPP1R10Q96QC0 940 aaKnown RBP6.2□□□□□ -1.42
VPS13D-201ENST00000011700 HCN3Q9P1Z3 774 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 PFDN2Q9UHV9 154 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 USP18Q9UMW8 372 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 ENTPD4Q9Y227 616 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 GNG14A0A1W2PPG7 69 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 PDE2AO00408 941 aaPredicted RBP6.2□□□□□ -1.42
VPS13D-201ENST00000011700 KPNA3O00505 521 aaPredicted RBP6.2□□□□□ -1.42
VPS13D-201ENST00000011700 PHGDHO43175 533 aaKnown RBP6.2□□□□□ -1.42
VPS13D-201ENST00000011700 WEE2P0C1S8 567 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 GP5P40197 560 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 OAZ1P54368 228 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 AP1S1P61966 158 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 KLHL26Q53HC5 615 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 C10orf62Q5T681 223 aaPredicted RBP6.2□□□□□ -1.42
VPS13D-201ENST00000011700 KLHL35Q6PF15 583 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 BRINP3Q76B58 766 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 STX12Q86Y82 276 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 CACTIN-AS1Q8N1I8 211 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 C1QTNF1Q9BXJ1 281 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 PCMTD2Q9NV79 361 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 PIM2Q9P1W9 311 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 TRPS1Q9UHF7 1281 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 SIK3Q9Y2K2 1263 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 PGM3O95394 542 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 GNL1P36915 607 aaPredicted RBP6.2□□□□□ -1.42
VPS13D-201ENST00000011700 DLG1Q12959 904 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 ZNF846Q147U1 533 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 LSM12Q3MHD2 195 aaKnown RBP6.2□□□□□ -1.42
VPS13D-201ENST00000011700 G2E3Q7L622 706 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 DHFR2Q86XF0 187 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 C8orf59Q8N0T1 100 aaPredicted RBP6.2□□□□□ -1.42
VPS13D-201ENST00000011700 SPAG16Q8N0X2 631 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 MRPL9Q9BYD2 267 aaKnown RBP6.2□□□□□ -1.42
VPS13D-201ENST00000011700 NARFQ9UHQ1 456 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 COL15A1P39059 1388 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 SNAP23O00161 211 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 TRIM66O15016 1216 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 KCNH1O95259 989 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 FGF19O95750 216 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 PAEPP09466 180 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 UMPSP11172 480 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 TTPAP49638 278 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 GALCP54803 685 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 ACAD10Q6JQN1 1059 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 ARID3BQ8IVW6 561 aaPredicted RBP6.2□□□□□ -1.42
VPS13D-201ENST00000011700 ADGRF4Q8IZF3 695 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 HS6ST3Q8IZP7 471 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 TCAIMQ8N3R3 496 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 TMCO6Q96DC7 493 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 APOPT1Q96IL0 206 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 CCDC3Q9BQI4 270 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 MROH8Q9H579 483 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 NAGPAQ9UK23 515 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 SCN4AP35499 1836 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 CACNA1SQ13698 1873 aa6.2□□□□□ -1.42
VPS13D-201ENST00000011700 KNDC1Q76NI1 1749 aa6.19□□□□□ -1.42
VPS13D-201ENST00000011700 TRAFD1O14545 582 aaPredicted RBP6.19□□□□□ -1.42
VPS13D-201ENST00000011700 CHADO15335 359 aa6.19□□□□□ -1.42
VPS13D-201ENST00000011700 HSD17B3P37058 310 aa6.19□□□□□ -1.42
VPS13D-201ENST00000011700 CHI3L2Q15782 390 aa6.19□□□□□ -1.42
VPS13D-201ENST00000011700 SLC15A2Q16348 729 aa6.19□□□□□ -1.42
VPS13D-201ENST00000011700 MEA1Q16626 185 aa6.19□□□□□ -1.42
VPS13D-201ENST00000011700 RABL6Q3YEC7 729 aaPredicted RBP6.19□□□□□ -1.42
VPS13D-201ENST00000011700 PABPC1LQ4VXU2 614 aaKnown RBP6.19□□□□□ -1.42
VPS13D-201ENST00000011700 TUBA3EQ6PEY2 450 aa6.19□□□□□ -1.42
VPS13D-201ENST00000011700 UTS2BQ765I0 119 aa6.19□□□□□ -1.42
VPS13D-201ENST00000011700 DNAJC10Q8IXB1 793 aa6.19□□□□□ -1.42
VPS13D-201ENST00000011700 LRRC17Q8N6Y2 441 aa6.19□□□□□ -1.42
VPS13D-201ENST00000011700 PPP1R14AQ96A00 147 aa6.19□□□□□ -1.42
VPS13D-201ENST00000011700 TMEM159Q96B96 161 aa6.19□□□□□ -1.42
VPS13D-201ENST00000011700 ITCHQ96J02 903 aa6.19□□□□□ -1.42
VPS13D-201ENST00000011700 TMEM47Q9BQJ4 181 aa6.19□□□□□ -1.42
VPS13D-201ENST00000011700 CDH9Q9ULB4 789 aa6.19□□□□□ -1.42
VPS13D-201ENST00000011700 SNX6Q9UNH7 406 aa6.19□□□□□ -1.42
VPS13D-201ENST00000011700 CHD3Q12873 2000 aaKnown RBP6.19□□□□□ -1.42
VPS13D-201ENST00000011700 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP6.19□□□□□ -1.42
VPS13D-201ENST00000011700 CCNDBP1O95273 360 aa6.19□□□□□ -1.42
VPS13D-201ENST00000011700 APBA3O96018 575 aa6.19□□□□□ -1.42
VPS13D-201ENST00000011700 IFNGP01579 166 aa6.19□□□□□ -1.42
VPS13D-201ENST00000011700 GPC1P35052 558 aa6.19□□□□□ -1.42
VPS13D-201ENST00000011700 MGAT5Q09328 741 aa6.19□□□□□ -1.42
VPS13D-201ENST00000011700 ZNF177Q13360 481 aaPredicted RBP6.19□□□□□ -1.42
VPS13D-201ENST00000011700 ZC3HC1Q86WB0 502 aaKnown RBP6.19□□□□□ -1.42
VPS13D-201ENST00000011700 SLC13A5Q86YT5 568 aaPredicted RBP6.19□□□□□ -1.42
VPS13D-201ENST00000011700 PCSK9Q8NBP7 692 aaKnown RBP6.19□□□□□ -1.42
VPS13D-201ENST00000011700 OTUD7AQ8TE49 926 aaPredicted RBP6.19□□□□□ -1.42
VPS13D-201ENST00000011700 NARS2Q96I59 477 aaKnown RBP6.19□□□□□ -1.42
VPS13D-201ENST00000011700 FAIM2Q9BWQ8 316 aa6.19□□□□□ -1.42
VPS13D-201ENST00000011700 PNPLA8Q9NP80 782 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms