RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 PGFP49763 221 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 RAP1GDS1P52306 607 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 DEFB107AQ8IZN7 70 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 CCNYQ8ND76 341 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 GRIN3AQ8TCU5 1115 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 ALKBH8Q96BT7 664 aaKnown RBP10.99□□□□□ -0.65
USP28-201ENST00000003302 CHRAC1Q9NRG0 131 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 PAPOLBQ9NRJ5 636 aaKnown RBP10.99□□□□□ -0.65
USP28-201ENST00000003302 LRCH1Q9Y2L9 728 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 BCLAF3A2AJT9 711 aaKnown RBP10.99□□□□□ -0.65
USP28-201ENST00000003302 CRHR1P34998 444 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 SERPINB5P36952 375 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 GRM1Q13255 1194 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 PRAMEF19Q5SWL8 479 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 ARHGAP36Q6ZRI8 547 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 TMEM110Q86TL2 294 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 DEFB106AQ8N104 65 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 PIWIL2Q8TC59 973 aaKnown RBP10.99□□□□□ -0.65
USP28-201ENST00000003302 STMN2Q93045 179 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 ZFP42Q96MM3 310 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 PHF12Q96QT6 1004 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 SLC4A5Q9BY07 1137 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.98□□□□□ -0.65
USP28-201ENST00000003302 CAPN8A6NHC0 703 aa10.98□□□□□ -0.65
USP28-201ENST00000003302 H3BNX3 289 aa10.98□□□□□ -0.65
USP28-201ENST00000003302 KLF11O14901 512 aa10.98□□□□□ -0.65
USP28-201ENST00000003302 PHGDHO43175 533 aaKnown RBP10.98□□□□□ -0.65
USP28-201ENST00000003302 FYNP06241 537 aa10.98□□□□□ -0.65
USP28-201ENST00000003302 ITGAXP20702 1163 aa10.98□□□□□ -0.65
USP28-201ENST00000003302 MPSTP25325 297 aa10.98□□□□□ -0.65
USP28-201ENST00000003302 PKNOX1P55347 436 aa10.98□□□□□ -0.65
USP28-201ENST00000003302 HSP90AA5PQ58FG0 334 aa10.98□□□□□ -0.65
USP28-201ENST00000003302 DCAF6Q58WW2 860 aa10.98□□□□□ -0.65
USP28-201ENST00000003302 USP13Q92995 863 aaPredicted RBP10.98□□□□□ -0.65
USP28-201ENST00000003302 DNAJC1Q96KC8 554 aaKnown RBP10.98□□□□□ -0.65
USP28-201ENST00000003302 C16orf70Q9BSU1 422 aa10.98□□□□□ -0.65
USP28-201ENST00000003302 KLC2Q9H0B6 622 aa10.98□□□□□ -0.65
USP28-201ENST00000003302 TAGLN3Q9UI15 199 aa10.98□□□□□ -0.65
USP28-201ENST00000003302 PRUNE2Q8WUY3 3088 aa10.98□□□□□ -0.65
USP28-201ENST00000003302 ATP9BO43861 1147 aa10.98□□□□□ -0.65
USP28-201ENST00000003302 GJA5P36382 358 aa10.98□□□□□ -0.65
USP28-201ENST00000003302 ADIGQ0VDE8 80 aa10.98□□□□□ -0.65
USP28-201ENST00000003302 NOMO2Q5JPE7 1267 aa10.98□□□□□ -0.65
USP28-201ENST00000003302 OSTM1Q86WC4 334 aa10.98□□□□□ -0.65
USP28-201ENST00000003302 DCLK2Q8N568 766 aa10.98□□□□□ -0.65
USP28-201ENST00000003302 CHST13Q8NET6 341 aa10.98□□□□□ -0.65
USP28-201ENST00000003302 HTR3CQ8WXA8 447 aa10.98□□□□□ -0.65
USP28-201ENST00000003302 OMDQ99983 421 aa10.98□□□□□ -0.65
USP28-201ENST00000003302 GPRC5DQ9NZD1 345 aa10.98□□□□□ -0.65
USP28-201ENST00000003302 NEMP2A6NFY4 417 aa10.98□□□□□ -0.65
USP28-201ENST00000003302 TCN1P20061 433 aaPredicted RBP10.98□□□□□ -0.65
USP28-201ENST00000003302 WDR75Q8IWA0 830 aaKnown RBP10.98□□□□□ -0.65
USP28-201ENST00000003302 MFSD6LQ8IWD5 586 aa10.98□□□□□ -0.65
USP28-201ENST00000003302 OLFM3Q96PB7 478 aa10.98□□□□□ -0.65
USP28-201ENST00000003302 LENG8Q96PV6 779 aaPredicted RBP10.98□□□□□ -0.65
USP28-201ENST00000003302 COG4Q9H9E3 785 aa10.98□□□□□ -0.65
USP28-201ENST00000003302 PCDHA11Q9Y5I1 949 aa10.98□□□□□ -0.65
USP28-201ENST00000003302 RPS6KL1Q9Y6S9 549 aa10.98□□□□□ -0.65
USP28-201ENST00000003302 MS4A2Q01362 244 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 PAQR9Q6ZVX9 377 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 CRLF3Q8IUI8 442 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 GCNAQ96QF7 691 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 ECSITQ9BQ95 431 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 FTHL17Q9BXU8 183 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 UBAP1Q9NZ09 502 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 POMPQ9Y244 141 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 DNAJC25-GNG10A0A024R161 153 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 A8MXQ7 604 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 MT-CO1P00395 513 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 CD68P34810 354 aaPredicted RBP10.97□□□□□ -0.65
USP28-201ENST00000003302 ZBTB17Q13105 803 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 DPYSL2Q16555 572 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 FSTL4Q6MZW2 842 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 SATL1Q86VE3 508 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 LINC01465Q8N7H1 131 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 CELF6Q96J87 481 aaKnown RBP10.97□□□□□ -0.65
USP28-201ENST00000003302 TSC22D3Q99576 134 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 PAAF1Q9BRP4 392 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 SNX15Q9NRS6 342 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 C9IYK1 514 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 GABRB3P28472 473 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 GJA9P57773 515 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 HEATR6Q6AI08 1181 aaKnown RBP10.97□□□□□ -0.65
USP28-201ENST00000003302 TAPT1Q6NXT6 567 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 TMEM151AQ8N4L1 468 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 ATXN3LQ9H3M9 355 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 SPON1Q9HCB6 807 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 WDR35Q9P2L0 1181 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 CROCCQ5TZA2 2017 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 G3V2L1 256 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 TFDP2Q14188 446 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 PIGZQ86VD9 579 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 LILRA2Q8N149 483 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 SPATA22Q8NHS9 363 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 SGF29Q96ES7 293 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 RPL10LQ96L21 214 aaKnown RBP10.97□□□□□ -0.65
USP28-201ENST00000003302 COPG2Q9UBF2 871 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 CDH22Q9UJ99 828 aa10.97□□□□□ -0.65
USP28-201ENST00000003302 TTC24A2A3L6 582 aaPredicted RBP10.96□□□□□ -0.65
USP28-201ENST00000003302 SERPINA6P08185 405 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms