RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 MLLT3P42568 568 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-216ENST00000637968 CDH15P55291 814 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 RPP38P78345 283 aaKnown RBP5.87□□□□□ -1.47
SCN1A-216ENST00000637968 CD83Q01151 205 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 APOFQ13790 326 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 CDK10Q15131 360 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 KIZQ2M2Z5 673 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 IZUMO3Q5VZ72 239 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 TTBK2Q6IQ55 1244 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-216ENST00000637968 PPP4R3CPQ6ZMV5 832 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 KIAA0408Q6ZU52 694 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 PIK3AP1Q6ZUJ8 805 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 OR7A2PQ8NGA2 310 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 AK8Q96MA6 479 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 USB1Q9BQ65 265 aaKnown RBP5.87□□□□□ -1.47
SCN1A-216ENST00000637968 TTYH3Q9C0H2 523 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 SLC24A2Q9UI40 661 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 CDH22Q9UJ99 828 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 PCDHGC3Q9UN70 934 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 CDC14AQ9UNH5 594 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 NIP7Q9Y221 180 aaKnown RBP eCLIP5.87□□□□□ -1.47
SCN1A-216ENST00000637968 CBY1Q9Y3M2 126 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 UGT2A1Q9Y4X1 527 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 SHPRHQ149N8 1683 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 MYO3BQ8WXR4 1341 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 CAPN14A8MX76 684 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 AKAP10O43572 662 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 SCO2O43819 266 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 NDUFS2O75306 463 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 PGK2P07205 417 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 C8BP07358 591 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 UQCRC1P31930 480 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 SEPHS1P49903 392 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 POLR2GP62487 172 aaKnown RBP eCLIP5.87□□□□□ -1.47
SCN1A-216ENST00000637968 PTPN12Q05209 780 aaKnown RBP5.87□□□□□ -1.47
SCN1A-216ENST00000637968 PCDH1Q08174 1060 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 UGP2Q16851 508 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 FAM91A1Q658Y4 838 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 SLFN13Q68D06 897 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 CHADLQ6NUI6 762 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 XKRXQ6PP77 449 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 ALYREFQ86V81 257 aaKnown RBP5.87□□□□□ -1.47
SCN1A-216ENST00000637968 CCDC60Q8IWA6 550 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-216ENST00000637968 OR10Z1Q8NGY1 313 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 SEC14L1Q92503 715 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 SNX19Q92543 992 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 E2F7Q96AV8 911 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 HES6Q96HZ4 224 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 HEXIM2Q96MH2 286 aaKnown RBP5.87□□□□□ -1.47
SCN1A-216ENST00000637968 BTBD2Q9BX70 525 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 TOR3AQ9H497 397 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 RPF2Q9H7B2 306 aaKnown RBP5.87□□□□□ -1.47
SCN1A-216ENST00000637968 BRD9Q9H8M2 597 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 EIF3LQ9Y262 564 aaKnown RBP5.87□□□□□ -1.47
SCN1A-216ENST00000637968 ZNF175Q9Y473 711 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 A2ML1A8K2U0 1454 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 SAMD9LQ8IVG5 1584 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 A0A0A6YYK5 440 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-216ENST00000637968 CCDC195A0A1B0GUA6 201 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 FAM237BA0A1B0GVD1 139 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 H0YJX3 145 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 H3BMQ9 156 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 ENPP3O14638 875 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 AIM2O14862 343 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 ACOX3O15254 700 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 TOP3BO95985 862 aaKnown RBP5.87□□□□□ -1.47
SCN1A-216ENST00000637968 IFNAR1P17181 557 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 ITGA2P17301 1181 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 BGNP21810 368 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 PSMC2P35998 433 aaKnown RBP5.87□□□□□ -1.47
SCN1A-216ENST00000637968 RAP1GAPP47736 663 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 ALDH3B2P48448 385 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 NFATC3Q12968 1075 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 SELPLGQ14242 412 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 PKN2Q16513 984 aaKnown RBP5.87□□□□□ -1.47
SCN1A-216ENST00000637968 PFKFB3Q16875 520 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-216ENST00000637968 FGD3Q5JSP0 725 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 ZNF425Q6IV72 752 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 ABRAXAS1Q6UWZ7 409 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 UNC5AQ6ZN44 842 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 FRMD7Q6ZUT3 714 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 ZC3H7AQ8IWR0 971 aaKnown RBP5.87□□□□□ -1.47
SCN1A-216ENST00000637968 CLYBLQ8N0X4 340 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 ZNF366Q8N895 744 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 LEMD2Q8NC56 503 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 TTC9Q92623 222 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 SCYL1Q96KG9 808 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 COG8Q96MW5 612 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 TXLNGYQ9BZA5 131 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 C1orf21Q9H246 121 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 PPA2Q9H2U2 334 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 TIGARQ9NQ88 270 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 RIC8BQ9NVN3 520 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 ADA2Q9NZK5 511 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 SNX7Q9UNH6 387 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 POMPQ9Y244 141 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 DGKBQ9Y6T7 804 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 EDC4Q6P2E9 1401 aaKnown RBP5.87□□□□□ -1.47
SCN1A-216ENST00000637968 XDHP47989 1333 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms