RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 DOCK4Q8N1I0 1966 aa18.92■□□□□ 0.62
CLN3-259ENST00000637551 KMT2BQ9UMN6 2715 aaPredicted RBP18.92■□□□□ 0.62
CLN3-259ENST00000637551 TBC1D3BA6NDS4 549 aa18.92■□□□□ 0.62
CLN3-259ENST00000637551 F5H5T6 163 aa18.92■□□□□ 0.62
CLN3-259ENST00000637551 GOLGA8SH3BPF8 625 aa18.92■□□□□ 0.62
CLN3-259ENST00000637551 DDX3XO00571 662 aaKnown RBP eCLIP18.92■□□□□ 0.62
CLN3-259ENST00000637551 PDGFRAP16234 1089 aa18.92■□□□□ 0.62
CLN3-259ENST00000637551 SLC6A11P48066 632 aa18.92■□□□□ 0.62
CLN3-259ENST00000637551 ZNF143P52747 638 aaPredicted RBP18.92■□□□□ 0.62
CLN3-259ENST00000637551 PITX1P78337 314 aaPredicted RBP18.92■□□□□ 0.62
CLN3-259ENST00000637551 DEUP1Q05D60 604 aa18.92■□□□□ 0.62
CLN3-259ENST00000637551 SLC12A1Q13621 1099 aa18.92■□□□□ 0.62
CLN3-259ENST00000637551 EOGTQ5NDL2 527 aa18.92■□□□□ 0.62
CLN3-259ENST00000637551 Q6ZS52 159 aa18.92■□□□□ 0.62
CLN3-259ENST00000637551 CCDC117Q8IWD4 279 aaPredicted RBP18.92■□□□□ 0.62
CLN3-259ENST00000637551 ZBTB44Q8NCP5 570 aa18.92■□□□□ 0.62
CLN3-259ENST00000637551 FIBINQ8TAL6 211 aa18.92■□□□□ 0.62
CLN3-259ENST00000637551 RNF34Q969K3 372 aa18.92■□□□□ 0.62
CLN3-259ENST00000637551 NTAN1Q96AB6 310 aa18.92■□□□□ 0.62
CLN3-259ENST00000637551 RMDN1Q96DB5 314 aa18.92■□□□□ 0.62
CLN3-259ENST00000637551 MRPL47Q9HD33 250 aaKnown RBP18.92■□□□□ 0.62
CLN3-259ENST00000637551 ZNHIT6Q9NWK9 470 aaKnown RBP18.92■□□□□ 0.62
CLN3-259ENST00000637551 ZSCAN32Q9NX65 697 aa18.92■□□□□ 0.62
CLN3-259ENST00000637551 ATG2BQ96BY7 2078 aa18.92■□□□□ 0.62
CLN3-259ENST00000637551 A0A1B0GVM2 712 aa18.91■□□□□ 0.62
CLN3-259ENST00000637551 TCAF2A6NFQ2 919 aa18.91■□□□□ 0.62
CLN3-259ENST00000637551 EIF3CLB5ME19 914 aaKnown RBP18.91■□□□□ 0.62
CLN3-259ENST00000637551 MFAP3LO75121 409 aa18.91■□□□□ 0.62
CLN3-259ENST00000637551 KRT37O76014 449 aa18.91■□□□□ 0.62
CLN3-259ENST00000637551 SP9P0CG40 484 aa18.91■□□□□ 0.62
CLN3-259ENST00000637551 TACR2P21452 398 aa18.91■□□□□ 0.62
CLN3-259ENST00000637551 SLC6A4P31645 630 aa18.91■□□□□ 0.62
CLN3-259ENST00000637551 DGKEP52429 567 aa18.91■□□□□ 0.62
CLN3-259ENST00000637551 MAPK8IP2Q13387 824 aaPredicted RBP18.91■□□□□ 0.62
CLN3-259ENST00000637551 ENPP2Q13822 863 aa18.91■□□□□ 0.62
CLN3-259ENST00000637551 ACAP1Q15027 740 aa18.91■□□□□ 0.62
CLN3-259ENST00000637551 ARL13BQ3SXY8 428 aa18.91■□□□□ 0.62
CLN3-259ENST00000637551 C10orf76Q5T2E6 689 aa18.91■□□□□ 0.62
CLN3-259ENST00000637551 NAIF1Q69YI7 327 aaPredicted RBP18.91■□□□□ 0.62
CLN3-259ENST00000637551 CHST9Q7L1S5 443 aa18.91■□□□□ 0.62
CLN3-259ENST00000637551 CHSY1Q86X52 802 aa18.91■□□□□ 0.62
CLN3-259ENST00000637551 AHI1Q8N157 1196 aa18.91■□□□□ 0.62
CLN3-259ENST00000637551 KDM1BQ8NB78 822 aa18.91■□□□□ 0.62
CLN3-259ENST00000637551 RPLP0P6Q8NHW5 317 aa18.91■□□□□ 0.62
CLN3-259ENST00000637551 PRICKLE1Q96MT3 831 aaPredicted RBP18.91■□□□□ 0.62
CLN3-259ENST00000637551 TBCBQ99426 244 aa18.91■□□□□ 0.62
CLN3-259ENST00000637551 EIF3CQ99613 913 aaKnown RBP18.91■□□□□ 0.62
CLN3-259ENST00000637551 CNPY3Q9BT09 278 aa18.91■□□□□ 0.62
CLN3-259ENST00000637551 TRIM5Q9C035 493 aa18.91■□□□□ 0.62
CLN3-259ENST00000637551 EBF1Q9UH73 591 aa18.91■□□□□ 0.62
CLN3-259ENST00000637551 LCMT1Q9UIC8 334 aa18.91■□□□□ 0.62
CLN3-259ENST00000637551 TPRP12270 2363 aaKnown RBP18.91■□□□□ 0.62
CLN3-259ENST00000637551 K7ESF4 209 aa18.9■□□□□ 0.62
CLN3-259ENST00000637551 C7P10643 843 aa18.9■□□□□ 0.62
CLN3-259ENST00000637551 GPD1P21695 349 aa18.9■□□□□ 0.62
CLN3-259ENST00000637551 RNASE9P60153 205 aaKnown RBP18.9■□□□□ 0.62
CLN3-259ENST00000637551 SCAPQ12770 1279 aa18.9■□□□□ 0.62
CLN3-259ENST00000637551 TBX2Q13207 712 aaPredicted RBP18.9■□□□□ 0.62
CLN3-259ENST00000637551 NME3Q13232 169 aa18.9■□□□□ 0.62
CLN3-259ENST00000637551 C2CD6Q53TS8 623 aa18.9■□□□□ 0.62
CLN3-259ENST00000637551 TRNP1Q6NT89 227 aa18.9■□□□□ 0.62
CLN3-259ENST00000637551 DGLUCYQ7Z3D6 616 aa18.9■□□□□ 0.62
CLN3-259ENST00000637551 NAT16Q8N8M0 369 aa18.9■□□□□ 0.62
CLN3-259ENST00000637551 IL17RCQ8NAC3 791 aa18.9■□□□□ 0.62
CLN3-259ENST00000637551 RXFP2Q8WXD0 754 aa18.9■□□□□ 0.62
CLN3-259ENST00000637551 ADAMTS1Q9UHI8 967 aa18.9■□□□□ 0.62
CLN3-259ENST00000637551 SLC8A2Q9UPR5 921 aa18.9■□□□□ 0.62
CLN3-259ENST00000637551 CKAP5Q14008 2032 aa18.9■□□□□ 0.62
CLN3-259ENST00000637551 IGLV3-10A0A075B6K4 115 aa18.89■□□□□ 0.61
CLN3-259ENST00000637551 CXorf51AA0A1B0GTR3 108 aa18.89■□□□□ 0.61
CLN3-259ENST00000637551 LILRB5O75023 590 aa18.89■□□□□ 0.61
CLN3-259ENST00000637551 PAGE1O75459 146 aa18.89■□□□□ 0.61
CLN3-259ENST00000637551 CLDN11O75508 207 aa18.89■□□□□ 0.61
CLN3-259ENST00000637551 LUC7L3O95232 432 aaKnown RBP18.89■□□□□ 0.61
CLN3-259ENST00000637551 MOCS2O96007 188 aaPredicted RBP18.89■□□□□ 0.61
CLN3-259ENST00000637551 FTLP02792 175 aaPredicted RBP18.89■□□□□ 0.61
CLN3-259ENST00000637551 RRM1P23921 792 aa18.89■□□□□ 0.61
CLN3-259ENST00000637551 RFC1P35251 1148 aaPredicted RBP18.89■□□□□ 0.61
CLN3-259ENST00000637551 VASPP50552 380 aaPredicted RBP18.89■□□□□ 0.61
CLN3-259ENST00000637551 KDSRQ06136 332 aa18.89■□□□□ 0.61
CLN3-259ENST00000637551 MAMLD1Q13495 774 aa18.89■□□□□ 0.61
CLN3-259ENST00000637551 CCDC14Q49A88 953 aa18.89■□□□□ 0.61
CLN3-259ENST00000637551 DCUN1D2Q6PH85 259 aa18.89■□□□□ 0.61
CLN3-259ENST00000637551 WDR59Q6PJI9 974 aa18.89■□□□□ 0.61
CLN3-259ENST00000637551 ZNF513Q8N8E2 541 aaPredicted RBP18.89■□□□□ 0.61
CLN3-259ENST00000637551 CFAP57Q96MR6 1250 aa18.89■□□□□ 0.61
CLN3-259ENST00000637551 GABRG3Q99928 467 aa18.89■□□□□ 0.61
CLN3-259ENST00000637551 TKTL2Q9H0I9 626 aa18.89■□□□□ 0.61
CLN3-259ENST00000637551 ABHD10Q9NUJ1 306 aa18.89■□□□□ 0.61
CLN3-259ENST00000637551 ARHGAP20Q9P2F6 1191 aa18.89■□□□□ 0.61
CLN3-259ENST00000637551 PLXND1Q9Y4D7 1925 aa18.89■□□□□ 0.61
CLN3-259ENST00000637551 SPAG17Q6Q759 2223 aa18.88■□□□□ 0.61
CLN3-259ENST00000637551 TBL1XO60907 577 aa18.88■□□□□ 0.61
CLN3-259ENST00000637551 APBB3O95704 486 aa18.88■□□□□ 0.61
CLN3-259ENST00000637551 ASLP04424 464 aa18.88■□□□□ 0.61
CLN3-259ENST00000637551 PABPC1P11940 636 aaKnown RBP18.88■□□□□ 0.61
CLN3-259ENST00000637551 HLA-FP30511 346 aa18.88■□□□□ 0.61
CLN3-259ENST00000637551 NTSR1P30989 418 aa18.88■□□□□ 0.61
CLN3-259ENST00000637551 HTR7P34969 479 aa18.88■□□□□ 0.61
CLN3-259ENST00000637551 SATB1Q01826 763 aa18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms