RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 HMBSP08397 361 aa17.38■□□□□ 0.37
CLN3-252ENST00000636907 SPATA31D3P0C874 917 aa17.38■□□□□ 0.37
CLN3-252ENST00000636907 HOXC13P31276 330 aa17.38■□□□□ 0.37
CLN3-252ENST00000636907 ACTN2P35609 894 aa17.38■□□□□ 0.37
CLN3-252ENST00000636907 BMPR1AP36894 532 aa17.38■□□□□ 0.37
CLN3-252ENST00000636907 NRG1Q02297 640 aaPredicted RBP17.38■□□□□ 0.37
CLN3-252ENST00000636907 PDK1Q15118 436 aa17.38■□□□□ 0.37
CLN3-252ENST00000636907 PRKD1Q15139 912 aaPredicted RBP17.38■□□□□ 0.37
CLN3-252ENST00000636907 TAF12Q16514 161 aa17.38■□□□□ 0.37
CLN3-252ENST00000636907 ANKRD22Q5VYY1 191 aa17.38■□□□□ 0.37
CLN3-252ENST00000636907 SPATA31D4Q6ZUB0 917 aa17.38■□□□□ 0.37
CLN3-252ENST00000636907 PPIL6Q8IXY8 311 aa17.38■□□□□ 0.37
CLN3-252ENST00000636907 ZNF276Q8N554 614 aa17.38■□□□□ 0.37
CLN3-252ENST00000636907 NAT8LQ8N9F0 302 aa17.38■□□□□ 0.37
CLN3-252ENST00000636907 CCDC110Q8TBZ0 833 aa17.38■□□□□ 0.37
CLN3-252ENST00000636907 HTR3CQ8WXA8 447 aa17.38■□□□□ 0.37
CLN3-252ENST00000636907 TBC1D31Q96DN5 1066 aa17.38■□□□□ 0.37
CLN3-252ENST00000636907 TRMT2BQ96GJ1 504 aaKnown RBP17.38■□□□□ 0.37
CLN3-252ENST00000636907 C1orf74Q96LT6 269 aa17.38■□□□□ 0.37
CLN3-252ENST00000636907 RUFY1Q96T51 708 aa17.38■□□□□ 0.37
CLN3-252ENST00000636907 HTATIP2Q9BUP3 242 aa17.38■□□□□ 0.37
CLN3-252ENST00000636907 TSPYL1Q9H0U9 437 aa17.38■□□□□ 0.37
CLN3-252ENST00000636907 PRDM12Q9H4Q4 367 aa17.38■□□□□ 0.37
CLN3-252ENST00000636907 MAFFQ9ULX9 164 aa17.38■□□□□ 0.37
CLN3-252ENST00000636907 RAD54BQ9Y620 910 aa17.38■□□□□ 0.37
CLN3-252ENST00000636907 NFS1Q9Y697 457 aa17.38■□□□□ 0.37
CLN3-252ENST00000636907 E9PAM4 449 aa17.37■□□□□ 0.37
CLN3-252ENST00000636907 PPP1R12AO14974 1030 aaPredicted RBP17.37■□□□□ 0.37
CLN3-252ENST00000636907 TGM5O43548 720 aa17.37■□□□□ 0.37
CLN3-252ENST00000636907 IGLV3-27P01718 113 aa17.37■□□□□ 0.37
CLN3-252ENST00000636907 HTR7P34969 479 aa17.37■□□□□ 0.37
CLN3-252ENST00000636907 CTNNB1P35222 781 aa17.37■□□□□ 0.37
CLN3-252ENST00000636907 MLLT6P55198 1093 aaPredicted RBP17.37■□□□□ 0.37
CLN3-252ENST00000636907 BASP1P80723 227 aaKnown RBP17.37■□□□□ 0.37
CLN3-252ENST00000636907 AP1B1Q10567 949 aa17.37■□□□□ 0.37
CLN3-252ENST00000636907 VEPH1Q14D04 833 aa17.37■□□□□ 0.37
CLN3-252ENST00000636907 HSP90B2PQ58FF3 399 aa17.37■□□□□ 0.37
CLN3-252ENST00000636907 LRIG3Q6UXM1 1119 aa17.37■□□□□ 0.37
CLN3-252ENST00000636907 TMC7Q7Z402 723 aa17.37■□□□□ 0.37
CLN3-252ENST00000636907 ATP6V0D2Q8N8Y2 350 aa17.37■□□□□ 0.37
CLN3-252ENST00000636907 OR2W6PQ8NHA6 318 aa17.37■□□□□ 0.37
CLN3-252ENST00000636907 CDK5RAP1Q96SZ6 601 aaKnown RBP17.37■□□□□ 0.37
CLN3-252ENST00000636907 SH3GL2Q99962 352 aa17.37■□□□□ 0.37
CLN3-252ENST00000636907 LBHD1Q9BQE6 289 aaPredicted RBP17.37■□□□□ 0.37
CLN3-252ENST00000636907 FOXP3Q9BZS1 431 aa17.37■□□□□ 0.37
CLN3-252ENST00000636907 MTIF3Q9H2K0 278 aaKnown RBP17.37■□□□□ 0.37
CLN3-252ENST00000636907 CDC42EP4Q9H3Q1 356 aaKnown RBP17.37■□□□□ 0.37
CLN3-252ENST00000636907 ALG13Q9NP73 1137 aaKnown RBP17.37■□□□□ 0.37
CLN3-252ENST00000636907 MED4Q9NPJ6 270 aa17.37■□□□□ 0.37
CLN3-252ENST00000636907 TCRBV7S3A2A0A539 114 aa17.36■□□□□ 0.37
CLN3-252ENST00000636907 C5orf60A6NFR6 353 aa17.36■□□□□ 0.37
CLN3-252ENST00000636907 GCATO75600 419 aa17.36■□□□□ 0.37
CLN3-252ENST00000636907 SERPINB6P35237 376 aa17.36■□□□□ 0.37
CLN3-252ENST00000636907 ATP5C1P36542 298 aaKnown RBP17.36■□□□□ 0.37
CLN3-252ENST00000636907 TUBP50607 506 aa17.36■□□□□ 0.37
CLN3-252ENST00000636907 ERVFC1P60507 584 aa17.36■□□□□ 0.37
CLN3-252ENST00000636907 RING1Q06587 406 aa17.36■□□□□ 0.37
CLN3-252ENST00000636907 DNAJB7Q7Z6W7 309 aaPredicted RBP17.36■□□□□ 0.37
CLN3-252ENST00000636907 HOOK3Q86VS8 718 aa17.36■□□□□ 0.37
CLN3-252ENST00000636907 CCNYQ8ND76 341 aa17.36■□□□□ 0.37
CLN3-252ENST00000636907 KLHL5Q96PQ7 755 aa17.36■□□□□ 0.37
CLN3-252ENST00000636907 KLC2Q9H0B6 622 aa17.36■□□□□ 0.37
CLN3-252ENST00000636907 TRPM5Q9NZQ8 1165 aa17.36■□□□□ 0.37
CLN3-252ENST00000636907 DNMT3LQ9UJW3 386 aa17.36■□□□□ 0.37
CLN3-252ENST00000636907 GOLGA8MH3BSY2 632 aa17.36■□□□□ 0.37
CLN3-252ENST00000636907 FGF10O15520 208 aaPredicted RBP17.36■□□□□ 0.37
CLN3-252ENST00000636907 RIPK2O43353 540 aa17.36■□□□□ 0.37
CLN3-252ENST00000636907 TMEM63AO94886 807 aa17.36■□□□□ 0.37
CLN3-252ENST00000636907 CSPG5O95196 566 aa17.36■□□□□ 0.37
CLN3-252ENST00000636907 EPHB3P54753 998 aa17.36■□□□□ 0.37
CLN3-252ENST00000636907 GAD2Q05329 585 aa17.36■□□□□ 0.37
CLN3-252ENST00000636907 MS4A13Q5J8X5 152 aa17.36■□□□□ 0.37
CLN3-252ENST00000636907 HECTD3Q5T447 861 aa17.36■□□□□ 0.37
CLN3-252ENST00000636907 TRMT10CQ7L0Y3 403 aaKnown RBP17.36■□□□□ 0.37
CLN3-252ENST00000636907 TADA2BQ86TJ2 420 aa17.36■□□□□ 0.37
CLN3-252ENST00000636907 PSMG2Q969U7 264 aa17.36■□□□□ 0.37
CLN3-252ENST00000636907 P2RY11Q96G91 374 aa17.36■□□□□ 0.37
CLN3-252ENST00000636907 BTN2A3PQ96KV6 586 aa17.36■□□□□ 0.37
CLN3-252ENST00000636907 RBM15Q96T37 977 aaKnown RBP eCLIP17.36■□□□□ 0.37
CLN3-252ENST00000636907 TCF25Q9BQ70 676 aa17.36■□□□□ 0.37
CLN3-252ENST00000636907 CATSPERBQ9H7T0 1116 aa17.36■□□□□ 0.37
CLN3-252ENST00000636907 ENTPD7Q9NQZ7 604 aa17.36■□□□□ 0.37
CLN3-252ENST00000636907 RAB6BQ9NRW1 208 aa17.36■□□□□ 0.37
CLN3-252ENST00000636907 SLC12A6Q9UHW9 1150 aa17.36■□□□□ 0.37
CLN3-252ENST00000636907 HBS1LQ9Y450 684 aaKnown RBP17.36■□□□□ 0.37
CLN3-252ENST00000636907 LINC01553A4QN01 128 aa17.35■□□□□ 0.37
CLN3-252ENST00000636907 NCAM2O15394 837 aa17.35■□□□□ 0.37
CLN3-252ENST00000636907 COCHO43405 550 aa17.35■□□□□ 0.37
CLN3-252ENST00000636907 RRP9O43818 475 aaKnown RBP17.35■□□□□ 0.37
CLN3-252ENST00000636907 OPA1O60313 960 aa17.35■□□□□ 0.37
CLN3-252ENST00000636907 KPNA1P52294 538 aaPredicted RBP17.35■□□□□ 0.37
CLN3-252ENST00000636907 CBX1P83916 185 aa17.35■□□□□ 0.37
CLN3-252ENST00000636907 GALNT2Q10471 571 aa17.35■□□□□ 0.37
CLN3-252ENST00000636907 SLC29A2Q14542 456 aa17.35■□□□□ 0.37
CLN3-252ENST00000636907 KCNJ11Q14654 390 aa17.35■□□□□ 0.37
CLN3-252ENST00000636907 FAXCQ5TGI0 409 aa17.35■□□□□ 0.37
CLN3-252ENST00000636907 DENND2CQ68D51 928 aa17.35■□□□□ 0.37
CLN3-252ENST00000636907 LILRA6Q6PI73 481 aa17.35■□□□□ 0.37
CLN3-252ENST00000636907 SPRED2Q7Z698 418 aa17.35■□□□□ 0.37
CLN3-252ENST00000636907 ZNF683Q8IZ20 524 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms