RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 MBLAC2Q68D91 279 aa19.15■□□□□ 0.66
CLN3-241ENST00000635861 SMYD5Q6GMV2 418 aa19.15■□□□□ 0.66
CLN3-241ENST00000635861 NAXDQ8IW45 347 aa19.15■□□□□ 0.66
CLN3-241ENST00000635861 TRIM59Q8IWR1 403 aa19.15■□□□□ 0.66
CLN3-241ENST00000635861 ZCCHC9Q8N567 271 aaKnown RBP19.15■□□□□ 0.66
CLN3-241ENST00000635861 KDM1BQ8NB78 822 aa19.15■□□□□ 0.66
CLN3-241ENST00000635861 HJURPQ8NCD3 748 aaPredicted RBP19.15■□□□□ 0.66
CLN3-241ENST00000635861 STK32AQ8WU08 396 aa19.15■□□□□ 0.66
CLN3-241ENST00000635861 NELFBQ8WX92 580 aa19.15■□□□□ 0.66
CLN3-241ENST00000635861 ZSWIM1Q9BR11 485 aa19.15■□□□□ 0.66
CLN3-241ENST00000635861 ZMIZ1Q9ULJ6 1067 aa19.15■□□□□ 0.66
CLN3-241ENST00000635861 TLR6Q9Y2C9 796 aa19.15■□□□□ 0.66
CLN3-241ENST00000635861 PCDHB9Q9Y5E1 797 aa19.15■□□□□ 0.66
CLN3-241ENST00000635861 PPP1R3GB7ZBB8 358 aa19.14■□□□□ 0.65
CLN3-241ENST00000635861 HYAL3O43820 417 aaPredicted RBP19.14■□□□□ 0.65
CLN3-241ENST00000635861 TBL1XO60907 577 aa19.14■□□□□ 0.65
CLN3-241ENST00000635861 GABBR2O75899 941 aa19.14■□□□□ 0.65
CLN3-241ENST00000635861 TOP3BO95985 862 aaKnown RBP19.14■□□□□ 0.65
CLN3-241ENST00000635861 ASLP04424 464 aa19.14■□□□□ 0.65
CLN3-241ENST00000635861 SPINK2P20155 84 aa19.14■□□□□ 0.65
CLN3-241ENST00000635861 KCNH2Q12809 1159 aa19.14■□□□□ 0.65
CLN3-241ENST00000635861 MORC3Q14149 939 aa19.14■□□□□ 0.65
CLN3-241ENST00000635861 TRIP6Q15654 476 aaKnown RBP19.14■□□□□ 0.65
CLN3-241ENST00000635861 TTC31Q49AM3 519 aaPredicted RBP19.14■□□□□ 0.65
CLN3-241ENST00000635861 OR2I1PQ8NGU4 316 aa19.14■□□□□ 0.65
CLN3-241ENST00000635861 FIBINQ8TAL6 211 aa19.14■□□□□ 0.65
CLN3-241ENST00000635861 FAM81BQ96LP2 452 aa19.14■□□□□ 0.65
CLN3-241ENST00000635861 MIR1-1HGQ9H1L0 117 aa19.14■□□□□ 0.65
CLN3-241ENST00000635861 PCDHGB2Q9Y5G2 931 aa19.14■□□□□ 0.65
CLN3-241ENST00000635861 DSPP15924 2871 aaKnown RBP19.13■□□□□ 0.65
CLN3-241ENST00000635861 MED7O43513 233 aa19.13■□□□□ 0.65
CLN3-241ENST00000635861 FGFR1OPO95684 399 aaKnown RBP19.13■□□□□ 0.65
CLN3-241ENST00000635861 AFPP02771 609 aaKnown RBP19.13■□□□□ 0.65
CLN3-241ENST00000635861 DNTTP04053 509 aa19.13■□□□□ 0.65
CLN3-241ENST00000635861 HLA-EP13747 358 aa19.13■□□□□ 0.65
CLN3-241ENST00000635861 MATKP42679 507 aa19.13■□□□□ 0.65
CLN3-241ENST00000635861 GPD2P43304 727 aa19.13■□□□□ 0.65
CLN3-241ENST00000635861 SFSWAPQ12872 951 aaKnown RBP19.13■□□□□ 0.65
CLN3-241ENST00000635861 KLHL10Q6JEL2 608 aa19.13■□□□□ 0.65
CLN3-241ENST00000635861 ENOSF1Q7L5Y1 443 aa19.13■□□□□ 0.65
CLN3-241ENST00000635861 RAB44Q7Z6P3 723 aaPredicted RBP19.13■□□□□ 0.65
CLN3-241ENST00000635861 GLRX5Q86SX6 157 aa19.13■□□□□ 0.65
CLN3-241ENST00000635861 MFN1Q8IWA4 741 aa19.13■□□□□ 0.65
CLN3-241ENST00000635861 CCDC117Q8IWD4 279 aaPredicted RBP19.13■□□□□ 0.65
CLN3-241ENST00000635861 C1orf216Q8TAB5 229 aa19.13■□□□□ 0.65
CLN3-241ENST00000635861 CYB5D2Q8WUJ1 264 aa19.13■□□□□ 0.65
CLN3-241ENST00000635861 KAT5Q92993 513 aa19.13■□□□□ 0.65
CLN3-241ENST00000635861 TTC17Q96AE7 1141 aa19.13■□□□□ 0.65
CLN3-241ENST00000635861 BTBD1Q9H0C5 482 aa19.13■□□□□ 0.65
CLN3-241ENST00000635861 SGK2Q9HBY8 427 aa19.13■□□□□ 0.65
CLN3-241ENST00000635861 PRSS16Q9NQE7 514 aa19.13■□□□□ 0.65
CLN3-241ENST00000635861 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.13■□□□□ 0.65
CLN3-241ENST00000635861 PKD1L2Q7Z442 2459 aa19.13■□□□□ 0.65
CLN3-241ENST00000635861 SPEGQ15772 3267 aa19.12■□□□□ 0.65
CLN3-241ENST00000635861 SH3BP5O60239 455 aa19.12■□□□□ 0.65
CLN3-241ENST00000635861 SLC6A4P31645 630 aa19.12■□□□□ 0.65
CLN3-241ENST00000635861 SGSHP51688 502 aa19.12■□□□□ 0.65
CLN3-241ENST00000635861 AFF3P51826 1226 aaKnown RBP19.12■□□□□ 0.65
CLN3-241ENST00000635861 ST8SIA6P61647 398 aa19.12■□□□□ 0.65
CLN3-241ENST00000635861 PAK1Q13153 545 aa19.12■□□□□ 0.65
CLN3-241ENST00000635861 ARID5BQ14865 1188 aa19.12■□□□□ 0.65
CLN3-241ENST00000635861 ISM2Q6H9L7 571 aa19.12■□□□□ 0.65
CLN3-241ENST00000635861 RFWD3Q6PCD5 774 aa19.12■□□□□ 0.65
CLN3-241ENST00000635861 USP30Q70CQ3 517 aa19.12■□□□□ 0.65
CLN3-241ENST00000635861 RRAGAQ7L523 313 aa19.12■□□□□ 0.65
CLN3-241ENST00000635861 ARHGEF19Q8IW93 802 aa19.12■□□□□ 0.65
CLN3-241ENST00000635861 DQX1Q8TE96 717 aaKnown RBP19.12■□□□□ 0.65
CLN3-241ENST00000635861 CLEC4CQ8WTT0 213 aa19.12■□□□□ 0.65
CLN3-241ENST00000635861 SLC39A13Q96H72 371 aa19.12■□□□□ 0.65
CLN3-241ENST00000635861 FCRL2Q96LA5 508 aaPredicted RBP19.12■□□□□ 0.65
CLN3-241ENST00000635861 EIF2B4Q9UI10 523 aaKnown RBP19.12■□□□□ 0.65
CLN3-241ENST00000635861 PLXNB3Q9ULL4 1909 aa19.12■□□□□ 0.65
CLN3-241ENST00000635861 PLXNA2O75051 1894 aa19.12■□□□□ 0.65
CLN3-241ENST00000635861 FYNP06241 537 aa19.11■□□□□ 0.65
CLN3-241ENST00000635861 BMP6P22004 513 aa19.11■□□□□ 0.65
CLN3-241ENST00000635861 CD70P32970 193 aa19.11■□□□□ 0.65
CLN3-241ENST00000635861 RPS14P62263 151 aaKnown RBP19.11■□□□□ 0.65
CLN3-241ENST00000635861 FAM193AP78312 1265 aa19.11■□□□□ 0.65
CLN3-241ENST00000635861 TEAD4Q15561 434 aa19.11■□□□□ 0.65
CLN3-241ENST00000635861 ZNF776Q68DI1 518 aaPredicted RBP19.11■□□□□ 0.65
CLN3-241ENST00000635861 CACUL1Q86Y37 369 aa19.11■□□□□ 0.65
CLN3-241ENST00000635861 ADAMTS14Q8WXS8 1223 aa19.11■□□□□ 0.65
CLN3-241ENST00000635861 LMLNQ96KR4 655 aa19.11■□□□□ 0.65
CLN3-241ENST00000635861 MIS12Q9H081 205 aa19.11■□□□□ 0.65
CLN3-241ENST00000635861 GAREM1Q9H706 876 aa19.11■□□□□ 0.65
CLN3-241ENST00000635861 CTNND2Q9UQB3 1225 aa19.11■□□□□ 0.65
CLN3-241ENST00000635861 ZBTB32Q9Y2Y4 487 aaPredicted RBP19.11■□□□□ 0.65
CLN3-241ENST00000635861 FREM2Q5SZK8 3169 aa19.11■□□□□ 0.65
CLN3-241ENST00000635861 PIK3R2O00459 728 aa19.1■□□□□ 0.65
CLN3-241ENST00000635861 SEMA4FO95754 770 aa19.1■□□□□ 0.65
CLN3-241ENST00000635861 SRPRAP08240 638 aaKnown RBP19.1■□□□□ 0.65
CLN3-241ENST00000635861 ACSL1P33121 698 aa19.1■□□□□ 0.65
CLN3-241ENST00000635861 GRIA4P48058 902 aa19.1■□□□□ 0.65
CLN3-241ENST00000635861 MS4A13Q5J8X5 152 aa19.1■□□□□ 0.65
CLN3-241ENST00000635861 NADSYN1Q6IA69 706 aa19.1■□□□□ 0.65
CLN3-241ENST00000635861 DBX2Q6ZNG2 339 aa19.1■□□□□ 0.65
CLN3-241ENST00000635861 FAM124AQ86V42 546 aa19.1■□□□□ 0.65
CLN3-241ENST00000635861 SCUBE3Q8IX30 993 aa19.1■□□□□ 0.65
CLN3-241ENST00000635861 WFDC5Q8TCV5 224 aa19.1■□□□□ 0.65
CLN3-241ENST00000635861 FAM149B1Q96BN6 582 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms