RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 IRGCQ6NXR0 463 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 C16orf46Q6P387 395 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 CASC4Q6P4E1 433 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 WDR75Q8IWA0 830 aaKnown RBP13.12□□□□□ -0.31
LINC00540-203ENST00000631321 SCG3Q8WXD2 468 aaKnown RBP13.12□□□□□ -0.31
LINC00540-203ENST00000631321 FAM161BQ96MY7 647 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 FERMT1Q9BQL6 677 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 EBF4Q9BQW3 602 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 SLC17A6Q9P2U8 582 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.12□□□□□ -0.31
LINC00540-203ENST00000631321 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.12□□□□□ -0.31
LINC00540-203ENST00000631321 SMIM28A0A1B0GU29 152 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 PRR5-ARHGAP8B1AHC4 643 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 ITM2AO43736 263 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 ITGA2BP08514 1039 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 DARSP14868 501 aaKnown RBP13.12□□□□□ -0.31
LINC00540-203ENST00000631321 ALOX15P16050 662 aaPredicted RBP13.12□□□□□ -0.31
LINC00540-203ENST00000631321 GRK2P25098 689 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 AXLP30530 894 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 CPOXP36551 454 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 MAGEA12P43365 314 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 SLC1A6P48664 564 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 ALDH18A1P54886 795 aaKnown RBP13.12□□□□□ -0.31
LINC00540-203ENST00000631321 SESN2P58004 480 aaPredicted RBP13.12□□□□□ -0.31
LINC00540-203ENST00000631321 SESN3P58005 492 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 ACTR3P61158 418 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 RPL10AP62906 217 aaKnown RBP13.12□□□□□ -0.31
LINC00540-203ENST00000631321 ARHGAP8P85298 464 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 DPYSQ14117 519 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 LBRQ14739 615 aaKnown RBP13.12□□□□□ -0.31
LINC00540-203ENST00000631321 PCLAFQ15004 111 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 DGKDQ16760 1214 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 MYLK4Q86YV6 388 aaPredicted RBP13.12□□□□□ -0.31
LINC00540-203ENST00000631321 APLFQ8IW19 511 aaPredicted RBP13.12□□□□□ -0.31
LINC00540-203ENST00000631321 ULK2Q8IYT8 1036 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 PPP1R14CQ8TAE6 165 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 SPDL1Q96EA4 605 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 NPY6RQ99463 290 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 HNRNPABQ99729 332 aaKnown RBP13.12□□□□□ -0.31
LINC00540-203ENST00000631321 FAM96AQ9H5X1 160 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 CDHR5Q9HBB8 845 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 SETD4Q9NVD3 440 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 DNAJB4Q9UDY4 337 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 DNAJC16Q9Y2G8 782 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 PSAT1Q9Y617 370 aa13.12□□□□□ -0.31
LINC00540-203ENST00000631321 PPP1R12AO14974 1030 aaPredicted RBP13.11□□□□□ -0.31
LINC00540-203ENST00000631321 STRNO43815 780 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 WARSP23381 471 aaKnown RBP13.11□□□□□ -0.31
LINC00540-203ENST00000631321 PSMB4P28070 264 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 NOS2P35228 1153 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 KDSRQ06136 332 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 KLC1Q07866 573 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 RCN2Q14257 317 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 ZRSR2Q15696 482 aaKnown RBP13.11□□□□□ -0.31
LINC00540-203ENST00000631321 SPANXN3Q5MJ09 141 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 ZNF618Q5T7W0 954 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 PIGZQ86VD9 579 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 ZNF567Q8N184 647 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 APPL2Q8NEU8 664 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 OR6Y1Q8NGX8 325 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 TNIP3Q96KP6 325 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 RILPQ96NA2 401 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 SLC2A13Q96QE2 648 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 DUSP16Q9BY84 665 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 GPAMQ9HCL2 828 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 DNAJC28Q9NX36 388 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 SYBUQ9NX95 663 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 ADAM28Q9UKQ2 775 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 DCLK1O15075 740 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 XPOTO43592 962 aaKnown RBP13.11□□□□□ -0.31
LINC00540-203ENST00000631321 LYPLA1O75608 230 aaPredicted RBP13.11□□□□□ -0.31
LINC00540-203ENST00000631321 CIB2O75838 187 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 KLHL2O95198 593 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 LINGO3P0C6S8 592 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 SKIP12755 728 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 MYL4P12829 197 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 GP5P40197 560 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 TAF6P49848 677 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 IRX4P78413 519 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 GRTP1Q5TC63 336 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 KCTD13Q8WZ19 329 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 PANX3Q96QZ0 392 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 SORT1Q99523 831 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 CPNE1Q99829 537 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 PRDM12Q9H4Q4 367 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 ANGPTL2Q9UKU9 493 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 UTRNP46939 3433 aa13.11□□□□□ -0.31
LINC00540-203ENST00000631321 SMIM35A0A1B0GVV1 85 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 MBLAC1A4D2B0 266 aaPredicted RBP13.1□□□□□ -0.31
LINC00540-203ENST00000631321 F5H423 210 aaPredicted RBP13.1□□□□□ -0.31
LINC00540-203ENST00000631321 POLBP06746 335 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 HARS2P49590 506 aaKnown RBP13.1□□□□□ -0.31
LINC00540-203ENST00000631321 PITX1P78337 314 aaPredicted RBP13.1□□□□□ -0.31
LINC00540-203ENST00000631321 TMEM62Q0P6H9 643 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 ADIGQ0VDE8 80 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 UBAP2LQ14157 1087 aaKnown RBP13.1□□□□□ -0.31
LINC00540-203ENST00000631321 SV2CQ496J9 727 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 MDH1BQ5I0G3 518 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 LDLRAD1Q5T700 205 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 RIPOR1Q6ZS17 1223 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms