RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 DEC1Q9P2X7 70 aa19.76■□□□□ 0.75
SQSTM1-216ENST00000626660 NDRG2Q9UN36 371 aaKnown RBP19.76■□□□□ 0.75
SQSTM1-216ENST00000626660 ZDBF2Q9HCK1 2354 aa19.75■□□□□ 0.75
SQSTM1-216ENST00000626660 LRCH4O75427 683 aa19.75■□□□□ 0.75
SQSTM1-216ENST00000626660 MTA2O94776 668 aa19.75■□□□□ 0.75
SQSTM1-216ENST00000626660 PROSCO94903 275 aa19.75■□□□□ 0.75
SQSTM1-216ENST00000626660 PCK1P35558 622 aa19.75■□□□□ 0.75
SQSTM1-216ENST00000626660 OPRD1P41143 372 aa19.75■□□□□ 0.75
SQSTM1-216ENST00000626660 NOP2P46087 812 aaKnown RBP19.75■□□□□ 0.75
SQSTM1-216ENST00000626660 VAV2P52735 878 aa19.75■□□□□ 0.75
SQSTM1-216ENST00000626660 SCAPQ12770 1279 aa19.75■□□□□ 0.75
SQSTM1-216ENST00000626660 GRSF1Q12849 480 aaKnown RBP eCLIP19.75■□□□□ 0.75
SQSTM1-216ENST00000626660 TCEAL1Q15170 157 aa19.75■□□□□ 0.75
SQSTM1-216ENST00000626660 GRAMD4Q6IC98 578 aa19.75■□□□□ 0.75
SQSTM1-216ENST00000626660 NUDT18Q6ZVK8 323 aa19.75■□□□□ 0.75
SQSTM1-216ENST00000626660 ALYREFQ86V81 257 aaKnown RBP19.75■□□□□ 0.75
SQSTM1-216ENST00000626660 SUGP1Q8IWZ8 645 aaKnown RBP19.75■□□□□ 0.75
SQSTM1-216ENST00000626660 ETFBKMTQ8IXQ9 262 aa19.75■□□□□ 0.75
SQSTM1-216ENST00000626660 CCDC185Q8N715 623 aa19.75■□□□□ 0.75
SQSTM1-216ENST00000626660 ZNF557Q8N988 423 aaPredicted RBP19.75■□□□□ 0.75
SQSTM1-216ENST00000626660 PBXIP1Q96AQ6 731 aa19.75■□□□□ 0.75
SQSTM1-216ENST00000626660 CHFRQ96EP1 664 aa19.75■□□□□ 0.75
SQSTM1-216ENST00000626660 PRICKLE1Q96MT3 831 aaPredicted RBP19.75■□□□□ 0.75
SQSTM1-216ENST00000626660 RPRD1AQ96P16 312 aaPredicted RBP19.75■□□□□ 0.75
SQSTM1-216ENST00000626660 PNKPQ96T60 521 aa19.75■□□□□ 0.75
SQSTM1-216ENST00000626660 SLC2A11Q9BYW1 496 aa19.75■□□□□ 0.75
SQSTM1-216ENST00000626660 LTB4R2Q9NPC1 389 aa19.75■□□□□ 0.75
SQSTM1-216ENST00000626660 ANLNQ9NQW6 1124 aa19.75■□□□□ 0.75
SQSTM1-216ENST00000626660 TMPRSS4Q9NRS4 437 aa19.75■□□□□ 0.75
SQSTM1-216ENST00000626660 STIM2Q9P246 746 aa19.75■□□□□ 0.75
SQSTM1-216ENST00000626660 VANGL2Q9ULK5 521 aa19.75■□□□□ 0.75
SQSTM1-216ENST00000626660 KIAA1549LQ6ZVL6 1849 aa19.74■□□□□ 0.75
SQSTM1-216ENST00000626660 A0A0A6YYK5 440 aaPredicted RBP19.74■□□□□ 0.75
SQSTM1-216ENST00000626660 TMEM110-MUSTN1A8MSY1 372 aa19.74■□□□□ 0.75
SQSTM1-216ENST00000626660 I6L893 689 aaPredicted RBP19.74■□□□□ 0.75
SQSTM1-216ENST00000626660 NCAM2O15394 837 aa19.74■□□□□ 0.75
SQSTM1-216ENST00000626660 TULP3O75386 442 aa19.74■□□□□ 0.75
SQSTM1-216ENST00000626660 APODP05090 189 aa19.74■□□□□ 0.75
SQSTM1-216ENST00000626660 HOXD9P28356 352 aaPredicted RBP19.74■□□□□ 0.75
SQSTM1-216ENST00000626660 MIPP30301 263 aa19.74■□□□□ 0.75
SQSTM1-216ENST00000626660 GGCXP38435 758 aa19.74■□□□□ 0.75
SQSTM1-216ENST00000626660 ARHGAP25P42331 645 aa19.74■□□□□ 0.75
SQSTM1-216ENST00000626660 SSR1P43307 286 aaKnown RBP19.74■□□□□ 0.75
SQSTM1-216ENST00000626660 SLC6A11P48066 632 aa19.74■□□□□ 0.75
SQSTM1-216ENST00000626660 GALK1P51570 392 aa19.74■□□□□ 0.75
SQSTM1-216ENST00000626660 RPS24P62847 133 aaKnown RBP19.74■□□□□ 0.75
SQSTM1-216ENST00000626660 FBXL22Q6P050 247 aa19.74■□□□□ 0.75
SQSTM1-216ENST00000626660 C12orf40Q86WS4 652 aa19.74■□□□□ 0.75
SQSTM1-216ENST00000626660 PDLIM2Q96JY6 352 aa19.74■□□□□ 0.75
SQSTM1-216ENST00000626660 DESI2Q9BSY9 194 aa19.74■□□□□ 0.75
SQSTM1-216ENST00000626660 OSBPL6Q9BZF3 934 aa19.74■□□□□ 0.75
SQSTM1-216ENST00000626660 FOXQ1Q9C009 403 aa19.74■□□□□ 0.75
SQSTM1-216ENST00000626660 OSBPL2Q9H1P3 480 aa19.74■□□□□ 0.75
SQSTM1-216ENST00000626660 ARHGEF4Q9NR80 690 aa19.74■□□□□ 0.75
SQSTM1-216ENST00000626660 PCSK1NQ9UHG2 260 aa19.74■□□□□ 0.75
SQSTM1-216ENST00000626660 FZD10Q9ULW2 581 aa19.74■□□□□ 0.75
SQSTM1-216ENST00000626660 REXO2Q9Y3B8 237 aaKnown RBP19.74■□□□□ 0.75
SQSTM1-216ENST00000626660 TRIOO75962 3097 aa19.74■□□□□ 0.75
SQSTM1-216ENST00000626660 FAM170BA6NMN3 283 aa19.73■□□□□ 0.75
SQSTM1-216ENST00000626660 PDGFBP01127 241 aaPredicted RBP19.73■□□□□ 0.75
SQSTM1-216ENST00000626660 DRD1P21728 446 aa19.73■□□□□ 0.75
SQSTM1-216ENST00000626660 DGKGP49619 791 aa19.73■□□□□ 0.75
SQSTM1-216ENST00000626660 SGSHP51688 502 aa19.73■□□□□ 0.75
SQSTM1-216ENST00000626660 KDSRQ06136 332 aa19.73■□□□□ 0.75
SQSTM1-216ENST00000626660 LRRC32Q14392 662 aa19.73■□□□□ 0.75
SQSTM1-216ENST00000626660 MESDQ14696 234 aa19.73■□□□□ 0.75
SQSTM1-216ENST00000626660 HADHQ16836 314 aaKnown RBP19.73■□□□□ 0.75
SQSTM1-216ENST00000626660 TMEM196Q5HYL7 178 aa19.73■□□□□ 0.75
SQSTM1-216ENST00000626660 NAIF1Q69YI7 327 aaPredicted RBP19.73■□□□□ 0.75
SQSTM1-216ENST00000626660 C14orf80Q86SX3 495 aa19.73■□□□□ 0.75
SQSTM1-216ENST00000626660 CFAP52Q8N1V2 620 aa19.73■□□□□ 0.75
SQSTM1-216ENST00000626660 ARFGAP1Q8N6T3 406 aa19.73■□□□□ 0.75
SQSTM1-216ENST00000626660 OR12D3Q9UGF7 316 aa19.73■□□□□ 0.75
SQSTM1-216ENST00000626660 USP18Q9UMW8 372 aa19.73■□□□□ 0.75
SQSTM1-216ENST00000626660 SNX10Q9Y5X0 201 aa19.73■□□□□ 0.75
SQSTM1-216ENST00000626660 A0A1B0GVM2 712 aa19.72■□□□□ 0.75
SQSTM1-216ENST00000626660 TCAF2A6NFQ2 919 aa19.72■□□□□ 0.75
SQSTM1-216ENST00000626660 SHISA7A6NL88 538 aa19.72■□□□□ 0.75
SQSTM1-216ENST00000626660 E9PAM4 449 aa19.72■□□□□ 0.75
SQSTM1-216ENST00000626660 SRGAP2O75044 1071 aa19.72■□□□□ 0.75
SQSTM1-216ENST00000626660 TARSP26639 723 aaKnown RBP19.72■□□□□ 0.75
SQSTM1-216ENST00000626660 MAN1A1P33908 653 aa19.72■□□□□ 0.75
SQSTM1-216ENST00000626660 GRIA2P42262 883 aa19.72■□□□□ 0.75
SQSTM1-216ENST00000626660 HADHBP55084 474 aaKnown RBP19.72■□□□□ 0.75
SQSTM1-216ENST00000626660 NRG1Q02297 640 aaPredicted RBP19.72■□□□□ 0.75
SQSTM1-216ENST00000626660 KIF5AQ12840 1032 aa19.72■□□□□ 0.75
SQSTM1-216ENST00000626660 CDH18Q13634 790 aa19.72■□□□□ 0.75
SQSTM1-216ENST00000626660 DGKKQ5KSL6 1271 aa19.72■□□□□ 0.75
SQSTM1-216ENST00000626660 ERMARDQ5T6L9 678 aa19.72■□□□□ 0.75
SQSTM1-216ENST00000626660 BMP8AQ7Z5Y6 402 aa19.72■□□□□ 0.75
SQSTM1-216ENST00000626660 MFN1Q8IWA4 741 aa19.72■□□□□ 0.75
SQSTM1-216ENST00000626660 CARNMT1Q8N4J0 409 aa19.72■□□□□ 0.75
SQSTM1-216ENST00000626660 PJA1Q8NG27 643 aa19.72■□□□□ 0.75
SQSTM1-216ENST00000626660 MYEOVQ96EZ4 313 aa19.72■□□□□ 0.75
SQSTM1-216ENST00000626660 CALR3Q96L12 384 aaKnown RBP19.72■□□□□ 0.75
SQSTM1-216ENST00000626660 EPAS1Q99814 870 aa19.72■□□□□ 0.75
SQSTM1-216ENST00000626660 FBXO10Q9UK96 956 aa19.72■□□□□ 0.75
SQSTM1-216ENST00000626660 TFR2Q9UP52 801 aa19.72■□□□□ 0.75
SQSTM1-216ENST00000626660 AP4E1Q9UPM8 1137 aa19.72■□□□□ 0.75
SQSTM1-216ENST00000626660 SIT1Q9Y3P8 196 aa19.72■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms