RNA–Protein interactions for RNA: ENST00000622555.1

PTCHD3-202, Transcript of patched domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene PTCHD3, Length 1,720 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3-202ENST00000622555 AMPD1P23109 780 aa18.4■□□□□ 0.54
PTCHD3-202ENST00000622555 LTBRP36941 435 aa18.4■□□□□ 0.54
PTCHD3-202ENST00000622555 HCAR3P49019 387 aa18.4■□□□□ 0.54
PTCHD3-202ENST00000622555 NRG1Q02297 640 aaPredicted RBP18.4■□□□□ 0.54
PTCHD3-202ENST00000622555 AUHQ13825 339 aaKnown RBP18.4■□□□□ 0.54
PTCHD3-202ENST00000622555 COL19A1Q14993 1142 aa18.4■□□□□ 0.54
PTCHD3-202ENST00000622555 ACBD5Q5T8D3 534 aaPredicted RBP18.4■□□□□ 0.54
PTCHD3-202ENST00000622555 RWDD4Q6NW29 188 aaKnown RBP18.4■□□□□ 0.54
PTCHD3-202ENST00000622555 Q7L0L9 218 aa18.4■□□□□ 0.54
PTCHD3-202ENST00000622555 GET4Q7L5D6 327 aaPredicted RBP18.4■□□□□ 0.54
PTCHD3-202ENST00000622555 ZNF572Q7Z3I7 529 aaPredicted RBP18.4■□□□□ 0.54
PTCHD3-202ENST00000622555 C14orf80Q86SX3 495 aa18.4■□□□□ 0.54
PTCHD3-202ENST00000622555 DDX42Q86XP3 938 aaKnown RBP eCLIP18.4■□□□□ 0.54
PTCHD3-202ENST00000622555 PQLC3Q8N755 202 aa18.4■□□□□ 0.54
PTCHD3-202ENST00000622555 SPATA4Q8NEY3 305 aa18.4■□□□□ 0.54
PTCHD3-202ENST00000622555 USP13Q92995 863 aaPredicted RBP18.4■□□□□ 0.54
PTCHD3-202ENST00000622555 AZIN2Q96A70 460 aa18.4■□□□□ 0.54
PTCHD3-202ENST00000622555 TBC1D31Q96DN5 1066 aa18.4■□□□□ 0.54
PTCHD3-202ENST00000622555 ARHGEF4Q9NR80 690 aa18.4■□□□□ 0.54
PTCHD3-202ENST00000622555 TDP1Q9NUW8 608 aa18.4■□□□□ 0.54
PTCHD3-202ENST00000622555 STIM2Q9P246 746 aa18.4■□□□□ 0.54
PTCHD3-202ENST00000622555 AGO1Q9UL18 857 aaKnown RBP18.4■□□□□ 0.54
PTCHD3-202ENST00000622555 VANGL2Q9ULK5 521 aa18.4■□□□□ 0.54
PTCHD3-202ENST00000622555 CCL26Q9Y258 94 aa18.4■□□□□ 0.54
PTCHD3-202ENST00000622555 NR2E1Q9Y466 385 aa18.4■□□□□ 0.54
PTCHD3-202ENST00000622555 SCAMP3O14828 347 aaKnown RBP18.39■□□□□ 0.53
PTCHD3-202ENST00000622555 TACR2P21452 398 aa18.39■□□□□ 0.53
PTCHD3-202ENST00000622555 EPHB2P29323 1055 aa18.39■□□□□ 0.53
PTCHD3-202ENST00000622555 C2orf54Q08AI8 447 aa18.39■□□□□ 0.53
PTCHD3-202ENST00000622555 DPYSQ14117 519 aa18.39■□□□□ 0.53
PTCHD3-202ENST00000622555 MANEALQ5VSG8 457 aa18.39■□□□□ 0.53
PTCHD3-202ENST00000622555 POTEHQ6S545 545 aa18.39■□□□□ 0.53
PTCHD3-202ENST00000622555 LRRC31Q6UY01 552 aa18.39■□□□□ 0.53
PTCHD3-202ENST00000622555 NPAS3Q8IXF0 933 aa18.39■□□□□ 0.53
PTCHD3-202ENST00000622555 ZDHHC14Q8IZN3 488 aa18.39■□□□□ 0.53
PTCHD3-202ENST00000622555 ZSCAN18Q8TBC5 510 aaPredicted RBP18.39■□□□□ 0.53
PTCHD3-202ENST00000622555 SH3RF2Q8TEC5 729 aa18.39■□□□□ 0.53
PTCHD3-202ENST00000622555 MYLIPQ8WY64 445 aa18.39■□□□□ 0.53
PTCHD3-202ENST00000622555 RIPOR3Q96MK2 946 aa18.39■□□□□ 0.53
PTCHD3-202ENST00000622555 PRMT1Q99873 361 aaKnown RBP18.39■□□□□ 0.53
PTCHD3-202ENST00000622555 EFCAB8A8MWE9 144 aa18.38■□□□□ 0.53
PTCHD3-202ENST00000622555 PRAMEF12O95522 483 aa18.38■□□□□ 0.53
PTCHD3-202ENST00000622555 LATS1O95835 1130 aa18.38■□□□□ 0.53
PTCHD3-202ENST00000622555 HTR7P34969 479 aa18.38■□□□□ 0.53
PTCHD3-202ENST00000622555 SIX1Q15475 284 aaPredicted RBP18.38■□□□□ 0.53
PTCHD3-202ENST00000622555 FAM133BQ5BKY9 247 aaKnown RBP18.38■□□□□ 0.53
PTCHD3-202ENST00000622555 SLC9A4Q6AI14 798 aa18.38■□□□□ 0.53
PTCHD3-202ENST00000622555 ARID3BQ8IVW6 561 aaPredicted RBP18.38■□□□□ 0.53
PTCHD3-202ENST00000622555 FGF13Q92913 245 aa18.38■□□□□ 0.53
PTCHD3-202ENST00000622555 HAUS1Q96CS2 278 aa18.38■□□□□ 0.53
PTCHD3-202ENST00000622555 RBM12Q9NTZ6 932 aaKnown RBP18.38■□□□□ 0.53
PTCHD3-202ENST00000622555 DOCK8Q8NF50 2099 aa18.38■□□□□ 0.53
PTCHD3-202ENST00000622555 F5H5T6 163 aa18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 GREM1O60565 184 aa18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 ZFXP17010 805 aaPredicted RBP18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 ERCC2P18074 760 aa18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 SLC6A4P31645 630 aa18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 ADGRF1Q5T601 910 aa18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 FBXL22Q6P050 247 aa18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 RFWD3Q6PCD5 774 aa18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 C1orf228Q6PIY5 440 aa18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 Q6ZNB5 142 aa18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 HTR3DQ70Z44 454 aa18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 LGI2Q8N0V4 545 aa18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 PLD5Q8N7P1 536 aa18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 C1orf54Q8WWF1 131 aa18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 MSLNLQ96KJ4 702 aa18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 RPGRIP1Q96KN7 1286 aa18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 CDX2Q99626 313 aaPredicted RBP18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 DDX50Q9BQ39 737 aaKnown RBP18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 ETNK2Q9NVF9 386 aa18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 NEU3Q9UQ49 428 aa18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 ZNF510Q9Y2H8 683 aa18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 R3HDM2Q9Y2K5 976 aaKnown RBP18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 REV3LO60673 3130 aa18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 APOC4-APOC2K7ER74 178 aa18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 APOC2P02655 101 aa18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 HOXC13P31276 330 aa18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 MTHFRP42898 656 aa18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 GPR153Q6NV75 609 aa18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 ZNF683Q8IZ20 524 aa18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 PRELID2Q8N945 189 aa18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 ATG4AQ8WYN0 398 aa18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 RPRD1AQ96P16 312 aaPredicted RBP18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 FAM118BQ9BPY3 351 aa18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 CATSPERBQ9H7T0 1116 aa18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 PRDM16Q9HAZ2 1276 aa18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 SAE1Q9UBE0 346 aaPredicted RBP18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 MFHAS1Q9Y4C4 1052 aa18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 DENND4AQ7Z401 1863 aa18.37■□□□□ 0.53
PTCHD3-202ENST00000622555 NUP205Q92621 2012 aa18.36■□□□□ 0.53
PTCHD3-202ENST00000622555 CCDC188H7C350 402 aa18.36■□□□□ 0.53
PTCHD3-202ENST00000622555 TRDMT1O14717 391 aaKnown RBP18.36■□□□□ 0.53
PTCHD3-202ENST00000622555 DCLK1O15075 740 aa18.36■□□□□ 0.53
PTCHD3-202ENST00000622555 FGF10O15520 208 aaPredicted RBP18.36■□□□□ 0.53
PTCHD3-202ENST00000622555 TGM2P21980 687 aa18.36■□□□□ 0.53
PTCHD3-202ENST00000622555 ELF2Q15723 593 aa18.36■□□□□ 0.53
PTCHD3-202ENST00000622555 CCDC85BQ15834 202 aaPredicted RBP18.36■□□□□ 0.53
PTCHD3-202ENST00000622555 ERCC6LQ2NKX8 1250 aa18.36■□□□□ 0.53
PTCHD3-202ENST00000622555 ARTNQ5T4W7 220 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms