RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 MYLK2Q9H1R3 596 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 MANSC1Q9H8J5 431 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 CD248Q9HCU0 757 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 PCMTD2Q9NV79 361 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 KLHL8Q9P2G9 620 aaPredicted RBP10.93□□□□□ -0.66
CUX1-221ENST00000622516 OR12D3Q9UGF7 316 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 FETUBQ9UGM5 382 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 SFMBT1Q9UHJ3 866 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 CHKBQ9Y259 395 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 STK38LQ9Y2H1 464 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 A0A0G2JND7 137 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 COPEO14579 308 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 MSI1O43347 362 aaKnown RBP10.93□□□□□ -0.66
CUX1-221ENST00000622516 MAGEA3P43357 314 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 INHBEP58166 350 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 SEMA5AQ13591 1074 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 RASA2Q15283 850 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 TTC39BQ5VTQ0 682 aaPredicted RBP10.93□□□□□ -0.66
CUX1-221ENST00000622516 RWDD4Q6NW29 188 aaKnown RBP10.93□□□□□ -0.66
CUX1-221ENST00000622516 BNIPLQ7Z465 357 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 VSIG1Q86XK7 387 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 TMEM86AQ8N2M4 240 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 ARMC2Q8NEN0 867 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 OR52K1Q8NGK4 314 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 GSDMBQ8TAX9 411 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 USP33Q8TEY7 942 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 SMARCD1Q96GM5 515 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 TMEM237Q96Q45 408 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 IQCGQ9H095 443 aaKnown RBP10.93□□□□□ -0.66
CUX1-221ENST00000622516 TRPV6Q9H1D0 765 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 PPCSQ9HAB8 311 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 CHST12Q9NRB3 414 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 CDH9Q9ULB4 789 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 PSAT1Q9Y617 370 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 A0A0U1RQF3 1178 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 TMEM88BA6NKF7 163 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 DCLK1O15075 740 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 AOC2O75106 756 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 LRIG2O94898 1065 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 TARSP26639 723 aaKnown RBP10.92□□□□□ -0.66
CUX1-221ENST00000622516 MAGEA6P43360 314 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 ABCG1P45844 678 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 SREBF2Q12772 1141 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 PDK1Q15118 436 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 ZNF449Q6P9G9 518 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 TAC4Q86UU9 113 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 MCUQ8NE86 351 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 GPR152Q8TDT2 470 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 STAMBPL1Q96FJ0 436 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 RXFP1Q9HBX9 757 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 CNGB3Q9NQW8 809 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 SYBUQ9NX95 663 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 FBXW11Q9UKB1 542 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 STARD13Q9Y3M8 1113 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 A8MUI8 341 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 ZBTB24O43167 697 aaPredicted RBP10.92□□□□□ -0.66
CUX1-221ENST00000622516 KPNA6O60684 536 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 RFPL1O75677 317 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 KRT37O76014 449 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 MYCP01106 439 aaPredicted RBP10.92□□□□□ -0.66
CUX1-221ENST00000622516 SNRPAP09012 282 aaKnown RBP10.92□□□□□ -0.66
CUX1-221ENST00000622516 ERVK-10P10266 1014 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 ODC1P11926 461 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 TPH1P17752 444 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 PRKCHP24723 683 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 ETV4P43268 484 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 SLC18A1P54219 525 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 ITGA7Q13683 1181 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 PRKD1Q15139 912 aaPredicted RBP10.92□□□□□ -0.66
CUX1-221ENST00000622516 GALNTL6Q49A17 601 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 OVOS1Q6IE37 1185 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 APOPT1Q96IL0 206 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 TSPAN18Q96SJ8 248 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 CDH23Q9H251 3354 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 ZNF487B1APH4 448 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 GOLGA8TH3BQL2 631 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 TPSB2P20231 275 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 PCSK1P29120 753 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 MNAT1P51948 309 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 BNIP1Q12981 228 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 TPSAB1Q15661 275 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 RAB41Q5JT25 222 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 C16orf46Q6P387 395 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 ARHGAP36Q6ZRI8 547 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 SCN4BQ8IWT1 228 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 NDUFAF2Q8N183 169 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 ARNTL2Q8WYA1 636 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 KLHL29Q96CT2 875 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 B3GALT6Q96L58 329 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 HAO1Q9UJM8 370 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 PRG3Q9Y2Y8 225 aaPredicted RBP10.92□□□□□ -0.66
CUX1-221ENST00000622516 PCDHA11Q9Y5I1 949 aa10.92□□□□□ -0.66
CUX1-221ENST00000622516 SDR42E2A6NKP2 422 aa10.91□□□□□ -0.66
CUX1-221ENST00000622516 TM9SF1O15321 606 aa10.91□□□□□ -0.66
CUX1-221ENST00000622516 SPAG6O75602 509 aa10.91□□□□□ -0.66
CUX1-221ENST00000622516 DNAJC8O75937 253 aaPredicted RBP10.91□□□□□ -0.66
CUX1-221ENST00000622516 CBX6O95503 412 aa10.91□□□□□ -0.66
CUX1-221ENST00000622516 MOCS2O96007 188 aaPredicted RBP10.91□□□□□ -0.66
CUX1-221ENST00000622516 KITP10721 976 aa10.91□□□□□ -0.66
CUX1-221ENST00000622516 PTPN3P26045 913 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms