RNA–Protein interactions for RNA: ENST00000620393.4

CPNE3-209, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 680 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-209ENST00000620393 CALN1Q9BXU9 219 aa8.3□□□□□ -1.08
CPNE3-209ENST00000620393 SIK2Q9H0K1 926 aa8.3□□□□□ -1.08
CPNE3-209ENST00000620393 TDP1Q9NUW8 608 aa8.3□□□□□ -1.08
CPNE3-209ENST00000620393 SMPD4Q9NXE4 827 aa8.3□□□□□ -1.08
CPNE3-209ENST00000620393 GDE1Q9NZC3 331 aa8.3□□□□□ -1.08
CPNE3-209ENST00000620393 CWC15Q9P013 229 aaKnown RBP8.3□□□□□ -1.08
CPNE3-209ENST00000620393 STIM2Q9P246 746 aa8.3□□□□□ -1.08
CPNE3-209ENST00000620393 XPO7Q9UIA9 1087 aaKnown RBP8.3□□□□□ -1.08
CPNE3-209ENST00000620393 STOML2Q9UJZ1 356 aa8.3□□□□□ -1.08
CPNE3-209ENST00000620393 ZNF510Q9Y2H8 683 aa8.3□□□□□ -1.08
CPNE3-209ENST00000620393 SNX10Q9Y5X0 201 aa8.3□□□□□ -1.08
CPNE3-209ENST00000620393 HS3ST4Q9Y661 456 aa8.3□□□□□ -1.08
CPNE3-209ENST00000620393 TRIOBPQ9H2D6 2365 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP8.29□□□□□ -1.08
CPNE3-209ENST00000620393 E2F8A0AVK6 867 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 DRGXA6NNA5 263 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 PGRMC1O00264 195 aaKnown RBP8.29□□□□□ -1.08
CPNE3-209ENST00000620393 LEFTY2O00292 366 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 EEF2KO00418 725 aaKnown RBP8.29□□□□□ -1.08
CPNE3-209ENST00000620393 CREB3O43889 395 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 CST8O60676 142 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 TBX10O75333 385 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 LRIG2O94898 1065 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 LATS1O95835 1130 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 FGGP02679 453 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 TCF3P15923 654 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 ZFXP17010 805 aaPredicted RBP8.29□□□□□ -1.08
CPNE3-209ENST00000620393 GOT1P17174 413 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 AMPD1P23109 780 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 CORO1AP31146 461 aaKnown RBP8.29□□□□□ -1.08
CPNE3-209ENST00000620393 MTHFRP42898 656 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 ADCY2Q08462 1091 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 KLF1Q13351 362 aaPredicted RBP8.29□□□□□ -1.08
CPNE3-209ENST00000620393 C5orf22Q49AR2 442 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 MS4A13Q5J8X5 152 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 C6orf132Q5T0Z8 1188 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 ARTNQ5T4W7 220 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 ADGRF1Q5T601 910 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 PIK3R6Q5UE93 754 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 MANEALQ5VSG8 457 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 NADSYN1Q6IA69 706 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 LRRC31Q6UY01 552 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 Q6ZNB5 142 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 EP400NLQ6ZTU2 488 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 RFX8Q6ZV50 586 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 ZNF572Q7Z3I7 529 aaPredicted RBP8.29□□□□□ -1.08
CPNE3-209ENST00000620393 DDX42Q86XP3 938 aaKnown RBP eCLIP8.29□□□□□ -1.08
CPNE3-209ENST00000620393 DENND1CQ8IV53 801 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 ZNF683Q8IZ20 524 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 ZDHHC14Q8IZN3 488 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 MICALL1Q8N3F8 863 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 PQLC3Q8N755 202 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 KIAA1958Q8N8K9 716 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 PCDH19Q8TAB3 1148 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 SH3RF2Q8TEC5 729 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 MYLIPQ8WY64 445 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 ING5Q8WYH8 240 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 FGF13Q92913 245 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 USP13Q92995 863 aaPredicted RBP8.29□□□□□ -1.08
CPNE3-209ENST00000620393 DDX50Q9BQ39 737 aaKnown RBP8.29□□□□□ -1.08
CPNE3-209ENST00000620393 HERPUD2Q9BSE4 406 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 SLITRK6Q9H5Y7 841 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 CFAP97Q9P2B7 532 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 PPARGC1AQ9UBK2 798 aaKnown RBP8.29□□□□□ -1.08
CPNE3-209ENST00000620393 LSM7Q9UK45 103 aaKnown RBP8.29□□□□□ -1.08
CPNE3-209ENST00000620393 AGO1Q9UL18 857 aaKnown RBP8.29□□□□□ -1.08
CPNE3-209ENST00000620393 SH3BP1Q9Y3L3 701 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 COL4A4P53420 1690 aaPredicted RBP8.29□□□□□ -1.08
CPNE3-209ENST00000620393 GBF1Q92538 1859 aa8.29□□□□□ -1.08
CPNE3-209ENST00000620393 MYO9BQ13459 2157 aa8.28□□□□□ -1.08
CPNE3-209ENST00000620393 IGLV3-10A0A075B6K4 115 aa8.28□□□□□ -1.08
CPNE3-209ENST00000620393 GOLGA6L7A0A1B0GV03 622 aa8.28□□□□□ -1.08
CPNE3-209ENST00000620393 TCRBV7S2A1N4TA0A589 114 aa8.28□□□□□ -1.08
CPNE3-209ENST00000620393 E9PAM4 449 aa8.28□□□□□ -1.08
CPNE3-209ENST00000620393 KRIT1O00522 736 aa8.28□□□□□ -1.08
CPNE3-209ENST00000620393 DAPK3O43293 454 aa8.28□□□□□ -1.08
CPNE3-209ENST00000620393 IRF1P10914 325 aa8.28□□□□□ -1.08
CPNE3-209ENST00000620393 ERCC2P18074 760 aa8.28□□□□□ -1.08
CPNE3-209ENST00000620393 COL9A1P20849 921 aa8.28□□□□□ -1.08
CPNE3-209ENST00000620393 TACR2P21452 398 aa8.28□□□□□ -1.08
CPNE3-209ENST00000620393 EPHB2P29323 1055 aa8.28□□□□□ -1.08
CPNE3-209ENST00000620393 HOXC13P31276 330 aa8.28□□□□□ -1.08
CPNE3-209ENST00000620393 TPI1P60174 286 aa8.28□□□□□ -1.08
CPNE3-209ENST00000620393 CKAP4Q07065 602 aaKnown RBP8.28□□□□□ -1.08
CPNE3-209ENST00000620393 DPYSQ14117 519 aa8.28□□□□□ -1.08
CPNE3-209ENST00000620393 SIX1Q15475 284 aaPredicted RBP8.28□□□□□ -1.08
CPNE3-209ENST00000620393 FAM133BQ5BKY9 247 aaKnown RBP8.28□□□□□ -1.08
CPNE3-209ENST00000620393 FAM78AQ5JUQ0 283 aa8.28□□□□□ -1.08
CPNE3-209ENST00000620393 KAZNQ674X7 775 aa8.28□□□□□ -1.08
CPNE3-209ENST00000620393 RAP1GAP2Q684P5 730 aa8.28□□□□□ -1.08
CPNE3-209ENST00000620393 SLC9A4Q6AI14 798 aa8.28□□□□□ -1.08
CPNE3-209ENST00000620393 FBXL22Q6P050 247 aa8.28□□□□□ -1.08
CPNE3-209ENST00000620393 BBS12Q6ZW61 710 aa8.28□□□□□ -1.08
CPNE3-209ENST00000620393 Q7L0L9 218 aa8.28□□□□□ -1.08
CPNE3-209ENST00000620393 RFX6Q8HWS3 928 aa8.28□□□□□ -1.08
CPNE3-209ENST00000620393 NPAS3Q8IXF0 933 aa8.28□□□□□ -1.08
CPNE3-209ENST00000620393 DEFB123Q8N688 67 aa8.28□□□□□ -1.08
CPNE3-209ENST00000620393 CELF5Q8N6W0 485 aaKnown RBP8.28□□□□□ -1.08
CPNE3-209ENST00000620393 PLD5Q8N7P1 536 aa8.28□□□□□ -1.08
CPNE3-209ENST00000620393 CEP112Q8N8E3 955 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms