RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 PCDHB4Q9Y5E5 795 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 CDY2AQ9Y6F7 541 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 CDY1Q9Y6F8 540 aa11.11□□□□□ -0.63
UPF3A-212ENST00000619079 SOBPA7XYQ1 873 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 DCXO43602 365 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 FGF3P11487 239 aaPredicted RBP11.1□□□□□ -0.63
UPF3A-212ENST00000619079 ACO1P21399 889 aaKnown RBP11.1□□□□□ -0.63
UPF3A-212ENST00000619079 OSBPP22059 807 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 TBXAS1P24557 533 aaPredicted RBP11.1□□□□□ -0.63
UPF3A-212ENST00000619079 TTKP33981 857 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 C21orf59P57076 290 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 YWHAZP63104 245 aaKnown RBP11.1□□□□□ -0.63
UPF3A-212ENST00000619079 ROR1Q01973 937 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 KLF10Q13118 480 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 CUL2Q13617 745 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 BMPR2Q13873 1038 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 PSMD6Q15008 389 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 ACAP1Q15027 740 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 ZBED5Q49AG3 693 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 SLC30A10Q6XR72 485 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 MIER3Q7Z3K6 550 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 GPD1LQ8N335 351 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 GSDMBQ8TAX9 411 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 PDCD6IPQ8WUM4 868 aaKnown RBP11.1□□□□□ -0.63
UPF3A-212ENST00000619079 POMGNT1Q8WZA1 660 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 CASP10Q92851 521 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 EME1Q96AY2 570 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 FAF2Q96CS3 445 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 THAP11Q96EK4 314 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 ZNF597Q96LX8 424 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 BEGAINQ9BUH8 593 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 CLK4Q9HAZ1 481 aaKnown RBP11.1□□□□□ -0.63
UPF3A-212ENST00000619079 POPDC2Q9HBU9 364 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 EPS15L1Q9UBC2 864 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 SAE1Q9UBE0 346 aaPredicted RBP11.1□□□□□ -0.63
UPF3A-212ENST00000619079 SLC9A2Q9UBY0 812 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 TMEM98Q9Y2Y6 226 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 AP4S1Q9Y587 144 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 GOLGA8TH3BQL2 631 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 PDHXO00330 501 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 XPO1O14980 1071 aaKnown RBP11.1□□□□□ -0.63
UPF3A-212ENST00000619079 SLC22A2O15244 555 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 LYPLA1O75608 230 aaPredicted RBP11.1□□□□□ -0.63
UPF3A-212ENST00000619079 NUDT2P50583 147 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 PDK1Q15118 436 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 FAXCQ5TGI0 409 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 C16orf46Q6P387 395 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 TMEM270Q6UE05 265 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 MAVSQ7Z434 540 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 RSPH3Q86UC2 560 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 CARM1Q86X55 608 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 ZNF420Q8TAQ5 688 aaPredicted RBP11.1□□□□□ -0.63
UPF3A-212ENST00000619079 CHPT1Q8WUD6 406 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 ACSF2Q96CM8 615 aaPredicted RBP11.1□□□□□ -0.63
UPF3A-212ENST00000619079 ISOC1Q96CN7 298 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 AGAP3Q96P47 875 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 LIN28AQ9H9Z2 209 aaKnown RBP11.1□□□□□ -0.63
UPF3A-212ENST00000619079 SCHIP1Q9P0W5 487 aaPredicted RBP11.1□□□□□ -0.63
UPF3A-212ENST00000619079 PAK5Q9P286 719 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 PTBP2Q9UKA9 531 aaKnown RBP11.1□□□□□ -0.63
UPF3A-212ENST00000619079 SYNPO2Q9UMS6 1093 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 CNTN6Q9UQ52 1028 aa11.1□□□□□ -0.63
UPF3A-212ENST00000619079 A0A087WXM4 84 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 TCRBV5S1A1TA0A578 114 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 CXorf49A8MYA2 514 aaPredicted RBP11.09□□□□□ -0.63
UPF3A-212ENST00000619079 BCAS2O75934 225 aaPredicted RBP11.09□□□□□ -0.63
UPF3A-212ENST00000619079 LYPLA2O95372 231 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 COL6A2P12110 1019 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 GARTP22102 1010 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 CDH3P22223 829 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 HARS2P49590 506 aaKnown RBP11.09□□□□□ -0.63
UPF3A-212ENST00000619079 SLC5A3P53794 718 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 KCTD21Q4G0X4 260 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 PIGGQ5H8A4 983 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 TXNRD3NBQ6F5E7 133 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 OLFML1Q6UWY5 402 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 IFNL1Q8IU54 200 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 ADGRF2Q8IZF7 708 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 PHTF2Q8N3S3 785 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 TMIGD2Q96BF3 282 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 PLEKHA8Q96JA3 519 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 C12orf42Q96LP6 360 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 PTPN18Q99952 460 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 PKP2Q99959 881 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 GPATCH1Q9BRR8 931 aaKnown RBP11.09□□□□□ -0.63
UPF3A-212ENST00000619079 ZNF518BQ9C0D4 1074 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 PAIP1Q9H074 479 aaKnown RBP11.09□□□□□ -0.63
UPF3A-212ENST00000619079 CAAP1Q9H8G2 361 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 C10orf88Q9H8K7 445 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 SUN2Q9UH99 717 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 DCDC2Q9UHG0 476 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 GNPTGQ9UJJ9 305 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 TRIM17Q9Y577 477 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 GPC6Q9Y625 555 aaPredicted RBP11.09□□□□□ -0.63
UPF3A-212ENST00000619079 FAM159BA6NKW6 160 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 STAM2O75886 525 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 HLA-DRAP01903 254 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 EIF2S1P05198 315 aaKnown RBP11.09□□□□□ -0.63
UPF3A-212ENST00000619079 CFHP08603 1231 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 ZNF26P17031 533 aaPredicted RBP11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms