RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 RNF43Q68DV7 783 aa20.39■□□□□ 0.85
UPF3A-211ENST00000618700 PSTKQ8IV42 348 aaKnown RBP20.39■□□□□ 0.85
UPF3A-211ENST00000618700 UBALD2Q8IYN6 164 aa20.39■□□□□ 0.85
UPF3A-211ENST00000618700 ZNF683Q8IZ20 524 aa20.39■□□□□ 0.85
UPF3A-211ENST00000618700 LRRC57Q8N9N7 239 aa20.39■□□□□ 0.85
UPF3A-211ENST00000618700 SNRNP25Q9BV90 132 aaKnown RBP20.39■□□□□ 0.85
UPF3A-211ENST00000618700 OSBPL2Q9H1P3 480 aa20.39■□□□□ 0.85
UPF3A-211ENST00000618700 SNX10Q9Y5X0 201 aa20.39■□□□□ 0.85
UPF3A-211ENST00000618700 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.39■□□□□ 0.85
UPF3A-211ENST00000618700 GRID2IPA4D2P6 1211 aa20.38■□□□□ 0.85
UPF3A-211ENST00000618700 TRDMT1O14717 391 aaKnown RBP20.38■□□□□ 0.85
UPF3A-211ENST00000618700 ADH5P11766 374 aa20.38■□□□□ 0.85
UPF3A-211ENST00000618700 SGSHP51688 502 aa20.38■□□□□ 0.85
UPF3A-211ENST00000618700 AUHQ13825 339 aaKnown RBP20.38■□□□□ 0.85
UPF3A-211ENST00000618700 EFHC2Q5JST6 749 aa20.38■□□□□ 0.85
UPF3A-211ENST00000618700 MANEALQ5VSG8 457 aa20.38■□□□□ 0.85
UPF3A-211ENST00000618700 FYB2Q5VWT5 728 aa20.38■□□□□ 0.85
UPF3A-211ENST00000618700 TXNRD3NBQ6F5E7 133 aa20.38■□□□□ 0.85
UPF3A-211ENST00000618700 FBXL22Q6P050 247 aa20.38■□□□□ 0.85
UPF3A-211ENST00000618700 TMEM92Q6UXU6 159 aa20.38■□□□□ 0.85
UPF3A-211ENST00000618700 TPGS1Q6ZTW0 290 aa20.38■□□□□ 0.85
UPF3A-211ENST00000618700 RNF10Q8N5U6 811 aaKnown RBP20.38■□□□□ 0.85
UPF3A-211ENST00000618700 CSGALNACT1Q8TDX6 532 aa20.38■□□□□ 0.85
UPF3A-211ENST00000618700 TEKT4Q8WW24 435 aa20.38■□□□□ 0.85
UPF3A-211ENST00000618700 CHFRQ96EP1 664 aa20.38■□□□□ 0.85
UPF3A-211ENST00000618700 SIK2Q9H0K1 926 aa20.38■□□□□ 0.85
UPF3A-211ENST00000618700 GOLPH3Q9H4A6 298 aa20.38■□□□□ 0.85
UPF3A-211ENST00000618700 AP4E1Q9UPM8 1137 aa20.38■□□□□ 0.85
UPF3A-211ENST00000618700 NEU3Q9UQ49 428 aa20.38■□□□□ 0.85
UPF3A-211ENST00000618700 TRIOO75962 3097 aa20.38■□□□□ 0.85
UPF3A-211ENST00000618700 IGLV3-10A0A075B6K4 115 aa20.37■□□□□ 0.85
UPF3A-211ENST00000618700 F5H5T6 163 aa20.37■□□□□ 0.85
UPF3A-211ENST00000618700 COMTP21964 271 aa20.37■□□□□ 0.85
UPF3A-211ENST00000618700 TAS2R40P59535 323 aa20.37■□□□□ 0.85
UPF3A-211ENST00000618700 SEMA3BQ13214 749 aa20.37■□□□□ 0.85
UPF3A-211ENST00000618700 IFI16Q16666 785 aaKnown RBP20.37■□□□□ 0.85
UPF3A-211ENST00000618700 C5orf22Q49AR2 442 aa20.37■□□□□ 0.85
UPF3A-211ENST00000618700 BOLA3Q53S33 107 aa20.37■□□□□ 0.85
UPF3A-211ENST00000618700 ERMARDQ5T6L9 678 aa20.37■□□□□ 0.85
UPF3A-211ENST00000618700 C14orf80Q86SX3 495 aa20.37■□□□□ 0.85
UPF3A-211ENST00000618700 LGI2Q8N0V4 545 aa20.37■□□□□ 0.85
UPF3A-211ENST00000618700 MAGEB5Q9BZ81 275 aa20.37■□□□□ 0.85
UPF3A-211ENST00000618700 GUCA1BQ9UMX6 200 aa20.37■□□□□ 0.85
UPF3A-211ENST00000618700 ALG6Q9Y672 507 aa20.37■□□□□ 0.85
UPF3A-211ENST00000618700 CAPN6Q9Y6Q1 641 aa20.37■□□□□ 0.85
UPF3A-211ENST00000618700 FAM72CH0Y354 149 aa20.36■□□□□ 0.85
UPF3A-211ENST00000618700 TSPAN3O60637 253 aa20.36■□□□□ 0.85
UPF3A-211ENST00000618700 MOCS3O95396 460 aa20.36■□□□□ 0.85
UPF3A-211ENST00000618700 HOXD9P28356 352 aaPredicted RBP20.36■□□□□ 0.85
UPF3A-211ENST00000618700 GJA4P35212 333 aa20.36■□□□□ 0.85
UPF3A-211ENST00000618700 NAP1L1P55209 391 aaKnown RBP20.36■□□□□ 0.85
UPF3A-211ENST00000618700 GAD2Q05329 585 aa20.36■□□□□ 0.85
UPF3A-211ENST00000618700 NR1H3Q13133 447 aa20.36■□□□□ 0.85
UPF3A-211ENST00000618700 CA9Q16790 459 aa20.36■□□□□ 0.85
UPF3A-211ENST00000618700 HADHQ16836 314 aaKnown RBP20.36■□□□□ 0.85
UPF3A-211ENST00000618700 SMTNL2Q2TAL5 461 aa20.36■□□□□ 0.85
UPF3A-211ENST00000618700 MPPE1Q53F39 396 aa20.36■□□□□ 0.85
UPF3A-211ENST00000618700 MPP7Q5T2T1 576 aa20.36■□□□□ 0.85
UPF3A-211ENST00000618700 FAM72AQ5TYM5 149 aa20.36■□□□□ 0.85
UPF3A-211ENST00000618700 LRRC38Q5VT99 294 aa20.36■□□□□ 0.85
UPF3A-211ENST00000618700 FAM72DQ6L9T8 149 aa20.36■□□□□ 0.85
UPF3A-211ENST00000618700 POLNQ7Z5Q5 900 aa20.36■□□□□ 0.85
UPF3A-211ENST00000618700 DAAM2Q86T65 1068 aa20.36■□□□□ 0.85
UPF3A-211ENST00000618700 FAM72BQ86X60 149 aa20.36■□□□□ 0.85
UPF3A-211ENST00000618700 ETFBKMTQ8IXQ9 262 aa20.36■□□□□ 0.85
UPF3A-211ENST00000618700 PYROXD2Q8N2H3 581 aa20.36■□□□□ 0.85
UPF3A-211ENST00000618700 HJURPQ8NCD3 748 aaPredicted RBP20.36■□□□□ 0.85
UPF3A-211ENST00000618700 TTC8Q8TAM2 541 aa20.36■□□□□ 0.85
UPF3A-211ENST00000618700 TMA16Q96EY4 203 aaKnown RBP20.36■□□□□ 0.85
UPF3A-211ENST00000618700 BBS2Q9BXC9 721 aa20.36■□□□□ 0.85
UPF3A-211ENST00000618700 LZTFL1Q9NQ48 299 aa20.36■□□□□ 0.85
UPF3A-211ENST00000618700 HEBP1Q9NRV9 189 aa20.36■□□□□ 0.85
UPF3A-211ENST00000618700 GPATCH2LQ9NWQ4 482 aa20.36■□□□□ 0.85
UPF3A-211ENST00000618700 OR12D3Q9UGF7 316 aa20.36■□□□□ 0.85
UPF3A-211ENST00000618700 VANGL2Q9ULK5 521 aa20.36■□□□□ 0.85
UPF3A-211ENST00000618700 HYOU1Q9Y4L1 999 aa20.36■□□□□ 0.85
UPF3A-211ENST00000618700 MYOFQ9NZM1 2061 aa20.35■□□□□ 0.85
UPF3A-211ENST00000618700 E9PAM4 449 aa20.35■□□□□ 0.85
UPF3A-211ENST00000618700 NEDD8-MDP1E9PL57 170 aa20.35■□□□□ 0.85
UPF3A-211ENST00000618700 CACNG3O60359 315 aa20.35■□□□□ 0.85
UPF3A-211ENST00000618700 CYBBP04839 570 aa20.35■□□□□ 0.85
UPF3A-211ENST00000618700 RARAP10276 462 aa20.35■□□□□ 0.85
UPF3A-211ENST00000618700 TYRP14679 529 aa20.35■□□□□ 0.85
UPF3A-211ENST00000618700 GLULP15104 373 aa20.35■□□□□ 0.85
UPF3A-211ENST00000618700 HOXC13P31276 330 aa20.35■□□□□ 0.85
UPF3A-211ENST00000618700 L1CAMP32004 1257 aa20.35■□□□□ 0.85
UPF3A-211ENST00000618700 SSR1P43307 286 aaKnown RBP20.35■□□□□ 0.85
UPF3A-211ENST00000618700 SOX9P48436 509 aa20.35■□□□□ 0.85
UPF3A-211ENST00000618700 RPS24P62847 133 aaKnown RBP20.35■□□□□ 0.85
UPF3A-211ENST00000618700 DPYSL2Q16555 572 aa20.35■□□□□ 0.85
UPF3A-211ENST00000618700 KCNT1Q5JUK3 1230 aa20.35■□□□□ 0.85
UPF3A-211ENST00000618700 RABGAP1LQ5R372 815 aa20.35■□□□□ 0.85
UPF3A-211ENST00000618700 TTC39BQ5VTQ0 682 aaPredicted RBP20.35■□□□□ 0.85
UPF3A-211ENST00000618700 REXO1L1PQ8IX06 675 aa20.35■□□□□ 0.85
UPF3A-211ENST00000618700 CD101Q93033 1021 aa20.35■□□□□ 0.85
UPF3A-211ENST00000618700 IGSF8Q969P0 613 aa20.35■□□□□ 0.85
UPF3A-211ENST00000618700 MSANTD3Q96H12 275 aa20.35■□□□□ 0.85
UPF3A-211ENST00000618700 KCTD15Q96SI1 283 aaPredicted RBP20.35■□□□□ 0.85
UPF3A-211ENST00000618700 C8orf33Q9H7E9 229 aaPredicted RBP20.35■□□□□ 0.85
UPF3A-211ENST00000618700 ZWILCHQ9H900 591 aa20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms