RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 CROTQ9UKG9 612 aa14.32□□□□□ -0.12
CPSF1-212ENST00000616140 NUDT5Q9UKK9 219 aa14.32□□□□□ -0.12
CPSF1-212ENST00000616140 RAG1P15918 1043 aa14.32□□□□□ -0.12
CPSF1-212ENST00000616140 NPY2RP49146 381 aa14.32□□□□□ -0.12
CPSF1-212ENST00000616140 CDK7P50613 346 aa14.32□□□□□ -0.12
CPSF1-212ENST00000616140 TAS2R40P59535 323 aa14.32□□□□□ -0.12
CPSF1-212ENST00000616140 RHOAP61586 193 aa14.32□□□□□ -0.12
CPSF1-212ENST00000616140 BST1Q10588 318 aa14.32□□□□□ -0.12
CPSF1-212ENST00000616140 SPANXN3Q5MJ09 141 aa14.32□□□□□ -0.12
CPSF1-212ENST00000616140 POLNQ7Z5Q5 900 aa14.32□□□□□ -0.12
CPSF1-212ENST00000616140 BBS7Q8IWZ6 715 aa14.32□□□□□ -0.12
CPSF1-212ENST00000616140 PRKD2Q9BZL6 878 aa14.32□□□□□ -0.12
CPSF1-212ENST00000616140 UBXN6Q9BZV1 441 aa14.32□□□□□ -0.12
CPSF1-212ENST00000616140 KCNK4Q9NYG8 393 aa14.32□□□□□ -0.12
CPSF1-212ENST00000616140 MRASO14807 208 aa14.32□□□□□ -0.12
CPSF1-212ENST00000616140 ENTPD5O75356 428 aa14.32□□□□□ -0.12
CPSF1-212ENST00000616140 TOMM70O94826 608 aa14.32□□□□□ -0.12
CPSF1-212ENST00000616140 NFICP08651 508 aa14.32□□□□□ -0.12
CPSF1-212ENST00000616140 MARSP56192 900 aaKnown RBP14.32□□□□□ -0.12
CPSF1-212ENST00000616140 CSTF3Q12996 717 aaKnown RBP14.32□□□□□ -0.12
CPSF1-212ENST00000616140 FASTKQ14296 549 aaKnown RBP14.32□□□□□ -0.12
CPSF1-212ENST00000616140 PDK4Q16654 411 aa14.32□□□□□ -0.12
CPSF1-212ENST00000616140 TRIM16LQ309B1 348 aa14.32□□□□□ -0.12
CPSF1-212ENST00000616140 NAIF1Q69YI7 327 aaPredicted RBP14.32□□□□□ -0.12
CPSF1-212ENST00000616140 LLGL2Q6P1M3 1020 aa14.32□□□□□ -0.12
CPSF1-212ENST00000616140 KIAA0319LQ8IZA0 1049 aa14.32□□□□□ -0.12
CPSF1-212ENST00000616140 ALLCQ8N6M5 410 aa14.32□□□□□ -0.12
CPSF1-212ENST00000616140 DDHD1Q8NEL9 900 aa14.32□□□□□ -0.12
CPSF1-212ENST00000616140 RIN3Q8TB24 985 aa14.32□□□□□ -0.12
CPSF1-212ENST00000616140 PYDC1Q8WXC3 89 aa14.32□□□□□ -0.12
CPSF1-212ENST00000616140 PPP1R10Q96QC0 940 aaKnown RBP14.32□□□□□ -0.12
CPSF1-212ENST00000616140 TMEM134Q9H6X4 195 aa14.32□□□□□ -0.12
CPSF1-212ENST00000616140 RGS18Q9NS28 235 aa14.32□□□□□ -0.12
CPSF1-212ENST00000616140 CYP39A1Q9NYL5 469 aa14.32□□□□□ -0.12
CPSF1-212ENST00000616140 TRPM5Q9NZQ8 1165 aa14.32□□□□□ -0.12
CPSF1-212ENST00000616140 RAD54BQ9Y620 910 aa14.32□□□□□ -0.12
CPSF1-212ENST00000616140 OPLAHO14841 1288 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 STRNO43815 780 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 LTFP02788 710 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 PTPRAP18433 802 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 FASP25445 335 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 SERPINB1P30740 379 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 PKNOX1P55347 436 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 TRAF2Q12933 501 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 ACOX2Q99424 681 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 ZNF184Q99676 751 aaPredicted RBP14.31□□□□□ -0.12
CPSF1-212ENST00000616140 ABHD16BQ9H3Z7 469 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.31□□□□□ -0.12
CPSF1-212ENST00000616140 ADGRA3Q8IWK6 1321 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 STK25O00506 426 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 CXCL11O14625 94 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 ZNF682O95780 498 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 FAM58BPP0C7Q3 252 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 MBL2P11226 248 aaPredicted RBP14.31□□□□□ -0.12
CPSF1-212ENST00000616140 TNFSF9P41273 254 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 MMP14P50281 582 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 ZNF143P52747 638 aaPredicted RBP14.31□□□□□ -0.12
CPSF1-212ENST00000616140 ISLR2Q6UXK2 745 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 C11orf96Q7Z7L8 435 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 NT5DC4Q86YG4 428 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 STX19Q8N4C7 294 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 PGLYRP2Q96PD5 576 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 SNRNP25Q9BV90 132 aaKnown RBP14.31□□□□□ -0.12
CPSF1-212ENST00000616140 GGA2Q9UJY4 613 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 HES2Q9Y543 173 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 ARIH2O95376 493 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 DEFA1P59665 94 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 DEFA3P59666 94 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 ZNF280DQ6N043 979 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 YAF2Q8IY57 180 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 OR6Y1Q8NGX8 325 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 RNF157Q96PX1 679 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 MRIQ9BWK5 157 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 BBS2Q9BXC9 721 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 TKTL2Q9H0I9 626 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 ELOVL6Q9H5J4 265 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 ERVK-5Q9HDB9 667 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 MID1IP1Q9NPA3 183 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 SCUBE2Q9NQ36 999 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 ZC4H2Q9NQZ6 224 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 VTI1BQ9UEU0 232 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 A0A0A0MRY4 1105 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 HACD1B0YJ81 288 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 PSMB4P28070 264 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 OR1E1P30953 314 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 CAPSQ13938 189 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 HYIQ5T013 277 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 ANKS6Q68DC2 871 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 FBXO39Q8N4B4 442 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 CARNMT1Q8N4J0 409 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 TMCO5AQ8N6Q1 288 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 OR52K1Q8NGK4 314 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 COPS5Q92905 334 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 NSMCE2Q96MF7 247 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 SPATA13Q96N96 652 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 POPDC2Q9HBU9 364 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 SALL4Q9UJQ4 1053 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 CLCA2Q9UQC9 943 aa14.31□□□□□ -0.12
CPSF1-212ENST00000616140 MROH7Q68CQ1 1323 aa14.3□□□□□ -0.12
CPSF1-212ENST00000616140 CHADO15335 359 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms