RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 CCDC117Q8IWD4 279 aaPredicted RBP17.44■□□□□ 0.38
TRIM28-215ENST00000601150 CHPFQ8IZ52 775 aa17.44■□□□□ 0.38
TRIM28-215ENST00000601150 MCOLN2Q8IZK6 566 aa17.44■□□□□ 0.38
TRIM28-215ENST00000601150 CFAP52Q8N1V2 620 aa17.44■□□□□ 0.38
TRIM28-215ENST00000601150 DDX51Q8N8A6 666 aaKnown RBP eCLIP17.44■□□□□ 0.38
TRIM28-215ENST00000601150 TSTD1Q8NFU3 115 aa17.44■□□□□ 0.38
TRIM28-215ENST00000601150 JOSD2Q8TAC2 188 aa17.44■□□□□ 0.38
TRIM28-215ENST00000601150 WFIKKN2Q8TEU8 576 aa17.44■□□□□ 0.38
TRIM28-215ENST00000601150 UCMAQ8WVF2 138 aa17.44■□□□□ 0.38
TRIM28-215ENST00000601150 RXFP2Q8WXD0 754 aa17.44■□□□□ 0.38
TRIM28-215ENST00000601150 PRMT1Q99873 361 aaKnown RBP17.44■□□□□ 0.38
TRIM28-215ENST00000601150 ABCB8Q9NUT2 735 aa17.44■□□□□ 0.38
TRIM28-215ENST00000601150 ARHGEF38Q9NXL2 777 aa17.44■□□□□ 0.38
TRIM28-215ENST00000601150 LUC7L2Q9Y383 392 aaKnown RBP17.44■□□□□ 0.38
TRIM28-215ENST00000601150 BZW2Q9Y6E2 419 aaKnown RBP17.44■□□□□ 0.38
TRIM28-215ENST00000601150 C2CD4BA6NLJ0 364 aa17.43■□□□□ 0.38
TRIM28-215ENST00000601150 TMCO5BA8MYB1 307 aa17.43■□□□□ 0.38
TRIM28-215ENST00000601150 NPC1O15118 1278 aa17.43■□□□□ 0.38
TRIM28-215ENST00000601150 TIMM44O43615 452 aa17.43■□□□□ 0.38
TRIM28-215ENST00000601150 PAGE1O75459 146 aa17.43■□□□□ 0.38
TRIM28-215ENST00000601150 GJB6O95452 261 aa17.43■□□□□ 0.38
TRIM28-215ENST00000601150 PABPC1P11940 636 aaKnown RBP17.43■□□□□ 0.38
TRIM28-215ENST00000601150 SKILP12757 684 aa17.43■□□□□ 0.38
TRIM28-215ENST00000601150 PDGFRAP16234 1089 aa17.43■□□□□ 0.38
TRIM28-215ENST00000601150 HLA-FP30511 346 aa17.43■□□□□ 0.38
TRIM28-215ENST00000601150 SDC4P31431 198 aa17.43■□□□□ 0.38
TRIM28-215ENST00000601150 CNR2P34972 360 aa17.43■□□□□ 0.38
TRIM28-215ENST00000601150 MRE11P49959 708 aa17.43■□□□□ 0.38
TRIM28-215ENST00000601150 RABGAP1LQ5R372 815 aa17.43■□□□□ 0.38
TRIM28-215ENST00000601150 TTC39BQ5VTQ0 682 aaPredicted RBP17.43■□□□□ 0.38
TRIM28-215ENST00000601150 DNAJC24Q6P3W2 148 aa17.43■□□□□ 0.38
TRIM28-215ENST00000601150 TMEM92Q6UXU6 159 aa17.43■□□□□ 0.38
TRIM28-215ENST00000601150 BNIPLQ7Z465 357 aa17.43■□□□□ 0.38
TRIM28-215ENST00000601150 MFN1Q8IWA4 741 aa17.43■□□□□ 0.38
TRIM28-215ENST00000601150 FIBINQ8TAL6 211 aa17.43■□□□□ 0.38
TRIM28-215ENST00000601150 VCPIP1Q96JH7 1222 aa17.43■□□□□ 0.38
TRIM28-215ENST00000601150 ACOX2Q99424 681 aa17.43■□□□□ 0.38
TRIM28-215ENST00000601150 CIPCQ9C0C6 399 aa17.43■□□□□ 0.38
TRIM28-215ENST00000601150 TKTL2Q9H0I9 626 aa17.43■□□□□ 0.38
TRIM28-215ENST00000601150 POLMQ9NP87 494 aaPredicted RBP17.43■□□□□ 0.38
TRIM28-215ENST00000601150 ELOVL2Q9NXB9 296 aa17.43■□□□□ 0.38
TRIM28-215ENST00000601150 TAS2R14Q9NYV8 317 aa17.43■□□□□ 0.38
TRIM28-215ENST00000601150 GGA2Q9UJY4 613 aa17.43■□□□□ 0.38
TRIM28-215ENST00000601150 HS3ST4Q9Y661 456 aa17.43■□□□□ 0.38
TRIM28-215ENST00000601150 TCRBV5S1A1TA0A578 114 aa17.42■□□□□ 0.38
TRIM28-215ENST00000601150 PRR23AA6NEV1 266 aa17.42■□□□□ 0.38
TRIM28-215ENST00000601150 SIGLEC16A6NMB1 481 aa17.42■□□□□ 0.38
TRIM28-215ENST00000601150 DDX3XO00571 662 aaKnown RBP eCLIP17.42■□□□□ 0.38
TRIM28-215ENST00000601150 AXIN1O15169 862 aa17.42■□□□□ 0.38
TRIM28-215ENST00000601150 ALDH1A2O94788 518 aa17.42■□□□□ 0.38
TRIM28-215ENST00000601150 ENDOD1O94919 500 aa17.42■□□□□ 0.38
TRIM28-215ENST00000601150 LUC7L3O95232 432 aaKnown RBP17.42■□□□□ 0.38
TRIM28-215ENST00000601150 ADCY5O95622 1261 aa17.42■□□□□ 0.38
TRIM28-215ENST00000601150 LMNAP02545 664 aaKnown RBP17.42■□□□□ 0.38
TRIM28-215ENST00000601150 GZMAP12544 262 aa17.42■□□□□ 0.38
TRIM28-215ENST00000601150 HOXB2P14652 356 aa17.42■□□□□ 0.38
TRIM28-215ENST00000601150 RFC1P35251 1148 aaPredicted RBP17.42■□□□□ 0.38
TRIM28-215ENST00000601150 WASP42768 502 aa17.42■□□□□ 0.38
TRIM28-215ENST00000601150 PTPN9P43378 593 aa17.42■□□□□ 0.38
TRIM28-215ENST00000601150 ATP11AP98196 1134 aa17.42■□□□□ 0.38
TRIM28-215ENST00000601150 CDH18Q13634 790 aa17.42■□□□□ 0.38
TRIM28-215ENST00000601150 AUHQ13825 339 aaKnown RBP17.42■□□□□ 0.38
TRIM28-215ENST00000601150 CCDC14Q49A88 953 aa17.42■□□□□ 0.38
TRIM28-215ENST00000601150 TDRD12Q587J7 1177 aaKnown RBP17.42■□□□□ 0.38
TRIM28-215ENST00000601150 HGSNATQ68CP4 663 aa17.42■□□□□ 0.38
TRIM28-215ENST00000601150 SPECC1LQ69YQ0 1117 aa17.42■□□□□ 0.38
TRIM28-215ENST00000601150 KIAA0907Q7Z7F0 614 aaPredicted RBP17.42■□□□□ 0.38
TRIM28-215ENST00000601150 AHI1Q8N157 1196 aa17.42■□□□□ 0.38
TRIM28-215ENST00000601150 CARNMT1Q8N4J0 409 aa17.42■□□□□ 0.38
TRIM28-215ENST00000601150 WFDC5Q8TCV5 224 aa17.42■□□□□ 0.38
TRIM28-215ENST00000601150 SIK2Q9H0K1 926 aa17.42■□□□□ 0.38
TRIM28-215ENST00000601150 EPC1Q9H2F5 836 aa17.42■□□□□ 0.38
TRIM28-215ENST00000601150 THAP10Q9P2Z0 257 aaPredicted RBP17.42■□□□□ 0.38
TRIM28-215ENST00000601150 EBF1Q9UH73 591 aa17.42■□□□□ 0.38
TRIM28-215ENST00000601150 MUC22E2RYF6 1773 aaPredicted RBP17.41■□□□□ 0.38
TRIM28-215ENST00000601150 ANKRD62A6NC57 917 aa17.41■□□□□ 0.38
TRIM28-215ENST00000601150 HRO43593 1189 aa17.41■□□□□ 0.38
TRIM28-215ENST00000601150 RTN2O75298 545 aa17.41■□□□□ 0.38
TRIM28-215ENST00000601150 SERPING1P05155 500 aa17.41■□□□□ 0.38
TRIM28-215ENST00000601150 GPD1P21695 349 aa17.41■□□□□ 0.38
TRIM28-215ENST00000601150 RRM1P23921 792 aa17.41■□□□□ 0.38
TRIM28-215ENST00000601150 CASP14P31944 242 aa17.41■□□□□ 0.38
TRIM28-215ENST00000601150 CD70P32970 193 aa17.41■□□□□ 0.38
TRIM28-215ENST00000601150 ATXN1P54253 815 aaKnown RBP17.41■□□□□ 0.38
TRIM28-215ENST00000601150 TRIM14Q14142 442 aa17.41■□□□□ 0.38
TRIM28-215ENST00000601150 CDO1Q16878 200 aa17.41■□□□□ 0.38
TRIM28-215ENST00000601150 C15orf59Q2T9L4 293 aaPredicted RBP17.41■□□□□ 0.38
TRIM28-215ENST00000601150 ACBD5Q5T8D3 534 aaPredicted RBP17.41■□□□□ 0.38
TRIM28-215ENST00000601150 TMEM215Q68D42 235 aa17.41■□□□□ 0.38
TRIM28-215ENST00000601150 ANO7Q6IWH7 933 aa17.41■□□□□ 0.38
TRIM28-215ENST00000601150 FBXL22Q6P050 247 aa17.41■□□□□ 0.38
TRIM28-215ENST00000601150 WDR59Q6PJI9 974 aa17.41■□□□□ 0.38
TRIM28-215ENST00000601150 CHST9Q7L1S5 443 aa17.41■□□□□ 0.38
TRIM28-215ENST00000601150 STRADAQ7RTN6 431 aa17.41■□□□□ 0.38
TRIM28-215ENST00000601150 ASCL5Q7RTU5 278 aa17.41■□□□□ 0.38
TRIM28-215ENST00000601150 ADIPOR2Q86V24 386 aa17.41■□□□□ 0.38
TRIM28-215ENST00000601150 ALYREFQ86V81 257 aaKnown RBP17.41■□□□□ 0.38
TRIM28-215ENST00000601150 VPS36Q86VN1 386 aa17.41■□□□□ 0.38
TRIM28-215ENST00000601150 RASSF3Q86WH2 238 aa17.41■□□□□ 0.38
TRIM28-215ENST00000601150 RPRD1AQ96P16 312 aaPredicted RBP17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms