RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 PRICKLE1Q96MT3 831 aaPredicted RBP18.85■□□□□ 0.61
UPF1-210ENST00000600689 CAB39LQ9H9S4 337 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 FAM49BQ9NUQ9 324 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 ARHGAP26Q9UNA1 814 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 SSX2IPQ9Y2D8 614 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 SYNJ2BP-COX16A0A087WUM0 186 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 PLIN3O60664 434 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 CSPG5O95196 566 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 TFE3P19532 575 aaPredicted RBP18.85■□□□□ 0.61
UPF1-210ENST00000600689 MAP3K21Q5TCX8 1036 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 PPP1R2P3Q6NXS1 205 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 RNF149Q8NC42 400 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 SORT1Q99523 831 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 ZNF518BQ9C0D4 1074 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 PORCNQ9H237 461 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 ANLNQ9NQW6 1124 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 COX16Q9P0S2 106 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 FIS1Q9Y3D6 152 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 SMIM31A0A1B0GVY4 71 aa18.84■□□□□ 0.61
UPF1-210ENST00000600689 B4GALT5O43286 388 aa18.84■□□□□ 0.61
UPF1-210ENST00000600689 USP2O75604 605 aaPredicted RBP18.84■□□□□ 0.61
UPF1-210ENST00000600689 GPD1P21695 349 aa18.84■□□□□ 0.61
UPF1-210ENST00000600689 MGAT1P26572 445 aa18.84■□□□□ 0.61
UPF1-210ENST00000600689 RGS2P41220 211 aa18.84■□□□□ 0.61
UPF1-210ENST00000600689 VGLL4Q14135 290 aa18.84■□□□□ 0.61
UPF1-210ENST00000600689 TMEM198Q66K66 360 aa18.84■□□□□ 0.61
UPF1-210ENST00000600689 ZBTB46Q86UZ6 589 aa18.84■□□□□ 0.61
UPF1-210ENST00000600689 UBR7Q8N806 425 aa18.84■□□□□ 0.61
UPF1-210ENST00000600689 GRIN3AQ8TCU5 1115 aa18.84■□□□□ 0.61
UPF1-210ENST00000600689 NLRP4Q96MN2 994 aa18.84■□□□□ 0.61
UPF1-210ENST00000600689 HOXC10Q9NYD6 342 aa18.84■□□□□ 0.61
UPF1-210ENST00000600689 GNEQ9Y223 722 aaKnown RBP18.84■□□□□ 0.61
UPF1-210ENST00000600689 EFR3BQ9Y2G0 817 aa18.84■□□□□ 0.61
UPF1-210ENST00000600689 LTBP3Q9NS15 1303 aa18.84■□□□□ 0.61
UPF1-210ENST00000600689 H0YCG3 227 aa18.84■□□□□ 0.61
UPF1-210ENST00000600689 USP12O75317 370 aa18.84■□□□□ 0.61
UPF1-210ENST00000600689 TMCC1O94876 653 aa18.84■□□□□ 0.61
UPF1-210ENST00000600689 IL1BP01584 269 aa18.84■□□□□ 0.61
UPF1-210ENST00000600689 CXCL8P10145 99 aa18.84■□□□□ 0.61
UPF1-210ENST00000600689 EPHA3P29320 983 aa18.84■□□□□ 0.61
UPF1-210ENST00000600689 THOP1P52888 689 aa18.84■□□□□ 0.61
UPF1-210ENST00000600689 CDKL1Q00532 357 aa18.84■□□□□ 0.61
UPF1-210ENST00000600689 ZNF667Q5HYK9 610 aa18.84■□□□□ 0.61
UPF1-210ENST00000600689 SPNS2Q8IVW8 549 aa18.84■□□□□ 0.61
UPF1-210ENST00000600689 MAP7D3Q8IWC1 876 aa18.84■□□□□ 0.61
UPF1-210ENST00000600689 ATP2A3Q93084 1043 aa18.84■□□□□ 0.61
UPF1-210ENST00000600689 HSPBAP1Q96EW2 488 aa18.84■□□□□ 0.61
UPF1-210ENST00000600689 TMA16Q96EY4 203 aaKnown RBP18.84■□□□□ 0.61
UPF1-210ENST00000600689 ZDHHC7Q9NXF8 308 aa18.84■□□□□ 0.61
UPF1-210ENST00000600689 ZNF180Q9UJW8 692 aa18.84■□□□□ 0.61
UPF1-210ENST00000600689 TMCO1Q9UM00 188 aa18.84■□□□□ 0.61
UPF1-210ENST00000600689 GOLGA8TH3BQL2 631 aa18.83■□□□□ 0.61
UPF1-210ENST00000600689 SERPINE1P05121 402 aa18.83■□□□□ 0.61
UPF1-210ENST00000600689 SUPT20HL2P0C7V6 817 aa18.83■□□□□ 0.61
UPF1-210ENST00000600689 RPL10P27635 214 aaKnown RBP18.83■□□□□ 0.61
UPF1-210ENST00000600689 KLF10Q13118 480 aa18.83■□□□□ 0.61
UPF1-210ENST00000600689 SUPT20HL1Q3ZLR7 823 aa18.83■□□□□ 0.61
UPF1-210ENST00000600689 PGM2L1Q6PCE3 622 aa18.83■□□□□ 0.61
UPF1-210ENST00000600689 AGAP3Q96P47 875 aa18.83■□□□□ 0.61
UPF1-210ENST00000600689 SGIP1Q9BQI5 828 aa18.83■□□□□ 0.61
UPF1-210ENST00000600689 ELOVL4Q9GZR5 314 aa18.83■□□□□ 0.61
UPF1-210ENST00000600689 INO80B-WBP1J3KQ70 363 aa18.83■□□□□ 0.6
UPF1-210ENST00000600689 FOXD2O60548 495 aaPredicted RBP18.83■□□□□ 0.6
UPF1-210ENST00000600689 TSHRP16473 764 aa18.83■□□□□ 0.6
UPF1-210ENST00000600689 NAMPTP43490 491 aa18.83■□□□□ 0.6
UPF1-210ENST00000600689 GABRB2P47870 512 aa18.83■□□□□ 0.6
UPF1-210ENST00000600689 HPCAP84074 193 aa18.83■□□□□ 0.6
UPF1-210ENST00000600689 MYBPC1Q00872 1141 aa18.83■□□□□ 0.6
UPF1-210ENST00000600689 SNAPC2Q13487 334 aa18.83■□□□□ 0.6
UPF1-210ENST00000600689 FAM183BPQ6ZVS7 135 aa18.83■□□□□ 0.6
UPF1-210ENST00000600689 ZNF534Q76KX8 674 aa18.83■□□□□ 0.6
UPF1-210ENST00000600689 WDR49Q8IV35 697 aa18.83■□□□□ 0.6
UPF1-210ENST00000600689 PLD6Q8N2A8 252 aaKnown RBP18.83■□□□□ 0.6
UPF1-210ENST00000600689 BHLHE22Q8NFJ8 381 aaPredicted RBP18.83■□□□□ 0.6
UPF1-210ENST00000600689 TMIGD2Q96BF3 282 aa18.83■□□□□ 0.6
UPF1-210ENST00000600689 INO80BQ9C086 356 aaPredicted RBP18.83■□□□□ 0.6
UPF1-210ENST00000600689 NRDE2Q9H7Z3 1164 aa18.83■□□□□ 0.6
UPF1-210ENST00000600689 RNF19AQ9NV58 838 aa18.83■□□□□ 0.6
UPF1-210ENST00000600689 ITGA11Q9UKX5 1188 aa18.83■□□□□ 0.6
UPF1-210ENST00000600689 ZNF711Q9Y462 761 aa18.83■□□□□ 0.6
UPF1-210ENST00000600689 DKC1O60832 514 aaKnown RBP eCLIP18.82■□□□□ 0.6
UPF1-210ENST00000600689 TNNC2P02585 160 aa18.82■□□□□ 0.6
UPF1-210ENST00000600689 OATP04181 439 aa18.82■□□□□ 0.6
UPF1-210ENST00000600689 HDAC4P56524 1084 aa18.82■□□□□ 0.6
UPF1-210ENST00000600689 ABCE1P61221 599 aaKnown RBP18.82■□□□□ 0.6
UPF1-210ENST00000600689 GRM2Q14416 872 aa18.82■□□□□ 0.6
UPF1-210ENST00000600689 TRIM50Q86XT4 487 aa18.82■□□□□ 0.6
UPF1-210ENST00000600689 SCUBE3Q8IX30 993 aa18.82■□□□□ 0.6
UPF1-210ENST00000600689 B3GNT5Q9BYG0 378 aa18.82■□□□□ 0.6
UPF1-210ENST00000600689 HES2Q9Y543 173 aa18.82■□□□□ 0.6
UPF1-210ENST00000600689 STYXL1Q9Y6J8 313 aa18.82■□□□□ 0.6
UPF1-210ENST00000600689 FAM159BA6NKW6 160 aa18.82■□□□□ 0.6
UPF1-210ENST00000600689 ATG7O95352 703 aa18.82■□□□□ 0.6
UPF1-210ENST00000600689 ITGB3P05106 788 aa18.82■□□□□ 0.6
UPF1-210ENST00000600689 CHRNGP07510 517 aa18.82■□□□□ 0.6
UPF1-210ENST00000600689 IL4RP24394 825 aa18.82■□□□□ 0.6
UPF1-210ENST00000600689 ADARP55265 1226 aaKnown RBP18.82■□□□□ 0.6
UPF1-210ENST00000600689 PTPN11Q06124 597 aaPredicted RBP18.82■□□□□ 0.6
UPF1-210ENST00000600689 SLC10A2Q12908 348 aaPredicted RBP18.82■□□□□ 0.6
UPF1-210ENST00000600689 STXBP2Q15833 593 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms