RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 C4orf47A7E2U8 309 aa12.53□□□□□ -0.4
SHKBP1-213ENST00000597325 HYAL3O43820 417 aaPredicted RBP12.53□□□□□ -0.4
SHKBP1-213ENST00000597325 PROSCO94903 275 aa12.53□□□□□ -0.4
SHKBP1-213ENST00000597325 MYL4P12829 197 aa12.53□□□□□ -0.4
SHKBP1-213ENST00000597325 PTPN2P17706 415 aa12.53□□□□□ -0.4
SHKBP1-213ENST00000597325 CSRP1P21291 193 aaKnown RBP12.53□□□□□ -0.4
SHKBP1-213ENST00000597325 CDC25CP30307 473 aa12.53□□□□□ -0.4
SHKBP1-213ENST00000597325 HOXA6P31267 233 aa12.53□□□□□ -0.4
SHKBP1-213ENST00000597325 SLC1A1P43005 524 aa12.53□□□□□ -0.4
SHKBP1-213ENST00000597325 SSR1P43307 286 aaKnown RBP12.53□□□□□ -0.4
SHKBP1-213ENST00000597325 GNG11P61952 73 aa12.53□□□□□ -0.4
SHKBP1-213ENST00000597325 CDO1Q16878 200 aa12.53□□□□□ -0.4
SHKBP1-213ENST00000597325 HEATR6Q6AI08 1181 aaKnown RBP12.53□□□□□ -0.4
SHKBP1-213ENST00000597325 TCEAL6Q6IPX3 200 aa12.53□□□□□ -0.4
SHKBP1-213ENST00000597325 PDZD4Q76G19 769 aaPredicted RBP12.53□□□□□ -0.4
SHKBP1-213ENST00000597325 PEX26Q7Z412 305 aa12.53□□□□□ -0.4
SHKBP1-213ENST00000597325 SCD5Q86SK9 330 aa12.53□□□□□ -0.4
SHKBP1-213ENST00000597325 WDR5BQ86VZ2 330 aa12.53□□□□□ -0.4
SHKBP1-213ENST00000597325 NPAS3Q8IXF0 933 aa12.53□□□□□ -0.4
SHKBP1-213ENST00000597325 NIPA2Q8N8Q9 360 aa12.53□□□□□ -0.4
SHKBP1-213ENST00000597325 TCEAL3Q969E4 200 aa12.53□□□□□ -0.4
SHKBP1-213ENST00000597325 CFAP57Q96MR6 1250 aa12.53□□□□□ -0.4
SHKBP1-213ENST00000597325 C2orf42Q9NWW7 574 aa12.53□□□□□ -0.4
SHKBP1-213ENST00000597325 KLK13Q9UKR3 277 aa12.53□□□□□ -0.4
SHKBP1-213ENST00000597325 NAALADL1Q9UQQ1 740 aa12.53□□□□□ -0.4
SHKBP1-213ENST00000597325 PCDHGA5Q9Y5G8 931 aa12.53□□□□□ -0.4
SHKBP1-213ENST00000597325 ASXL3Q9C0F0 2248 aa12.52□□□□□ -0.41
SHKBP1-213ENST00000597325 FAM221BA6H8Z2 402 aa12.52□□□□□ -0.41
SHKBP1-213ENST00000597325 FTCDO95954 541 aa12.52□□□□□ -0.41
SHKBP1-213ENST00000597325 TUBB4AP04350 444 aa12.52□□□□□ -0.41
SHKBP1-213ENST00000597325 RARGP13631 454 aa12.52□□□□□ -0.41
SHKBP1-213ENST00000597325 COMTP21964 271 aa12.52□□□□□ -0.41
SHKBP1-213ENST00000597325 GABRR2P28476 465 aa12.52□□□□□ -0.41
SHKBP1-213ENST00000597325 GBP1P32455 592 aa12.52□□□□□ -0.41
SHKBP1-213ENST00000597325 MPLP40238 635 aa12.52□□□□□ -0.41
SHKBP1-213ENST00000597325 TUBP50607 506 aa12.52□□□□□ -0.41
SHKBP1-213ENST00000597325 ATP11AP98196 1134 aa12.52□□□□□ -0.41
SHKBP1-213ENST00000597325 OGDHQ02218 1023 aa12.52□□□□□ -0.41
SHKBP1-213ENST00000597325 SLC25A52Q3SY17 297 aa12.52□□□□□ -0.41
SHKBP1-213ENST00000597325 CCDC14Q49A88 953 aa12.52□□□□□ -0.41
SHKBP1-213ENST00000597325 ARHGAP15Q53QZ3 475 aa12.52□□□□□ -0.41
SHKBP1-213ENST00000597325 C10orf120Q5SQS8 335 aa12.52□□□□□ -0.41
SHKBP1-213ENST00000597325 HECTD3Q5T447 861 aa12.52□□□□□ -0.41
SHKBP1-213ENST00000597325 TRNP1Q6NT89 227 aa12.52□□□□□ -0.41
SHKBP1-213ENST00000597325 NYAP1Q6ZVC0 841 aa12.52□□□□□ -0.41
SHKBP1-213ENST00000597325 SND1Q7KZF4 910 aaKnown RBP eCLIP12.52□□□□□ -0.41
SHKBP1-213ENST00000597325 KBTBD6Q86V97 674 aa12.52□□□□□ -0.41
SHKBP1-213ENST00000597325 TMC8Q8IU68 726 aa12.52□□□□□ -0.41
SHKBP1-213ENST00000597325 SLC35F6Q8N357 371 aa12.52□□□□□ -0.41
SHKBP1-213ENST00000597325 LRRC57Q8N9N7 239 aa12.52□□□□□ -0.41
SHKBP1-213ENST00000597325 FAM172AQ8WUF8 416 aa12.52□□□□□ -0.41
SHKBP1-213ENST00000597325 MRPS31Q92665 395 aaKnown RBP12.52□□□□□ -0.41
SHKBP1-213ENST00000597325 EDEM2Q9BV94 578 aa12.52□□□□□ -0.41
SHKBP1-213ENST00000597325 IRX2Q9BZI1 471 aaPredicted RBP12.52□□□□□ -0.41
SHKBP1-213ENST00000597325 NMUR1Q9HB89 426 aa12.52□□□□□ -0.41
SHKBP1-213ENST00000597325 ZNF334Q9HCZ1 680 aaPredicted RBP12.52□□□□□ -0.41
SHKBP1-213ENST00000597325 TMEM51Q9NW97 253 aa12.52□□□□□ -0.41
SHKBP1-213ENST00000597325 AMFRQ9UKV5 643 aa12.52□□□□□ -0.41
SHKBP1-213ENST00000597325 ATMQ13315 3056 aa12.52□□□□□ -0.41
SHKBP1-213ENST00000597325 ZNF462Q96JM2 2506 aa12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 SYNJ2BP-COX16A0A087WUM0 186 aa12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 ZNF840PA6NDX5 716 aa12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 M0QYT0 321 aa12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 TLR5O60602 858 aa12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 RHOP08100 348 aa12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 ZDHHC11BP0C7U3 371 aa12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 RDXP35241 583 aaKnown RBP12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 GJC1P36383 396 aa12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 DEUP1Q05D60 604 aa12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 NME3Q13232 169 aa12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 HADHQ16836 314 aaKnown RBP12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 C15orf59Q2T9L4 293 aaPredicted RBP12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 SNX30Q5VWJ9 437 aa12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 SYPL2Q5VXT5 272 aa12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 KIAA1211LQ6NV74 962 aa12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 MSANTD2Q6P1R3 559 aa12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 STRADAQ7RTN6 431 aa12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 TAC4Q86UU9 113 aa12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 HS6ST3Q8IZP7 471 aa12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 DQX1Q8TE96 717 aaKnown RBP12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 UBE2Q2Q8WVN8 375 aa12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 FAM3CQ92520 227 aa12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 SERPINB11Q96P15 392 aa12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 TBCBQ99426 244 aa12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 NPY6RQ99463 290 aa12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 ATXN3LQ9H3M9 355 aa12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 GOLPH3Q9H4A6 298 aa12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 TRPC7Q9HCX4 862 aa12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 VPS45Q9NRW7 570 aa12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 HCFC1R1Q9NWW0 138 aa12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 DDIT4Q9NX09 232 aa12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 OSER1Q9NX31 292 aa12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 COX16Q9P0S2 106 aa12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 RASAL2Q9UJF2 1139 aa12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 DNMT3LQ9UJW3 386 aa12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 JRKLQ9Y4A0 524 aa12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 HYOU1Q9Y4L1 999 aa12.51□□□□□ -0.41
SHKBP1-213ENST00000597325 ALG6Q9Y672 507 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms