RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 ZNF513Q8N8E2 541 aaPredicted RBP11.55□□□□□ -0.56
VRK3-210ENST00000596121 SUMF1Q8NBK3 374 aa11.55□□□□□ -0.56
VRK3-210ENST00000596121 PGAP3Q96FM1 320 aaPredicted RBP11.55□□□□□ -0.56
VRK3-210ENST00000596121 BTN2A3PQ96KV6 586 aa11.55□□□□□ -0.56
VRK3-210ENST00000596121 NUP58Q9BVL2 599 aa11.55□□□□□ -0.56
VRK3-210ENST00000596121 SLC2A11Q9BYW1 496 aa11.55□□□□□ -0.56
VRK3-210ENST00000596121 RBSNQ9H1K0 784 aa11.55□□□□□ -0.56
VRK3-210ENST00000596121 ARHGEF38Q9NXL2 777 aa11.55□□□□□ -0.56
VRK3-210ENST00000596121 INTS6Q9UL03 887 aaKnown RBP11.55□□□□□ -0.56
VRK3-210ENST00000596121 SLC8A2Q9UPR5 921 aa11.55□□□□□ -0.56
VRK3-210ENST00000596121 PCDHGA2Q9Y5H1 932 aa11.55□□□□□ -0.56
VRK3-210ENST00000596121 HS3ST4Q9Y661 456 aa11.55□□□□□ -0.56
VRK3-210ENST00000596121 OTOGLQ3ZCN5 2332 aa11.54□□□□□ -0.56
VRK3-210ENST00000596121 A0A1W2PQF6 199 aa11.54□□□□□ -0.56
VRK3-210ENST00000596121 SIGLEC16A6NMB1 481 aa11.54□□□□□ -0.56
VRK3-210ENST00000596121 CCDC172P0C7W6 258 aa11.54□□□□□ -0.56
VRK3-210ENST00000596121 RPL7AP62424 266 aaKnown RBP11.54□□□□□ -0.56
VRK3-210ENST00000596121 ZBED6P86452 979 aa11.54□□□□□ -0.56
VRK3-210ENST00000596121 ATP11AP98196 1134 aa11.54□□□□□ -0.56
VRK3-210ENST00000596121 OGDHQ02218 1023 aa11.54□□□□□ -0.56
VRK3-210ENST00000596121 DEUP1Q05D60 604 aa11.54□□□□□ -0.56
VRK3-210ENST00000596121 KLHL30Q0D2K2 578 aa11.54□□□□□ -0.56
VRK3-210ENST00000596121 MPP7Q5T2T1 576 aa11.54□□□□□ -0.56
VRK3-210ENST00000596121 KIAA1211LQ6NV74 962 aa11.54□□□□□ -0.56
VRK3-210ENST00000596121 WDR59Q6PJI9 974 aa11.54□□□□□ -0.56
VRK3-210ENST00000596121 ALYREFQ86V81 257 aaKnown RBP11.54□□□□□ -0.56
VRK3-210ENST00000596121 LONP2Q86WA8 852 aa11.54□□□□□ -0.56
VRK3-210ENST00000596121 CHSY1Q86X52 802 aa11.54□□□□□ -0.56
VRK3-210ENST00000596121 VSTM4Q8IW00 320 aa11.54□□□□□ -0.56
VRK3-210ENST00000596121 ZNF683Q8IZ20 524 aa11.54□□□□□ -0.56
VRK3-210ENST00000596121 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.54□□□□□ -0.56
VRK3-210ENST00000596121 ATP6V0D2Q8N8Y2 350 aa11.54□□□□□ -0.56
VRK3-210ENST00000596121 HJURPQ8NCD3 748 aaPredicted RBP11.54□□□□□ -0.56
VRK3-210ENST00000596121 MSANTD4Q8NCY6 345 aa11.54□□□□□ -0.56
VRK3-210ENST00000596121 C3orf20Q8ND61 904 aa11.54□□□□□ -0.56
VRK3-210ENST00000596121 FIBINQ8TAL6 211 aa11.54□□□□□ -0.56
VRK3-210ENST00000596121 CENPIQ92674 756 aaPredicted RBP11.54□□□□□ -0.56
VRK3-210ENST00000596121 SYN2Q92777 582 aaPredicted RBP11.54□□□□□ -0.56
VRK3-210ENST00000596121 RNF34Q969K3 372 aa11.54□□□□□ -0.56
VRK3-210ENST00000596121 ACDQ96AP0 544 aa11.54□□□□□ -0.56
VRK3-210ENST00000596121 FAM126AQ9BYI3 521 aaPredicted RBP11.54□□□□□ -0.56
VRK3-210ENST00000596121 IRX2Q9BZI1 471 aaPredicted RBP11.54□□□□□ -0.56
VRK3-210ENST00000596121 TKTL2Q9H0I9 626 aa11.54□□□□□ -0.56
VRK3-210ENST00000596121 ABCB8Q9NUT2 735 aa11.54□□□□□ -0.56
VRK3-210ENST00000596121 ELOVL2Q9NXB9 296 aa11.54□□□□□ -0.56
VRK3-210ENST00000596121 CACNA2D2Q9NY47 1150 aa11.54□□□□□ -0.56
VRK3-210ENST00000596121 RRN3Q9NYV6 651 aa11.54□□□□□ -0.56
VRK3-210ENST00000596121 STAP1Q9ULZ2 295 aa11.54□□□□□ -0.56
VRK3-210ENST00000596121 RAD54BQ9Y620 910 aa11.54□□□□□ -0.56
VRK3-210ENST00000596121 ITIH6Q6UXX5 1313 aa11.54□□□□□ -0.56
VRK3-210ENST00000596121 PRR23AA6NEV1 266 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 ATMINO43313 823 aaPredicted RBP11.53□□□□□ -0.56
VRK3-210ENST00000596121 CNTN5O94779 1100 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 FTLP02792 175 aaPredicted RBP11.53□□□□□ -0.56
VRK3-210ENST00000596121 CALB1P05937 261 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 SLC2A3P11169 496 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 KRT3P12035 628 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 PDGFRAP16234 1089 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 ABCB4P21439 1286 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 NTSR1P30989 418 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 PTPN9P43378 593 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 MRE11P49959 708 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 LMAN2Q12907 356 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 MAMLD1Q13495 774 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 ENPP2Q13822 863 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 PTPRNQ16849 979 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 C5orf22Q49AR2 442 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 ANKS1BQ7Z6G8 1248 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 WDR5BQ86VZ2 330 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 RASSF3Q86WH2 238 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 FAM131BQ86XD5 332 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 CAMKK1Q8N5S9 505 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 OR52K2Q8NGK3 314 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 KCNV2Q8TDN2 545 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 CYB5D2Q8WUJ1 264 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 ATRIPQ8WXE1 791 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 GABRG3Q99928 467 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 DDX50Q9BQ39 737 aaKnown RBP11.53□□□□□ -0.56
VRK3-210ENST00000596121 TRIM7Q9C029 511 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 SIK2Q9H0K1 926 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 SLC6A17Q9H1V8 727 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 WDCPQ9H6R7 721 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 ARHGAP20Q9P2F6 1191 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 THAP10Q9P2Z0 257 aaPredicted RBP11.53□□□□□ -0.56
VRK3-210ENST00000596121 EBF1Q9UH73 591 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 GGA2Q9UJY4 613 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 VANGL2Q9ULK5 521 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 NENFQ9UMX5 172 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 LUC7L2Q9Y383 392 aaKnown RBP11.53□□□□□ -0.56
VRK3-210ENST00000596121 SDK1Q7Z5N4 2213 aa11.53□□□□□ -0.56
VRK3-210ENST00000596121 PTPRZ1P23471 2315 aaPredicted RBP11.53□□□□□ -0.56
VRK3-210ENST00000596121 A0A087X0T9 212 aa11.52□□□□□ -0.57
VRK3-210ENST00000596121 F5H5T6 163 aa11.52□□□□□ -0.57
VRK3-210ENST00000596121 DCLK1O15075 740 aa11.52□□□□□ -0.57
VRK3-210ENST00000596121 CCP110O43303 1012 aa11.52□□□□□ -0.57
VRK3-210ENST00000596121 LUC7L3O95232 432 aaKnown RBP11.52□□□□□ -0.57
VRK3-210ENST00000596121 APBB3O95704 486 aa11.52□□□□□ -0.57
VRK3-210ENST00000596121 SERPING1P05155 500 aa11.52□□□□□ -0.57
VRK3-210ENST00000596121 FAM228BP0C875 321 aa11.52□□□□□ -0.57
VRK3-210ENST00000596121 PABPC1P11940 636 aaKnown RBP11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms