RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 SYCP1Q15431 976 aa18.38■□□□□ 0.53
SHKBP1-204ENST00000594862 MAP7D1Q3KQU3 841 aa18.38■□□□□ 0.53
SHKBP1-204ENST00000594862 ANO6Q4KMQ2 910 aa18.38■□□□□ 0.53
SHKBP1-204ENST00000594862 ZC3H12AQ5D1E8 599 aaKnown RBP18.38■□□□□ 0.53
SHKBP1-204ENST00000594862 RABGAP1LQ5R372 815 aa18.38■□□□□ 0.53
SHKBP1-204ENST00000594862 ACBD5Q5T8D3 534 aaPredicted RBP18.38■□□□□ 0.53
SHKBP1-204ENST00000594862 CHST9Q7L1S5 443 aa18.38■□□□□ 0.53
SHKBP1-204ENST00000594862 CYP2U1Q7Z449 544 aa18.38■□□□□ 0.53
SHKBP1-204ENST00000594862 NOP9Q86U38 636 aaKnown RBP18.38■□□□□ 0.53
SHKBP1-204ENST00000594862 METTL3Q86U44 580 aaKnown RBP18.38■□□□□ 0.53
SHKBP1-204ENST00000594862 CHSY1Q86X52 802 aa18.38■□□□□ 0.53
SHKBP1-204ENST00000594862 AOPEPQ8N6M6 819 aa18.38■□□□□ 0.53
SHKBP1-204ENST00000594862 FIBINQ8TAL6 211 aa18.38■□□□□ 0.53
SHKBP1-204ENST00000594862 DDX1Q92499 740 aaKnown RBP18.38■□□□□ 0.53
SHKBP1-204ENST00000594862 RNF34Q969K3 372 aa18.38■□□□□ 0.53
SHKBP1-204ENST00000594862 PRICKLE1Q96MT3 831 aaPredicted RBP18.38■□□□□ 0.53
SHKBP1-204ENST00000594862 CD248Q9HCU0 757 aa18.38■□□□□ 0.53
SHKBP1-204ENST00000594862 CLEC4EQ9ULY5 219 aa18.38■□□□□ 0.53
SHKBP1-204ENST00000594862 TPRP12270 2363 aaKnown RBP18.38■□□□□ 0.53
SHKBP1-204ENST00000594862 BCLAF3A2AJT9 711 aaKnown RBP18.37■□□□□ 0.53
SHKBP1-204ENST00000594862 GFPT2O94808 682 aa18.37■□□□□ 0.53
SHKBP1-204ENST00000594862 LUC7L3O95232 432 aaKnown RBP18.37■□□□□ 0.53
SHKBP1-204ENST00000594862 MOCS3O95396 460 aa18.37■□□□□ 0.53
SHKBP1-204ENST00000594862 F9P00740 461 aa18.37■□□□□ 0.53
SHKBP1-204ENST00000594862 DLDP09622 509 aaKnown RBP18.37■□□□□ 0.53
SHKBP1-204ENST00000594862 CCDC172P0C7W6 258 aa18.37■□□□□ 0.53
SHKBP1-204ENST00000594862 POLR2EP19388 210 aaKnown RBP18.37■□□□□ 0.53
SHKBP1-204ENST00000594862 HOXD12P35452 270 aa18.37■□□□□ 0.53
SHKBP1-204ENST00000594862 IL12RB1P42701 662 aa18.37■□□□□ 0.53
SHKBP1-204ENST00000594862 CREB5Q02930 508 aa18.37■□□□□ 0.53
SHKBP1-204ENST00000594862 TAF5Q15542 800 aa18.37■□□□□ 0.53
SHKBP1-204ENST00000594862 PLA2G2CQ5R387 149 aa18.37■□□□□ 0.53
SHKBP1-204ENST00000594862 TAF3Q5VWG9 929 aa18.37■□□□□ 0.53
SHKBP1-204ENST00000594862 CAVIN1Q6NZI2 390 aaKnown RBP18.37■□□□□ 0.53
SHKBP1-204ENST00000594862 SND1Q7KZF4 910 aaKnown RBP eCLIP18.37■□□□□ 0.53
SHKBP1-204ENST00000594862 RTKNQ9BST9 563 aa18.37■□□□□ 0.53
SHKBP1-204ENST00000594862 NUCKS1Q9H1E3 243 aaKnown RBP18.37■□□□□ 0.53
SHKBP1-204ENST00000594862 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP18.37■□□□□ 0.53
SHKBP1-204ENST00000594862 NOCTQ9UK39 431 aaKnown RBP18.37■□□□□ 0.53
SHKBP1-204ENST00000594862 GOLGA6L7A0A1B0GV03 622 aa18.36■□□□□ 0.53
SHKBP1-204ENST00000594862 GRAP2O75791 330 aa18.36■□□□□ 0.53
SHKBP1-204ENST00000594862 TACR2P21452 398 aa18.36■□□□□ 0.53
SHKBP1-204ENST00000594862 BCKDHBP21953 392 aa18.36■□□□□ 0.53
SHKBP1-204ENST00000594862 DHPSP49366 369 aaPredicted RBP18.36■□□□□ 0.53
SHKBP1-204ENST00000594862 SGSHP51688 502 aa18.36■□□□□ 0.53
SHKBP1-204ENST00000594862 NOMO3P69849 1222 aa18.36■□□□□ 0.53
SHKBP1-204ENST00000594862 SLC12A1Q13621 1099 aa18.36■□□□□ 0.53
SHKBP1-204ENST00000594862 RSPO4Q2I0M5 234 aaPredicted RBP18.36■□□□□ 0.53
SHKBP1-204ENST00000594862 KLHL40Q2TBA0 621 aa18.36■□□□□ 0.53
SHKBP1-204ENST00000594862 FUT11Q495W5 492 aa18.36■□□□□ 0.53
SHKBP1-204ENST00000594862 FILIP1LQ4L180 1135 aa18.36■□□□□ 0.53
SHKBP1-204ENST00000594862 AASDHQ4L235 1098 aaPredicted RBP18.36■□□□□ 0.53
SHKBP1-204ENST00000594862 FNDC3BQ53EP0 1204 aaKnown RBP18.36■□□□□ 0.53
SHKBP1-204ENST00000594862 BRMS1LQ5PSV4 323 aa18.36■□□□□ 0.53
SHKBP1-204ENST00000594862 FAM102AQ5T9C2 384 aaPredicted RBP18.36■□□□□ 0.53
SHKBP1-204ENST00000594862 RAP1GAP2Q684P5 730 aa18.36■□□□□ 0.53
SHKBP1-204ENST00000594862 MBLAC2Q68D91 279 aa18.36■□□□□ 0.53
SHKBP1-204ENST00000594862 KIAA1211LQ6NV74 962 aa18.36■□□□□ 0.53
SHKBP1-204ENST00000594862 ARCQ7LC44 396 aa18.36■□□□□ 0.53
SHKBP1-204ENST00000594862 RABEPKQ7Z6M1 372 aa18.36■□□□□ 0.53
SHKBP1-204ENST00000594862 ADIPOR2Q86V24 386 aa18.36■□□□□ 0.53
SHKBP1-204ENST00000594862 LGI2Q8N0V4 545 aa18.36■□□□□ 0.53
SHKBP1-204ENST00000594862 KDM1BQ8NB78 822 aa18.36■□□□□ 0.53
SHKBP1-204ENST00000594862 MRGPRX1Q96LB2 322 aa18.36■□□□□ 0.53
SHKBP1-204ENST00000594862 PPP1R9BQ96SB3 815 aa18.36■□□□□ 0.53
SHKBP1-204ENST00000594862 PRDM16Q9HAZ2 1276 aa18.36■□□□□ 0.53
SHKBP1-204ENST00000594862 NLRC4Q9NPP4 1024 aa18.36■□□□□ 0.53
SHKBP1-204ENST00000594862 STIM2Q9P246 746 aa18.36■□□□□ 0.53
SHKBP1-204ENST00000594862 INVSQ9Y283 1065 aa18.36■□□□□ 0.53
SHKBP1-204ENST00000594862 RAD54BQ9Y620 910 aa18.36■□□□□ 0.53
SHKBP1-204ENST00000594862 DYNC1LI1Q9Y6G9 523 aaKnown RBP18.36■□□□□ 0.53
SHKBP1-204ENST00000594862 CKAP5Q14008 2032 aa18.35■□□□□ 0.53
SHKBP1-204ENST00000594862 MUC22E2RYF6 1773 aaPredicted RBP18.35■□□□□ 0.53
SHKBP1-204ENST00000594862 MED19A0JLT2 244 aaPredicted RBP18.35■□□□□ 0.53
SHKBP1-204ENST00000594862 M0QYT0 321 aa18.35■□□□□ 0.53
SHKBP1-204ENST00000594862 CAVIN2O95810 425 aa18.35■□□□□ 0.53
SHKBP1-204ENST00000594862 EPHX1P07099 455 aa18.35■□□□□ 0.53
SHKBP1-204ENST00000594862 MMEP08473 750 aa18.35■□□□□ 0.53
SHKBP1-204ENST00000594862 LIMK1P53667 647 aa18.35■□□□□ 0.53
SHKBP1-204ENST00000594862 ST8SIA6P61647 398 aa18.35■□□□□ 0.53
SHKBP1-204ENST00000594862 RPS24P62847 133 aaKnown RBP18.35■□□□□ 0.53
SHKBP1-204ENST00000594862 TMEM215Q68D42 235 aa18.35■□□□□ 0.53
SHKBP1-204ENST00000594862 KIAA1324Q6UXG2 1013 aaKnown RBP18.35■□□□□ 0.53
SHKBP1-204ENST00000594862 XYLT1Q86Y38 959 aa18.35■□□□□ 0.53
SHKBP1-204ENST00000594862 CARNMT1Q8N4J0 409 aa18.35■□□□□ 0.53
SHKBP1-204ENST00000594862 RLN3Q8WXF3 142 aa18.35■□□□□ 0.53
SHKBP1-204ENST00000594862 PGAP3Q96FM1 320 aaPredicted RBP18.35■□□□□ 0.53
SHKBP1-204ENST00000594862 NPY6RQ99463 290 aa18.35■□□□□ 0.53
SHKBP1-204ENST00000594862 KIAA1522Q9P206 1035 aaPredicted RBP18.35■□□□□ 0.53
SHKBP1-204ENST00000594862 THADAQ6YHU6 1953 aa18.34■□□□□ 0.53
SHKBP1-204ENST00000594862 SYNJ2BP-COX16A0A087WUM0 186 aa18.34■□□□□ 0.53
SHKBP1-204ENST00000594862 A0A1B0GVM2 712 aa18.34■□□□□ 0.53
SHKBP1-204ENST00000594862 TCAF2A6NFQ2 919 aa18.34■□□□□ 0.53
SHKBP1-204ENST00000594862 H0Y626 953 aa18.34■□□□□ 0.53
SHKBP1-204ENST00000594862 PRKCHP24723 683 aa18.34■□□□□ 0.53
SHKBP1-204ENST00000594862 OXTRP30559 389 aa18.34■□□□□ 0.53
SHKBP1-204ENST00000594862 KLK7P49862 253 aa18.34■□□□□ 0.53
SHKBP1-204ENST00000594862 ZNF165P49910 485 aa18.34■□□□□ 0.53
SHKBP1-204ENST00000594862 TPM4P67936 248 aa18.34■□□□□ 0.53
SHKBP1-204ENST00000594862 PITX1P78337 314 aaPredicted RBP18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms