RNA–Protein interactions for RNA: ENST00000589823.6

VMP1-210, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-210ENST00000589823 DUSP12Q9UNI6 340 aa14.08□□□□□ -0.16
VMP1-210ENST00000589823 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.08□□□□□ -0.16
VMP1-210ENST00000589823 SNX10Q9Y5X0 201 aa14.08□□□□□ -0.16
VMP1-210ENST00000589823 E9PAM4 449 aa14.07□□□□□ -0.16
VMP1-210ENST00000589823 NEDD8-MDP1E9PL57 170 aa14.07□□□□□ -0.16
VMP1-210ENST00000589823 PSTPIP1O43586 416 aa14.07□□□□□ -0.16
VMP1-210ENST00000589823 NARSO43776 548 aaKnown RBP14.07□□□□□ -0.16
VMP1-210ENST00000589823 CREB3O43889 395 aa14.07□□□□□ -0.16
VMP1-210ENST00000589823 KIF5CO60282 957 aa14.07□□□□□ -0.16
VMP1-210ENST00000589823 TBL1XO60907 577 aa14.07□□□□□ -0.16
VMP1-210ENST00000589823 SRGAP2O75044 1071 aa14.07□□□□□ -0.16
VMP1-210ENST00000589823 FTCDO95954 541 aa14.07□□□□□ -0.16
VMP1-210ENST00000589823 CYP17A1P05093 508 aa14.07□□□□□ -0.16
VMP1-210ENST00000589823 MSNP26038 577 aaKnown RBP14.07□□□□□ -0.16
VMP1-210ENST00000589823 L1CAMP32004 1257 aa14.07□□□□□ -0.16
VMP1-210ENST00000589823 ZNF135P52742 658 aaPredicted RBP14.07□□□□□ -0.16
VMP1-210ENST00000589823 NRG1Q02297 640 aaPredicted RBP14.07□□□□□ -0.16
VMP1-210ENST00000589823 GAD2Q05329 585 aa14.07□□□□□ -0.16
VMP1-210ENST00000589823 KRT81Q14533 505 aa14.07□□□□□ -0.16
VMP1-210ENST00000589823 TTC39BQ5VTQ0 682 aaPredicted RBP14.07□□□□□ -0.16
VMP1-210ENST00000589823 TXNRD3NBQ6F5E7 133 aa14.07□□□□□ -0.16
VMP1-210ENST00000589823 FBXL22Q6P050 247 aa14.07□□□□□ -0.16
VMP1-210ENST00000589823 RHBDF2Q6PJF5 856 aa14.07□□□□□ -0.16
VMP1-210ENST00000589823 TMEM25Q86YD3 366 aa14.07□□□□□ -0.16
VMP1-210ENST00000589823 CCDC117Q8IWD4 279 aaPredicted RBP14.07□□□□□ -0.16
VMP1-210ENST00000589823 PYROXD2Q8N2H3 581 aa14.07□□□□□ -0.16
VMP1-210ENST00000589823 HJURPQ8NCD3 748 aaPredicted RBP14.07□□□□□ -0.16
VMP1-210ENST00000589823 TTC8Q8TAM2 541 aa14.07□□□□□ -0.16
VMP1-210ENST00000589823 UBE2Q2Q8WVN8 375 aa14.07□□□□□ -0.16
VMP1-210ENST00000589823 TBC1D31Q96DN5 1066 aa14.07□□□□□ -0.16
VMP1-210ENST00000589823 UHRF1Q96T88 793 aaPredicted RBP14.07□□□□□ -0.16
VMP1-210ENST00000589823 SLC2A4RGQ9NR83 387 aa14.07□□□□□ -0.16
VMP1-210ENST00000589823 DDX56Q9NY93 547 aaKnown RBP14.07□□□□□ -0.16
VMP1-210ENST00000589823 GTSE1Q9NYZ3 720 aa14.07□□□□□ -0.16
VMP1-210ENST00000589823 KIF26AQ9ULI4 1882 aaPredicted RBP14.06□□□□□ -0.16
VMP1-210ENST00000589823 TCF20Q9UGU0 1960 aaKnown RBP14.06□□□□□ -0.16
VMP1-210ENST00000589823 CCDC66A2RUB6 948 aa14.06□□□□□ -0.16
VMP1-210ENST00000589823 USP27XA6NNY8 438 aa14.06□□□□□ -0.16
VMP1-210ENST00000589823 ARNTLO00327 626 aa14.06□□□□□ -0.16
VMP1-210ENST00000589823 GFRA2O00451 464 aa14.06□□□□□ -0.16
VMP1-210ENST00000589823 HOXC11O43248 304 aaPredicted RBP14.06□□□□□ -0.16
VMP1-210ENST00000589823 HTR7P34969 479 aa14.06□□□□□ -0.16
VMP1-210ENST00000589823 ARL4AP40617 200 aa14.06□□□□□ -0.16
VMP1-210ENST00000589823 CDH6P55285 790 aa14.06□□□□□ -0.16
VMP1-210ENST00000589823 AMPD2Q01433 879 aa14.06□□□□□ -0.16
VMP1-210ENST00000589823 DPYSL2Q16555 572 aa14.06□□□□□ -0.16
VMP1-210ENST00000589823 CA9Q16790 459 aa14.06□□□□□ -0.16
VMP1-210ENST00000589823 PPP6R3Q5H9R7 873 aaPredicted RBP14.06□□□□□ -0.16
VMP1-210ENST00000589823 MPP7Q5T2T1 576 aa14.06□□□□□ -0.16
VMP1-210ENST00000589823 RWDD4Q6NW29 188 aaKnown RBP14.06□□□□□ -0.16
VMP1-210ENST00000589823 C14orf80Q86SX3 495 aa14.06□□□□□ -0.16
VMP1-210ENST00000589823 NT5DC3Q86UY8 548 aa14.06□□□□□ -0.16
VMP1-210ENST00000589823 MAP7D3Q8IWC1 876 aa14.06□□□□□ -0.16
VMP1-210ENST00000589823 KCTD6Q8NC69 237 aa14.06□□□□□ -0.16
VMP1-210ENST00000589823 BHMTQ93088 406 aa14.06□□□□□ -0.16
VMP1-210ENST00000589823 PRICKLE1Q96MT3 831 aaPredicted RBP14.06□□□□□ -0.16
VMP1-210ENST00000589823 XPO6Q96QU8 1125 aaKnown RBP14.06□□□□□ -0.16
VMP1-210ENST00000589823 KCTD15Q96SI1 283 aaPredicted RBP14.06□□□□□ -0.16
VMP1-210ENST00000589823 KCND1Q9NSA2 647 aa14.06□□□□□ -0.16
VMP1-210ENST00000589823 MARK1Q9P0L2 795 aa14.06□□□□□ -0.16
VMP1-210ENST00000589823 STIM2Q9P246 746 aa14.06□□□□□ -0.16
VMP1-210ENST00000589823 PPARGC1AQ9UBK2 798 aaKnown RBP14.06□□□□□ -0.16
VMP1-210ENST00000589823 ZKSCAN5Q9Y2L8 839 aa14.06□□□□□ -0.16
VMP1-210ENST00000589823 UNC80Q8N2C7 3258 aa14.05□□□□□ -0.16
VMP1-210ENST00000589823 A0A1B0GVM2 712 aa14.05□□□□□ -0.16
VMP1-210ENST00000589823 TCAF2A6NFQ2 919 aa14.05□□□□□ -0.16
VMP1-210ENST00000589823 DRGXA6NNA5 263 aa14.05□□□□□ -0.16
VMP1-210ENST00000589823 MIF4GDA9UHW6 222 aaKnown RBP14.05□□□□□ -0.16
VMP1-210ENST00000589823 FAM72CH0Y354 149 aa14.05□□□□□ -0.16
VMP1-210ENST00000589823 H3BRJ5 948 aa14.05□□□□□ -0.16
VMP1-210ENST00000589823 EEF2KO00418 725 aaKnown RBP14.05□□□□□ -0.16
VMP1-210ENST00000589823 DAPK3O43293 454 aa14.05□□□□□ -0.16
VMP1-210ENST00000589823 LRIG2O94898 1065 aa14.05□□□□□ -0.16
VMP1-210ENST00000589823 PENKP01210 267 aaPredicted RBP14.05□□□□□ -0.16
VMP1-210ENST00000589823 KRT1P04264 644 aa14.05□□□□□ -0.16
VMP1-210ENST00000589823 TYRP14679 529 aa14.05□□□□□ -0.16
VMP1-210ENST00000589823 CTNNA2P26232 953 aa14.05□□□□□ -0.16
VMP1-210ENST00000589823 EPHB2P29323 1055 aa14.05□□□□□ -0.16
VMP1-210ENST00000589823 CTNNA1P35221 906 aaKnown RBP14.05□□□□□ -0.16
VMP1-210ENST00000589823 SGSHP51688 502 aa14.05□□□□□ -0.16
VMP1-210ENST00000589823 TPI1P60174 286 aa14.05□□□□□ -0.16
VMP1-210ENST00000589823 RPS24P62847 133 aaKnown RBP14.05□□□□□ -0.16
VMP1-210ENST00000589823 PDK2Q15119 407 aa14.05□□□□□ -0.16
VMP1-210ENST00000589823 ATP13A4Q4VNC1 1196 aa14.05□□□□□ -0.16
VMP1-210ENST00000589823 FAM72AQ5TYM5 149 aa14.05□□□□□ -0.16
VMP1-210ENST00000589823 MANEALQ5VSG8 457 aa14.05□□□□□ -0.16
VMP1-210ENST00000589823 FYB2Q5VWT5 728 aa14.05□□□□□ -0.16
VMP1-210ENST00000589823 FAM72DQ6L9T8 149 aa14.05□□□□□ -0.16
VMP1-210ENST00000589823 FAM72BQ86X60 149 aa14.05□□□□□ -0.16
VMP1-210ENST00000589823 UBALD2Q8IYN6 164 aa14.05□□□□□ -0.16
VMP1-210ENST00000589823 ZNF683Q8IZ20 524 aa14.05□□□□□ -0.16
VMP1-210ENST00000589823 CFAP52Q8N1V2 620 aa14.05□□□□□ -0.16
VMP1-210ENST00000589823 UBL4BQ8N7F7 174 aa14.05□□□□□ -0.16
VMP1-210ENST00000589823 ZNF557Q8N988 423 aaPredicted RBP14.05□□□□□ -0.16
VMP1-210ENST00000589823 CD101Q93033 1021 aa14.05□□□□□ -0.16
VMP1-210ENST00000589823 IGSF8Q969P0 613 aa14.05□□□□□ -0.16
VMP1-210ENST00000589823 EXOC4Q96A65 974 aa14.05□□□□□ -0.16
VMP1-210ENST00000589823 MYEOVQ96EZ4 313 aa14.05□□□□□ -0.16
VMP1-210ENST00000589823 NECAB3Q96P71 396 aaPredicted RBP14.05□□□□□ -0.16
VMP1-210ENST00000589823 MAGEB5Q9BZ81 275 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms