RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	NNMT	P40261	264 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	GDF5	P43026	501 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	GSTM5	P46439	218 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	RARS	P54136	660 aa	Known RBP	5.27	□□□□□ -1.57
SS18-223	ENST00000583595	RPL15	P61313	204 aa	Known RBP	5.27	□□□□□ -1.57
SS18-223	ENST00000583595	RBM6	P78332	1123 aa	Known RBP	5.27	□□□□□ -1.57
SS18-223	ENST00000583595	MC2R	Q01718	297 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	DMTN	Q08495	405 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	TBL3	Q12788	808 aa	Known RBP	5.27	□□□□□ -1.57
SS18-223	ENST00000583595	FOXL1	Q12952	345 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	MTAP	Q13126	283 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	ACOX1	Q15067	660 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	AAK1	Q2M2I8	961 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	TMEM266	Q2M3C6	531 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	TBRG1	Q3YBR2	411 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	CCDC92	Q53HC0	331 aa	Predicted RBP	5.27	□□□□□ -1.57
SS18-223	ENST00000583595	CCDC144NL	Q6NUI1	221 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	DENND1B	Q6P3S1	775 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	MAMDC4	Q6UXC1	1216 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	MFSD6	Q6ZSS7	791 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	KRT27	Q7Z3Y8	459 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	ADGRG6	Q86SQ4	1221 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	FAM83A	Q86UY5	434 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	RAB11FIP4	Q86YS3	637 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	SLC15A3	Q8IY34	581 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	GPR135	Q8IZ08	494 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	PTGR2	Q8N8N7	351 aa	Predicted RBP	5.27	□□□□□ -1.57
SS18-223	ENST00000583595	ATRIP	Q8WXE1	791 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	SECISBP2L	Q93073	1101 aa	Known RBP	5.27	□□□□□ -1.57
SS18-223	ENST00000583595	FAM89A	Q96GI7	184 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	MASTL	Q96GX5	879 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	FEM1C	Q96JP0	617 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	ZNF668	Q96K58	619 aa	Predicted RBP	5.27	□□□□□ -1.57
SS18-223	ENST00000583595	NR1H4	Q96RI1	486 aa	Predicted RBP	5.27	□□□□□ -1.57
SS18-223	ENST00000583595	C17orf80	Q9BSJ5	609 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	SCAND2P	Q9GZW5	306 aa	Predicted RBP	5.27	□□□□□ -1.57
SS18-223	ENST00000583595	MUC13	Q9H3R2	512 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	GRPEL1	Q9HAV7	217 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	MSL2	Q9HCI7	577 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	PDE7B	Q9NP56	450 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	TMLHE	Q9NVH6	421 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	SARDH	Q9UL12	918 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	ENTPD2	Q9Y5L3	495 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	SNX14	Q9Y5W7	946 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	SNX5	Q9Y5X3	404 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	TNIK	Q9UKE5	1360 aa		5.27	□□□□□ -1.57
SS18-223	ENST00000583595	SOS1	Q07889	1333 aa	Predicted RBP	5.26	□□□□□ -1.57
SS18-223	ENST00000583595	CCDC195	A0A1B0GUA6	201 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595		A0A1W2PQ09	198 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595		A0A1W2PRX2	142 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	TNFSF14	O43557	240 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	SUN1	O94901	812 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	VNN1	O95497	513 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	LYL1	P12980	280 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	MUT	P22033	750 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	RBL1	P28749	1068 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	MSX2	P35548	267 aa	Predicted RBP	5.26	□□□□□ -1.57
SS18-223	ENST00000583595	EIF2D	P41214	584 aa	Known RBP	5.26	□□□□□ -1.57
SS18-223	ENST00000583595	PNPLA4	P41247	253 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	UFM1	P61960	85 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	EPS8	Q12929	822 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	PPP2R5C	Q13362	524 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	BFSP2	Q13515	415 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	NAA25	Q14CX7	972 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	ASIC2	Q16515	512 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	USP39	Q53GS9	565 aa	Known RBP	5.26	□□□□□ -1.57
SS18-223	ENST00000583595	ZNF766	Q5HY98	468 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	C1orf141	Q5JVX7	400 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	ZNF362	Q5T0B9	420 aa	Predicted RBP	5.26	□□□□□ -1.57
SS18-223	ENST00000583595	CERCAM	Q5T4B2	595 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	DEPDC1	Q5TB30	811 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	METRNL	Q641Q3	311 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	GPR139	Q6DWJ6	353 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	RNF207	Q6ZRF8	634 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	DOK3	Q7L591	496 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	PRPF39	Q86UA1	669 aa	Known RBP	5.26	□□□□□ -1.57
SS18-223	ENST00000583595	SYT12	Q8IV01	421 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	SCML4	Q8N228	414 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	SHCBP1	Q8NEM2	672 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595		Q8NFD4	153 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	GOT1L1	Q8NHS2	421 aa	Predicted RBP	5.26	□□□□□ -1.57
SS18-223	ENST00000583595	CLEC4C	Q8WTT0	213 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	EXTL1	Q92935	676 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	PIGS	Q96S52	555 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	PNKP	Q96T60	521 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	EIF3C	Q99613	913 aa	Known RBP	5.26	□□□□□ -1.57
SS18-223	ENST00000583595	HTATIP2	Q9BUP3	242 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	NDST4	Q9H3R1	872 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	ERVK-5	Q9HDB9	667 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	SERTAD3	Q9UJW9	196 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	RIMKLB	Q9ULI2	386 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	IFT140	Q96RY7	1462 aa		5.26	□□□□□ -1.57
SS18-223	ENST00000583595	TBC1D3D	A0A087WVF3	549 aa		5.25	□□□□□ -1.57
SS18-223	ENST00000583595	TBC1D3I	A0A087WXS9	549 aa		5.25	□□□□□ -1.57
SS18-223	ENST00000583595	TBC1D3E	A0A087X179	549 aa		5.25	□□□□□ -1.57
SS18-223	ENST00000583595	TBC1D3K	A0A087X1G2	549 aa		5.25	□□□□□ -1.57
SS18-223	ENST00000583595	PMS2P1	A4D2B8	440 aa		5.25	□□□□□ -1.57
SS18-223	ENST00000583595	TBC1D3B	A6NDS4	549 aa		5.25	□□□□□ -1.57
SS18-223	ENST00000583595	TBC1D3F	A6NER0	549 aa	Predicted RBP	5.25	□□□□□ -1.57
SS18-223	ENST00000583595	ZAR1L	A6NP61	321 aa		5.25	□□□□□ -1.57

Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms