RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 LRRC4CQ9HCJ2 640 aa10.79□□□□□ -0.68
SS18-221ENST00000582448 PRMT8Q9NR22 394 aaPredicted RBP10.79□□□□□ -0.68
SS18-221ENST00000582448 GDE1Q9NZC3 331 aa10.79□□□□□ -0.68
SS18-221ENST00000582448 ZC3H7BQ9UGR2 993 aaKnown RBP10.79□□□□□ -0.68
SS18-221ENST00000582448 PCOLCE2Q9UKZ9 415 aa10.79□□□□□ -0.68
SS18-221ENST00000582448 INTUQ9ULD6 942 aa10.79□□□□□ -0.68
SS18-221ENST00000582448 REXO2Q9Y3B8 237 aaKnown RBP10.79□□□□□ -0.68
SS18-221ENST00000582448 MIA3Q5JRA6 1907 aa10.79□□□□□ -0.68
SS18-221ENST00000582448 CACNA1AO00555 2505 aa10.79□□□□□ -0.68
SS18-221ENST00000582448 FANCMQ8IYD8 2048 aa10.79□□□□□ -0.68
SS18-221ENST00000582448 A0A087X0T9 212 aa10.78□□□□□ -0.68
SS18-221ENST00000582448 MACROD2A1Z1Q3 448 aa10.78□□□□□ -0.68
SS18-221ENST00000582448 EDN1P05305 212 aa10.78□□□□□ -0.68
SS18-221ENST00000582448 H2AFZP0C0S5 128 aa10.78□□□□□ -0.68
SS18-221ENST00000582448 FAM228BP0C875 321 aa10.78□□□□□ -0.68
SS18-221ENST00000582448 P4HA1P13674 534 aa10.78□□□□□ -0.68
SS18-221ENST00000582448 GDI1P31150 447 aa10.78□□□□□ -0.68
SS18-221ENST00000582448 TNFSF9P41273 254 aa10.78□□□□□ -0.68
SS18-221ENST00000582448 RING1Q06587 406 aa10.78□□□□□ -0.68
SS18-221ENST00000582448 SRSF5Q13243 272 aaKnown RBP10.78□□□□□ -0.68
SS18-221ENST00000582448 SIM2Q14190 667 aaPredicted RBP10.78□□□□□ -0.68
SS18-221ENST00000582448 LRRC14Q15048 493 aa10.78□□□□□ -0.68
SS18-221ENST00000582448 FAM78AQ5JUQ0 283 aa10.78□□□□□ -0.68
SS18-221ENST00000582448 EEF1DP3Q658K8 133 aa10.78□□□□□ -0.68
SS18-221ENST00000582448 HEATR6Q6AI08 1181 aaKnown RBP10.78□□□□□ -0.68
SS18-221ENST00000582448 H2AFVQ71UI9 128 aa10.78□□□□□ -0.68
SS18-221ENST00000582448 TRAPPC11Q7Z392 1133 aa10.78□□□□□ -0.68
SS18-221ENST00000582448 ZNF571Q7Z3V5 609 aaPredicted RBP10.78□□□□□ -0.68
SS18-221ENST00000582448 UBE3DQ7Z6J8 389 aa10.78□□□□□ -0.68
SS18-221ENST00000582448 NT5DC4Q86YG4 428 aa10.78□□□□□ -0.68
SS18-221ENST00000582448 FAM71AQ8IYT1 594 aa10.78□□□□□ -0.68
SS18-221ENST00000582448 SLC35F6Q8N357 371 aa10.78□□□□□ -0.68
SS18-221ENST00000582448 MNS1Q8NEH6 495 aa10.78□□□□□ -0.68
SS18-221ENST00000582448 CTNNBL1Q8WYA6 563 aaPredicted RBP10.78□□□□□ -0.68
SS18-221ENST00000582448 SHC3Q92529 594 aa10.78□□□□□ -0.68
SS18-221ENST00000582448 NELL1Q92832 810 aa10.78□□□□□ -0.68
SS18-221ENST00000582448 SEMA4DQ92854 862 aa10.78□□□□□ -0.68
SS18-221ENST00000582448 AGPAT1Q99943 283 aa10.78□□□□□ -0.68
SS18-221ENST00000582448 FAM126AQ9BYI3 521 aaPredicted RBP10.78□□□□□ -0.68
SS18-221ENST00000582448 PDCL3Q9H2J4 239 aa10.78□□□□□ -0.68
SS18-221ENST00000582448 CYP4F11Q9HBI6 524 aa10.78□□□□□ -0.68
SS18-221ENST00000582448 MTRRQ9UBK8 725 aa10.78□□□□□ -0.68
SS18-221ENST00000582448 CYP8B1Q9UNU6 501 aa10.78□□□□□ -0.68
SS18-221ENST00000582448 ATP8B3O60423 1300 aa10.78□□□□□ -0.68
SS18-221ENST00000582448 NCOR2Q9Y618 2525 aa10.78□□□□□ -0.68
SS18-221ENST00000582448 ZNF292O60281 2723 aa10.78□□□□□ -0.68
SS18-221ENST00000582448 UQCRHLA0A096LP55 91 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 SHISA7A6NL88 538 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 CHURC1-FNTBB4DL54 471 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 ABLIM1O14639 778 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 ZNF197O14709 1029 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 TRAPPC3O43617 180 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 FAM189A1O60320 539 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 LEFTY1O75610 366 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 SLU7O95391 586 aaKnown RBP10.77□□□□□ -0.69
SS18-221ENST00000582448 WNT11O96014 354 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 UQCRHP07919 91 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 RETP07949 1114 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 FAM87AP0C7U9 286 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 MYL4P12829 197 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 GJA1P17302 382 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 VIPR2P41587 438 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 CXCL12P48061 93 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 FNTBP49356 437 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 CCR3P51677 355 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 TUBB4BP68371 445 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 SATB1Q01826 763 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 DMWDQ09019 674 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 CUL2Q13617 745 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 ZNF699Q32M78 642 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 CYP4A22Q5TCH4 519 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 LAIR1Q6GTX8 287 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 PPP1R2P3Q6NXS1 205 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 ANKS3Q6ZW76 656 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 PDZD4Q76G19 769 aaPredicted RBP10.77□□□□□ -0.69
SS18-221ENST00000582448 ZNF677Q86XU0 584 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 NETO1Q8TDF5 533 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 DNASE1L2Q92874 299 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 ZSWIM3Q96MP5 696 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 PSMG3-AS1Q96PY0 264 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 WDR24Q96S15 920 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 ZNF334Q9HCZ1 680 aaPredicted RBP10.77□□□□□ -0.69
SS18-221ENST00000582448 SEMA4GQ9NTN9 838 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 AJAP1Q9UKB5 411 aaPredicted RBP10.77□□□□□ -0.69
SS18-221ENST00000582448 PIAS3Q9Y6X2 628 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 FRYLO94915 3013 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 CEP250Q9BV73 2442 aa10.77□□□□□ -0.69
SS18-221ENST00000582448 ANO9A1A5B4 782 aa10.76□□□□□ -0.69
SS18-221ENST00000582448 WDR27A2RRH5 827 aa10.76□□□□□ -0.69
SS18-221ENST00000582448 BTNL10A8MVZ5 291 aa10.76□□□□□ -0.69
SS18-221ENST00000582448 SLC30A4O14863 429 aa10.76□□□□□ -0.69
SS18-221ENST00000582448 ZNF263O14978 683 aa10.76□□□□□ -0.69
SS18-221ENST00000582448 SEC24AO95486 1093 aa10.76□□□□□ -0.69
SS18-221ENST00000582448 KRT19P08727 400 aa10.76□□□□□ -0.69
SS18-221ENST00000582448 POU2F2P09086 479 aa10.76□□□□□ -0.69
SS18-221ENST00000582448 PNMA6AP0CW24 399 aaPredicted RBP10.76□□□□□ -0.69
SS18-221ENST00000582448 CXCL8P10145 99 aa10.76□□□□□ -0.69
SS18-221ENST00000582448 ATICP31939 592 aa10.76□□□□□ -0.69
SS18-221ENST00000582448 CCR2P41597 374 aa10.76□□□□□ -0.69
SS18-221ENST00000582448 NOP2P46087 812 aaKnown RBP10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms