RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 SGPL1O95470 568 aa7.16□□□□□ -1.26
SS18-214ENST00000580003 TBC1D3HP0C7X1 549 aa7.16□□□□□ -1.26
SS18-214ENST00000580003 SERPINF1P36955 418 aa7.16□□□□□ -1.26
SS18-214ENST00000580003 SOX2P48431 317 aa7.16□□□□□ -1.26
SS18-214ENST00000580003 SLC37A1P57057 533 aa7.16□□□□□ -1.26
SS18-214ENST00000580003 TAS2R50P59544 299 aa7.16□□□□□ -1.26
SS18-214ENST00000580003 RPL15P61313 204 aaKnown RBP7.16□□□□□ -1.26
SS18-214ENST00000580003 RNASELQ05823 741 aaKnown RBP7.16□□□□□ -1.26
SS18-214ENST00000580003 GALNT1Q10472 559 aaPredicted RBP7.16□□□□□ -1.26
SS18-214ENST00000580003 SF3A3Q12874 501 aaKnown RBP eCLIP7.16□□□□□ -1.26
SS18-214ENST00000580003 RBMS2Q15434 407 aaKnown RBP7.16□□□□□ -1.26
SS18-214ENST00000580003 PAPD7Q5XG87 772 aaKnown RBP7.16□□□□□ -1.26
SS18-214ENST00000580003 TBC1D3GQ6DHY5 549 aa7.16□□□□□ -1.26
SS18-214ENST00000580003 TBC1D3CQ6IPX1 549 aa7.16□□□□□ -1.26
SS18-214ENST00000580003 KLHL17Q6TDP4 642 aa7.16□□□□□ -1.26
SS18-214ENST00000580003 TBC1D3Q8IZP1 549 aaPredicted RBP7.16□□□□□ -1.26
SS18-214ENST00000580003 LTV1Q96GA3 475 aaPredicted RBP7.16□□□□□ -1.26
SS18-214ENST00000580003 BRD8Q9H0E9 1235 aa7.16□□□□□ -1.26
SS18-214ENST00000580003 TMEM45AQ9NWC5 275 aa7.16□□□□□ -1.26
SS18-214ENST00000580003 DACT1Q9NYF0 836 aa7.16□□□□□ -1.26
SS18-214ENST00000580003 ELOVL5Q9NYP7 299 aa7.16□□□□□ -1.26
SS18-214ENST00000580003 TRPC5Q9UL62 973 aaPredicted RBP7.16□□□□□ -1.26
SS18-214ENST00000580003 SLC12A4Q9UP95 1085 aa7.16□□□□□ -1.26
SS18-214ENST00000580003 CNTN6Q9UQ52 1028 aa7.16□□□□□ -1.26
SS18-214ENST00000580003 ZNF521Q96K83 1311 aa7.16□□□□□ -1.26
SS18-214ENST00000580003 ZMYM2Q9UBW7 1377 aa7.16□□□□□ -1.26
SS18-214ENST00000580003 TRIM38O00635 465 aa7.15□□□□□ -1.26
SS18-214ENST00000580003 ACTL6BO94805 426 aa7.15□□□□□ -1.26
SS18-214ENST00000580003 KAT7O95251 611 aa7.15□□□□□ -1.26
SS18-214ENST00000580003 CSTBP04080 98 aaKnown RBP7.15□□□□□ -1.26
SS18-214ENST00000580003 CYP19A1P11511 503 aaPredicted RBP7.15□□□□□ -1.26
SS18-214ENST00000580003 GYS1P13807 737 aa7.15□□□□□ -1.26
SS18-214ENST00000580003 RBM6P78332 1123 aaKnown RBP7.15□□□□□ -1.26
SS18-214ENST00000580003 CCDC38Q502W7 563 aa7.15□□□□□ -1.26
SS18-214ENST00000580003 LIPMQ5VYY2 423 aa7.15□□□□□ -1.26
SS18-214ENST00000580003 TMEM88Q6PEY1 159 aa7.15□□□□□ -1.26
SS18-214ENST00000580003 CCDC117Q8IWD4 279 aaPredicted RBP7.15□□□□□ -1.26
SS18-214ENST00000580003 ADGRF4Q8IZF3 695 aa7.15□□□□□ -1.26
SS18-214ENST00000580003 ENAHQ8N8S7 591 aaPredicted RBP7.15□□□□□ -1.26
SS18-214ENST00000580003 SFXN1Q9H9B4 322 aa7.15□□□□□ -1.26
SS18-214ENST00000580003 LIN7CQ9NUP9 197 aaKnown RBP7.15□□□□□ -1.26
SS18-214ENST00000580003 F8W810 466 aa7.14□□□□□ -1.27
SS18-214ENST00000580003 CNTN5O94779 1100 aa7.14□□□□□ -1.27
SS18-214ENST00000580003 CYP3A4P08684 503 aa7.14□□□□□ -1.27
SS18-214ENST00000580003 RFPL3SP0C7P2 107 aa7.14□□□□□ -1.27
SS18-214ENST00000580003 BIRC2Q13490 618 aa7.14□□□□□ -1.27
SS18-214ENST00000580003 TRIM14Q14142 442 aa7.14□□□□□ -1.27
SS18-214ENST00000580003 TRIM60Q495X7 471 aa7.14□□□□□ -1.27
SS18-214ENST00000580003 NFRKBQ6P4R8 1299 aa7.14□□□□□ -1.27
SS18-214ENST00000580003 RAB11FIP2Q7L804 512 aa7.14□□□□□ -1.27
SS18-214ENST00000580003 SLC44A2Q8IWA5 706 aaPredicted RBP7.14□□□□□ -1.27
SS18-214ENST00000580003 FAM47BQ8NA70 645 aa7.14□□□□□ -1.27
SS18-214ENST00000580003 SCARB1Q8WTV0 552 aa7.14□□□□□ -1.27
SS18-214ENST00000580003 RPS6KC1Q96S38 1066 aa7.14□□□□□ -1.27
SS18-214ENST00000580003 MECRQ9BV79 373 aa7.14□□□□□ -1.27
SS18-214ENST00000580003 TMEM120AQ9BXJ8 343 aa7.14□□□□□ -1.27
SS18-214ENST00000580003 MOV10Q9HCE1 1003 aaKnown RBP7.14□□□□□ -1.27
SS18-214ENST00000580003 FAM90A18PA6NE21 464 aa7.13□□□□□ -1.27
SS18-214ENST00000580003 FAM90A16PA6NEW6 464 aa7.13□□□□□ -1.27
SS18-214ENST00000580003 FAM90A9PA6NNJ1 464 aa7.13□□□□□ -1.27
SS18-214ENST00000580003 FAM90A5PA8MXJ8 464 aa7.13□□□□□ -1.27
SS18-214ENST00000580003 ACKR2O00590 384 aa7.13□□□□□ -1.27
SS18-214ENST00000580003 FAM90A15PP0C7V4 464 aa7.13□□□□□ -1.27
SS18-214ENST00000580003 FAM90A14PP0C7W9 464 aa7.13□□□□□ -1.27
SS18-214ENST00000580003 TGM2P21980 687 aa7.13□□□□□ -1.27
SS18-214ENST00000580003 AP2B1P63010 937 aa7.13□□□□□ -1.27
SS18-214ENST00000580003 RPS6KA2Q15349 733 aa7.13□□□□□ -1.27
SS18-214ENST00000580003 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.13□□□□□ -1.27
SS18-214ENST00000580003 OR1N1Q8NGS0 311 aa7.13□□□□□ -1.27
SS18-214ENST00000580003 ZFPM2Q8WW38 1151 aa7.13□□□□□ -1.27
SS18-214ENST00000580003 FCRL4Q96PJ5 515 aa7.13□□□□□ -1.27
SS18-214ENST00000580003 TUBB6Q9BUF5 446 aa7.13□□□□□ -1.27
SS18-214ENST00000580003 HTATIP2Q9BUP3 242 aa7.13□□□□□ -1.27
SS18-214ENST00000580003 SLC8A2Q9UPR5 921 aa7.13□□□□□ -1.27
SS18-214ENST00000580003 COMMD10Q9Y6G5 202 aa7.13□□□□□ -1.27
SS18-214ENST00000580003 SLC38A8A6NNN8 435 aa7.12□□□□□ -1.27
SS18-214ENST00000580003 SOCS2O14508 198 aa7.12□□□□□ -1.27
SS18-214ENST00000580003 UGDHO60701 494 aa7.12□□□□□ -1.27
SS18-214ENST00000580003 CNOT3O75175 753 aaKnown RBP7.12□□□□□ -1.27
SS18-214ENST00000580003 TMEM191BP0C7N4 346 aa7.12□□□□□ -1.27
SS18-214ENST00000580003 PEPDP12955 493 aa7.12□□□□□ -1.27
SS18-214ENST00000580003 IGFBP2P18065 325 aa7.12□□□□□ -1.27
SS18-214ENST00000580003 FOXL2P58012 376 aa7.12□□□□□ -1.27
SS18-214ENST00000580003 FAM3BP58499 235 aaPredicted RBP7.12□□□□□ -1.27
SS18-214ENST00000580003 TBRG1Q3YBR2 411 aa7.12□□□□□ -1.27
SS18-214ENST00000580003 ZNF474Q6S9Z5 364 aaPredicted RBP7.12□□□□□ -1.27
SS18-214ENST00000580003 RINLQ6ZS11 566 aa7.12□□□□□ -1.27
SS18-214ENST00000580003 HMCESQ96FZ2 354 aa7.12□□□□□ -1.27
SS18-214ENST00000580003 TRMOQ9BU70 441 aa7.12□□□□□ -1.27
SS18-214ENST00000580003 ELAC1Q9H777 363 aaKnown RBP7.12□□□□□ -1.27
SS18-214ENST00000580003 PAPOLBQ9NRJ5 636 aaKnown RBP7.12□□□□□ -1.27
SS18-214ENST00000580003 AFG3L2Q9Y4W6 797 aa7.12□□□□□ -1.27
SS18-214ENST00000580003 ZNF335Q9H4Z2 1342 aaPredicted RBP7.11□□□□□ -1.27
SS18-214ENST00000580003 DPPA5A6NC42 116 aa7.11□□□□□ -1.27
SS18-214ENST00000580003 MBD3L5A6NJ08 208 aaPredicted RBP7.11□□□□□ -1.27
SS18-214ENST00000580003 ALDOCP09972 364 aaKnown RBP7.11□□□□□ -1.27
SS18-214ENST00000580003 PRF1P14222 555 aa7.11□□□□□ -1.27
SS18-214ENST00000580003 SHC2P98077 582 aa7.11□□□□□ -1.27
SS18-214ENST00000580003 PDCD2Q16342 344 aaPredicted RBP7.11□□□□□ -1.27
SS18-214ENST00000580003 SULT6B1Q6IMI4 303 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms