RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 ACTL9Q8TC94 416 aa25.93■■□□□ 1.74
SHMT1-207ENST00000580002 IGSF8Q969P0 613 aa25.93■■□□□ 1.74
SHMT1-207ENST00000580002 PPP2R3CQ969Q6 453 aa25.93■■□□□ 1.74
SHMT1-207ENST00000580002 AMACRQ9UHK6 382 aa25.93■■□□□ 1.74
SHMT1-207ENST00000580002 AGO1Q9UL18 857 aaKnown RBP25.93■■□□□ 1.74
SHMT1-207ENST00000580002 MRPS23Q9Y3D9 190 aaKnown RBP25.93■■□□□ 1.74
SHMT1-207ENST00000580002 TRAV19A0A0A6YYK7 116 aa25.92■■□□□ 1.74
SHMT1-207ENST00000580002 E9PAM4 449 aa25.92■■□□□ 1.74
SHMT1-207ENST00000580002 PAPLNO95428 1278 aa25.92■■□□□ 1.74
SHMT1-207ENST00000580002 RHOXF2BP0C7M4 288 aa25.92■■□□□ 1.74
SHMT1-207ENST00000580002 EPHB2P29323 1055 aa25.92■■□□□ 1.74
SHMT1-207ENST00000580002 KPNA1P52294 538 aaPredicted RBP25.92■■□□□ 1.74
SHMT1-207ENST00000580002 ITIH3Q06033 890 aa25.92■■□□□ 1.74
SHMT1-207ENST00000580002 FAM133BQ5BKY9 247 aaKnown RBP25.92■■□□□ 1.74
SHMT1-207ENST00000580002 FBXL22Q6P050 247 aa25.92■■□□□ 1.74
SHMT1-207ENST00000580002 TRAF3IP1Q8TDR0 691 aaPredicted RBP25.92■■□□□ 1.74
SHMT1-207ENST00000580002 RHOXF2Q9BQY4 288 aa25.92■■□□□ 1.74
SHMT1-207ENST00000580002 DNPEPQ9ULA0 475 aa25.92■■□□□ 1.74
SHMT1-207ENST00000580002 HEY1Q9Y5J3 304 aa25.92■■□□□ 1.74
SHMT1-207ENST00000580002 APOL1O14791 398 aa25.92■■□□□ 1.74
SHMT1-207ENST00000580002 DCLK1O15075 740 aa25.92■■□□□ 1.74
SHMT1-207ENST00000580002 DAPK3O43293 454 aa25.92■■□□□ 1.74
SHMT1-207ENST00000580002 ACSL4O60488 711 aa25.92■■□□□ 1.74
SHMT1-207ENST00000580002 CNTN5O94779 1100 aa25.92■■□□□ 1.74
SHMT1-207ENST00000580002 POU2F2P09086 479 aa25.92■■□□□ 1.74
SHMT1-207ENST00000580002 SLC7A9P82251 487 aa25.92■■□□□ 1.74
SHMT1-207ENST00000580002 SLC7A5Q01650 507 aa25.92■■□□□ 1.74
SHMT1-207ENST00000580002 CYP1B1Q16678 543 aa25.92■■□□□ 1.74
SHMT1-207ENST00000580002 NUGGCQ68CJ6 796 aa25.92■■□□□ 1.74
SHMT1-207ENST00000580002 EP400NLQ6ZTU2 488 aa25.92■■□□□ 1.74
SHMT1-207ENST00000580002 CIR1Q86X95 450 aaPredicted RBP25.92■■□□□ 1.74
SHMT1-207ENST00000580002 CMTM8Q8IZV2 173 aa25.92■■□□□ 1.74
SHMT1-207ENST00000580002 PLD4Q96BZ4 506 aa25.92■■□□□ 1.74
SHMT1-207ENST00000580002 C1orf74Q96LT6 269 aa25.92■■□□□ 1.74
SHMT1-207ENST00000580002 SLITRK6Q9H5Y7 841 aa25.92■■□□□ 1.74
SHMT1-207ENST00000580002 TASP1Q9H6P5 420 aa25.92■■□□□ 1.74
SHMT1-207ENST00000580002 NDFIP2Q9NV92 336 aa25.92■■□□□ 1.74
SHMT1-207ENST00000580002 SLC12A6Q9UHW9 1150 aa25.92■■□□□ 1.74
SHMT1-207ENST00000580002 C2orf16Q68DN1 1984 aa25.91■■□□□ 1.74
SHMT1-207ENST00000580002 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP25.91■■□□□ 1.74
SHMT1-207ENST00000580002 EFCAB8A8MWE9 144 aa25.91■■□□□ 1.74
SHMT1-207ENST00000580002 PHF2O75151 1096 aa25.91■■□□□ 1.74
SHMT1-207ENST00000580002 TBX10O75333 385 aa25.91■■□□□ 1.74
SHMT1-207ENST00000580002 PRAMEF12O95522 483 aa25.91■■□□□ 1.74
SHMT1-207ENST00000580002 COILP38432 576 aaPredicted RBP25.91■■□□□ 1.74
SHMT1-207ENST00000580002 HARS2P49590 506 aaKnown RBP25.91■■□□□ 1.74
SHMT1-207ENST00000580002 PRUNE1Q86TP1 453 aa25.91■■□□□ 1.74
SHMT1-207ENST00000580002 VSIG1Q86XK7 387 aa25.91■■□□□ 1.74
SHMT1-207ENST00000580002 UNC45BQ8IWX7 931 aa25.91■■□□□ 1.74
SHMT1-207ENST00000580002 MICALL1Q8N3F8 863 aa25.91■■□□□ 1.74
SHMT1-207ENST00000580002 P2RY11Q96G91 374 aa25.91■■□□□ 1.74
SHMT1-207ENST00000580002 EPAS1Q99814 870 aa25.91■■□□□ 1.74
SHMT1-207ENST00000580002 CFAP97Q9P2B7 532 aa25.91■■□□□ 1.74
SHMT1-207ENST00000580002 RCOR3Q9P2K3 495 aaPredicted RBP25.91■■□□□ 1.74
SHMT1-207ENST00000580002 ZNF487B1APH4 448 aa25.9■■□□□ 1.74
SHMT1-207ENST00000580002 RAD51CO43502 376 aa25.9■■□□□ 1.74
SHMT1-207ENST00000580002 TACR2P21452 398 aa25.9■■□□□ 1.74
SHMT1-207ENST00000580002 SGSHP51688 502 aa25.9■■□□□ 1.74
SHMT1-207ENST00000580002 TFDP2Q14188 446 aa25.9■■□□□ 1.74
SHMT1-207ENST00000580002 ALFQ53S48 1182 aa25.9■■□□□ 1.74
SHMT1-207ENST00000580002 ELMSAN1Q6PJG2 1045 aa25.9■■□□□ 1.74
SHMT1-207ENST00000580002 GPR149Q86SP6 731 aa25.9■■□□□ 1.74
SHMT1-207ENST00000580002 NPWQ8N729 165 aa25.9■■□□□ 1.74
SHMT1-207ENST00000580002 RPGRIP1Q96KN7 1286 aa25.9■■□□□ 1.74
SHMT1-207ENST00000580002 LRRC19Q9H756 370 aa25.9■■□□□ 1.74
SHMT1-207ENST00000580002 DZANK1Q9NVP4 752 aa25.9■■□□□ 1.74
SHMT1-207ENST00000580002 CCDC188H7C350 402 aa25.9■■□□□ 1.74
SHMT1-207ENST00000580002 APOC4-APOC2K7ER74 178 aa25.9■■□□□ 1.74
SHMT1-207ENST00000580002 LEFTY2O00292 366 aa25.9■■□□□ 1.74
SHMT1-207ENST00000580002 LIASO43766 372 aa25.9■■□□□ 1.74
SHMT1-207ENST00000580002 MFSD11O43934 449 aa25.9■■□□□ 1.74
SHMT1-207ENST00000580002 APOC2P02655 101 aa25.9■■□□□ 1.74
SHMT1-207ENST00000580002 HCAR3P49019 387 aa25.9■■□□□ 1.74
SHMT1-207ENST00000580002 VCPP55072 806 aaKnown RBP25.9■■□□□ 1.74
SHMT1-207ENST00000580002 CHSY1Q86X52 802 aa25.9■■□□□ 1.74
SHMT1-207ENST00000580002 CFAP52Q8N1V2 620 aa25.9■■□□□ 1.74
SHMT1-207ENST00000580002 USP13Q92995 863 aaPredicted RBP25.9■■□□□ 1.74
SHMT1-207ENST00000580002 LMCD1Q9NZU5 365 aa25.9■■□□□ 1.74
SHMT1-207ENST00000580002 GOLGA6L10A0A0M3HER8 536 aa25.89■■□□□ 1.73
SHMT1-207ENST00000580002 TSPAN3O60637 253 aa25.89■■□□□ 1.73
SHMT1-207ENST00000580002 FGF19O95750 216 aa25.89■■□□□ 1.73
SHMT1-207ENST00000580002 LTBRP36941 435 aa25.89■■□□□ 1.73
SHMT1-207ENST00000580002 CLUL1Q15846 466 aa25.89■■□□□ 1.73
SHMT1-207ENST00000580002 CCNG2Q16589 344 aa25.89■■□□□ 1.73
SHMT1-207ENST00000580002 ARHGAP15Q53QZ3 475 aa25.89■■□□□ 1.73
SHMT1-207ENST00000580002 CCDC137Q6PK04 289 aaKnown RBP25.89■■□□□ 1.73
SHMT1-207ENST00000580002 ZC3H18Q86VM9 953 aaKnown RBP25.89■■□□□ 1.73
SHMT1-207ENST00000580002 LGI2Q8N0V4 545 aa25.89■■□□□ 1.73
SHMT1-207ENST00000580002 C12orf50Q8NA57 414 aaPredicted RBP25.89■■□□□ 1.73
SHMT1-207ENST00000580002 LEMD2Q8NC56 503 aa25.89■■□□□ 1.73
SHMT1-207ENST00000580002 MAIP1Q8WWC4 291 aa25.89■■□□□ 1.73
SHMT1-207ENST00000580002 CLDND1Q9NY35 253 aa25.89■■□□□ 1.73
SHMT1-207ENST00000580002 DTLQ9NZJ0 730 aa25.89■■□□□ 1.73
SHMT1-207ENST00000580002 DMGDHQ9UI17 866 aaKnown RBP25.89■■□□□ 1.73
SHMT1-207ENST00000580002 TTI1O43156 1089 aa25.88■■□□□ 1.73
SHMT1-207ENST00000580002 PTGIRP43119 386 aa25.88■■□□□ 1.73
SHMT1-207ENST00000580002 NRLP54845 237 aa25.88■■□□□ 1.73
SHMT1-207ENST00000580002 SLC35B2Q8TB61 432 aa25.88■■□□□ 1.73
SHMT1-207ENST00000580002 SH3RF2Q8TEC5 729 aa25.88■■□□□ 1.73
SHMT1-207ENST00000580002 TBC1D31Q96DN5 1066 aa25.88■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms