RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 AHI1Q8N157 1196 aa24.76■■□□□ 1.55
SHMT1-206ENST00000579558 FUCA2Q9BTY2 467 aa24.76■■□□□ 1.55
SHMT1-206ENST00000579558 CALCOCO1Q9P1Z2 691 aa24.76■■□□□ 1.55
SHMT1-206ENST00000579558 KCNU1A8MYU2 1149 aa24.75■■□□□ 1.55
SHMT1-206ENST00000579558 NDUFV2P19404 249 aa24.75■■□□□ 1.55
SHMT1-206ENST00000579558 SCNN1AP37088 669 aa24.75■■□□□ 1.55
SHMT1-206ENST00000579558 MATKP42679 507 aa24.75■■□□□ 1.55
SHMT1-206ENST00000579558 FMO1Q01740 532 aa24.75■■□□□ 1.55
SHMT1-206ENST00000579558 LMNB2Q03252 620 aa24.75■■□□□ 1.55
SHMT1-206ENST00000579558 ENPP2Q13822 863 aa24.75■■□□□ 1.55
SHMT1-206ENST00000579558 CSRP2Q16527 193 aa24.75■■□□□ 1.55
SHMT1-206ENST00000579558 C2CD6Q53TS8 623 aa24.75■■□□□ 1.55
SHMT1-206ENST00000579558 PMS2CLQ68D20 193 aa24.75■■□□□ 1.55
SHMT1-206ENST00000579558 KIAA0907Q7Z7F0 614 aaPredicted RBP24.75■■□□□ 1.55
SHMT1-206ENST00000579558 CCDC117Q8IWD4 279 aaPredicted RBP24.75■■□□□ 1.55
SHMT1-206ENST00000579558 CFAP52Q8N1V2 620 aa24.75■■□□□ 1.55
SHMT1-206ENST00000579558 CARNMT1Q8N4J0 409 aa24.75■■□□□ 1.55
SHMT1-206ENST00000579558 RRN3Q9NYV6 651 aa24.75■■□□□ 1.55
SHMT1-206ENST00000579558 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP24.75■■□□□ 1.55
SHMT1-206ENST00000579558 PCDHGA5Q9Y5G8 931 aa24.75■■□□□ 1.55
SHMT1-206ENST00000579558 SYCE3A1L190 88 aa24.74■■□□□ 1.55
SHMT1-206ENST00000579558 F5H5T6 163 aa24.74■■□□□ 1.55
SHMT1-206ENST00000579558 GOLGA8SH3BPF8 625 aa24.74■■□□□ 1.55
SHMT1-206ENST00000579558 M0QYT0 321 aa24.74■■□□□ 1.55
SHMT1-206ENST00000579558 CHRNB2P17787 502 aa24.74■■□□□ 1.55
SHMT1-206ENST00000579558 CD70P32970 193 aa24.74■■□□□ 1.55
SHMT1-206ENST00000579558 ID4P47928 161 aa24.74■■□□□ 1.55
SHMT1-206ENST00000579558 CDH18Q13634 790 aa24.74■■□□□ 1.55
SHMT1-206ENST00000579558 CCDC6Q16204 474 aa24.74■■□□□ 1.55
SHMT1-206ENST00000579558 MAP7D1Q3KQU3 841 aa24.74■■□□□ 1.55
SHMT1-206ENST00000579558 MBLAC2Q68D91 279 aa24.74■■□□□ 1.55
SHMT1-206ENST00000579558 SERPINA13PQ6UXR4 307 aa24.74■■□□□ 1.55
SHMT1-206ENST00000579558 ADIPOR2Q86V24 386 aa24.74■■□□□ 1.55
SHMT1-206ENST00000579558 FRMD1Q8N878 549 aa24.74■■□□□ 1.55
SHMT1-206ENST00000579558 FIBINQ8TAL6 211 aa24.74■■□□□ 1.55
SHMT1-206ENST00000579558 CYB5D2Q8WUJ1 264 aa24.74■■□□□ 1.55
SHMT1-206ENST00000579558 STAP1Q9ULZ2 295 aa24.74■■□□□ 1.55
SHMT1-206ENST00000579558 DYNC1LI1Q9Y6G9 523 aaKnown RBP24.74■■□□□ 1.55
SHMT1-206ENST00000579558 PLXND1Q9Y4D7 1925 aa24.74■■□□□ 1.55
SHMT1-206ENST00000579558 THADAQ6YHU6 1953 aa24.74■■□□□ 1.55
SHMT1-206ENST00000579558 ABCA7Q8IZY2 2146 aa24.74■■□□□ 1.55
SHMT1-206ENST00000579558 DCHS1Q96JQ0 3298 aa24.73■■□□□ 1.55
SHMT1-206ENST00000579558 MAP3K13O43283 966 aa24.73■■□□□ 1.55
SHMT1-206ENST00000579558 SYNCRIPO60506 623 aaKnown RBP24.73■■□□□ 1.55
SHMT1-206ENST00000579558 CYP1A1P04798 512 aaPredicted RBP24.73■■□□□ 1.55
SHMT1-206ENST00000579558 PTMSP20962 102 aa24.73■■□□□ 1.55
SHMT1-206ENST00000579558 PRKCHP24723 683 aa24.73■■□□□ 1.55
SHMT1-206ENST00000579558 SULT1E1P49888 294 aa24.73■■□□□ 1.55
SHMT1-206ENST00000579558 FUT11Q495W5 492 aa24.73■■□□□ 1.55
SHMT1-206ENST00000579558 FNDC3BQ53EP0 1204 aaKnown RBP24.73■■□□□ 1.55
SHMT1-206ENST00000579558 PRR23CQ6ZRP0 262 aa24.73■■□□□ 1.55
SHMT1-206ENST00000579558 NPY6RQ99463 290 aa24.73■■□□□ 1.55
SHMT1-206ENST00000579558 SLC6A17Q9H1V8 727 aa24.73■■□□□ 1.55
SHMT1-206ENST00000579558 PLA2G4CQ9UP65 541 aa24.73■■□□□ 1.55
SHMT1-206ENST00000579558 TEX33O43247 280 aa24.72■■□□□ 1.55
SHMT1-206ENST00000579558 LUC7L3O95232 432 aaKnown RBP24.72■■□□□ 1.55
SHMT1-206ENST00000579558 POLR2EP19388 210 aaKnown RBP24.72■■□□□ 1.55
SHMT1-206ENST00000579558 MPLP40238 635 aa24.72■■□□□ 1.55
SHMT1-206ENST00000579558 CREB5Q02930 508 aa24.72■■□□□ 1.55
SHMT1-206ENST00000579558 LMAN2Q12907 356 aa24.72■■□□□ 1.55
SHMT1-206ENST00000579558 FILIP1LQ4L180 1135 aa24.72■■□□□ 1.55
SHMT1-206ENST00000579558 OTUD1Q5VV17 481 aaPredicted RBP24.72■■□□□ 1.55
SHMT1-206ENST00000579558 KIAA1324Q6UXG2 1013 aaKnown RBP24.72■■□□□ 1.55
SHMT1-206ENST00000579558 TRIM72Q6ZMU5 477 aa24.72■■□□□ 1.55
SHMT1-206ENST00000579558 RMDN1Q96DB5 314 aa24.72■■□□□ 1.55
SHMT1-206ENST00000579558 MRGPRX1Q96LB2 322 aa24.72■■□□□ 1.55
SHMT1-206ENST00000579558 PRMT1Q99873 361 aaKnown RBP24.72■■□□□ 1.55
SHMT1-206ENST00000579558 RTN4Q9NQC3 1192 aaKnown RBP24.72■■□□□ 1.55
SHMT1-206ENST00000579558 MBD1Q9UIS9 605 aaPredicted RBP24.72■■□□□ 1.55
SHMT1-206ENST00000579558 PRR5-ARHGAP8B1AHC4 643 aa24.71■■□□□ 1.55
SHMT1-206ENST00000579558 H0Y626 953 aa24.71■■□□□ 1.55
SHMT1-206ENST00000579558 ZNF217O75362 1048 aa24.71■■□□□ 1.55
SHMT1-206ENST00000579558 ATP5BP06576 529 aaKnown RBP24.71■■□□□ 1.55
SHMT1-206ENST00000579558 EPHX1P07099 455 aa24.71■■□□□ 1.55
SHMT1-206ENST00000579558 TFE3P19532 575 aaPredicted RBP24.71■■□□□ 1.55
SHMT1-206ENST00000579558 DHPSP49366 369 aaPredicted RBP24.71■■□□□ 1.55
SHMT1-206ENST00000579558 ARHGAP8P85298 464 aa24.71■■□□□ 1.55
SHMT1-206ENST00000579558 MTA1Q13330 715 aa24.71■■□□□ 1.55
SHMT1-206ENST00000579558 IQCB1Q15051 598 aa24.71■■□□□ 1.55
SHMT1-206ENST00000579558 MMS22LQ6ZRQ5 1243 aa24.71■■□□□ 1.55
SHMT1-206ENST00000579558 LPCAT2Q7L5N7 544 aa24.71■■□□□ 1.55
SHMT1-206ENST00000579558 LMLNQ96KR4 655 aa24.71■■□□□ 1.55
SHMT1-206ENST00000579558 ADAM33Q9BZ11 813 aa24.71■■□□□ 1.55
SHMT1-206ENST00000579558 PIGVQ9NUD9 493 aa24.71■■□□□ 1.55
SHMT1-206ENST00000579558 DMXL1Q9Y485 3027 aa24.7■■□□□ 1.55
SHMT1-206ENST00000579558 MUC22E2RYF6 1773 aaPredicted RBP24.7■■□□□ 1.55
SHMT1-206ENST00000579558 CKAP5Q14008 2032 aa24.7■■□□□ 1.54
SHMT1-206ENST00000579558 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa24.7■■□□□ 1.54
SHMT1-206ENST00000579558 FOXD2O60548 495 aaPredicted RBP24.7■■□□□ 1.54
SHMT1-206ENST00000579558 DLDP09622 509 aaKnown RBP24.7■■□□□ 1.54
SHMT1-206ENST00000579558 HLA-EP13747 358 aa24.7■■□□□ 1.54
SHMT1-206ENST00000579558 FLT3P36888 993 aa24.7■■□□□ 1.54
SHMT1-206ENST00000579558 DEUP1Q05D60 604 aa24.7■■□□□ 1.54
SHMT1-206ENST00000579558 RSPO4Q2I0M5 234 aaPredicted RBP24.7■■□□□ 1.54
SHMT1-206ENST00000579558 FSCBQ5H9T9 825 aa24.7■■□□□ 1.54
SHMT1-206ENST00000579558 RABGAP1LQ5R372 815 aa24.7■■□□□ 1.54
SHMT1-206ENST00000579558 SND1Q7KZF4 910 aaKnown RBP eCLIP24.7■■□□□ 1.54
SHMT1-206ENST00000579558 TMEFF1Q8IYR6 380 aa24.7■■□□□ 1.54
SHMT1-206ENST00000579558 SLC30A5Q8TAD4 765 aa24.7■■□□□ 1.54
SHMT1-206ENST00000579558 TBCBQ99426 244 aa24.7■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms