RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 RAP1GAP2Q684P5 730 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 LUZP2Q86TE4 346 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 GALNT13Q8IUC8 556 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 CBWD2Q8IUF1 395 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 HID1Q8IV36 788 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 RASGRP3Q8IV61 690 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 BBS7Q8IWZ6 715 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 SLC30A5Q8TAD4 765 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 HEXDCQ8WVB3 486 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 RSRC1Q96IZ7 334 aaKnown RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 BTBD6Q96KE9 485 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 TMEM175Q9BSA9 504 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 ULBP1Q9BZM6 244 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 OSBPL2Q9H1P3 480 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 GOLPH3Q9H4A6 298 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 POPDC2Q9HBU9 364 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 MIEF1Q9NQG6 463 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 EIF4ENIF1Q9NRA8 985 aaKnown RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 GJB4Q9NTQ9 266 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 VPS18Q9P253 973 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 NIPSNAP3AQ9UFN0 247 aaPredicted RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 MRTO4Q9UKD2 239 aaKnown RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 NUDT5Q9UKK9 219 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 TSPAN16Q9UKR8 245 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 AP4E1Q9UPM8 1137 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 ATP8A1Q9Y2Q0 1164 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 HES2Q9Y543 173 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 COLEC10Q9Y6Z7 277 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 GNG14A0A1W2PPG7 69 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 TRIM49BA6NDI0 452 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 PRR5-ARHGAP8B1AHC4 643 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 MEFVO15553 781 aaPredicted RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 FGF18O76093 207 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 PPP2R1BP30154 601 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 RPA3P35244 121 aaPredicted RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 TIE1P35590 1138 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 GRM5P41594 1212 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 NUMBP49757 651 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 EIF3BP55884 814 aaKnown RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 PTENP60484 403 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 RPP38P78345 283 aaKnown RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 MRPS5P82675 430 aaKnown RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 GHRHRQ02643 423 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 PDIA2Q13087 525 aaKnown RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 CUL4AQ13619 759 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 SLC9A5Q14940 896 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 EFTUD2Q15029 972 aaKnown RBP eCLIP3□□□□□ -1.935e-9■■■□□ 15.7
SMCHD1-203ENST00000577880 DDR2Q16832 855 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 AMZ1Q400G9 498 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 ARSJQ5FYB0 599 aaPredicted RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 TFDP3Q5H9I0 405 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 SLC39A5Q6ZMH5 540 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 ANKS1BQ7Z6G8 1248 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 CCDC60Q8IWA6 550 aaPredicted RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 ZBED8Q8IZ13 594 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 CDK20Q8IZL9 346 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 EID3Q8N140 333 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 CCDC33Q8N5R6 958 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 ZNF669Q96BR6 464 aaPredicted RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 ATXN7L3BQ96GX2 97 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 NAF1Q96HR8 494 aaKnown RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 FERD3LQ96RJ6 166 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 PRRX2Q99811 253 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 MLPHQ9BV36 600 aaPredicted RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 OSBPL1AQ9BXW6 950 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 FRMD8Q9BZ67 464 aaPredicted RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 TM6SF2Q9BZW4 377 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 POLR1EQ9GZS1 481 aaKnown RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 ALG13Q9NP73 1137 aaKnown RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 STAU2Q9NUL3 570 aaKnown RBP eCLIP3□□□□□ -1.93
SMCHD1-203ENST00000577880 SPTLC3Q9NUV7 552 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 DNAJC28Q9NX36 388 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 RBPJLQ9UBG7 517 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 TBK1Q9UHD2 729 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 ANAPC2Q9UJX6 822 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 CA14Q9ULX7 337 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 ENTPD4Q9Y227 616 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 APOBEC2Q9Y235 224 aaKnown RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 OR10H1Q9Y4A9 318 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 CDC42BPAQ5VT25 1732 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 MAP1BP46821 2468 aaKnown RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 CST8O60676 142 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 FTH1P02794 183 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 KRT16P08779 473 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 HOXB2P14652 356 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 CES1P23141 567 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 PTPN9P43378 593 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 SERPINB9P50453 376 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 CCR4P51679 360 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 ARSEP51690 589 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 COPZ1P61923 177 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 SPIDRQ14159 915 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 FAM83EQ2M2I3 478 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 KRTAP21-3Q3LHN1 58 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 ZNF618Q5T7W0 954 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 CENPPQ6IPU0 288 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 LIX1Q8N485 282 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 TOP6BLQ8N6T0 577 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 GBP7Q8N8V2 638 aaPredicted RBP3□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms