RNA–Protein interactions for RNA: ENST00000577085.1

SF3B3-215, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-215ENST00000577085 NUCKS1Q9H1E3 243 aaKnown RBP16.08■□□□□ 0.16
SF3B3-215ENST00000577085 VPS16Q9H269 839 aa16.08■□□□□ 0.16
SF3B3-215ENST00000577085 PLCB1Q9NQ66 1216 aa16.08■□□□□ 0.16
SF3B3-215ENST00000577085 RXFP3Q9NSD7 469 aa16.08■□□□□ 0.16
SF3B3-215ENST00000577085 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.08■□□□□ 0.16
SF3B3-215ENST00000577085 ASNSD1Q9NWL6 643 aa16.08■□□□□ 0.16
SF3B3-215ENST00000577085 DDIT4Q9NX09 232 aa16.08■□□□□ 0.16
SF3B3-215ENST00000577085 SPAG17Q6Q759 2223 aa16.08■□□□□ 0.16
SF3B3-215ENST00000577085 MED19A0JLT2 244 aaPredicted RBP16.07■□□□□ 0.16
SF3B3-215ENST00000577085 ERBB2P04626 1255 aa16.07■□□□□ 0.16
SF3B3-215ENST00000577085 DLDP09622 509 aaKnown RBP16.07■□□□□ 0.16
SF3B3-215ENST00000577085 CYP11B1P15538 503 aa16.07■□□□□ 0.16
SF3B3-215ENST00000577085 CDK11BP21127 795 aaKnown RBP16.07■□□□□ 0.16
SF3B3-215ENST00000577085 CD6P30203 668 aa16.07■□□□□ 0.16
SF3B3-215ENST00000577085 RPS24P62847 133 aaKnown RBP16.07■□□□□ 0.16
SF3B3-215ENST00000577085 ZNF33AQ06730 810 aa16.07■□□□□ 0.16
SF3B3-215ENST00000577085 KCNMA1Q12791 1236 aa16.07■□□□□ 0.16
SF3B3-215ENST00000577085 LMAN2Q12907 356 aa16.07■□□□□ 0.16
SF3B3-215ENST00000577085 NME3Q13232 169 aa16.07■□□□□ 0.16
SF3B3-215ENST00000577085 ENPP2Q13822 863 aa16.07■□□□□ 0.16
SF3B3-215ENST00000577085 TRIM61Q5EBN2 209 aa16.07■□□□□ 0.16
SF3B3-215ENST00000577085 MS4A13Q5J8X5 152 aa16.07■□□□□ 0.16
SF3B3-215ENST00000577085 PPM1JQ5JR12 505 aa16.07■□□□□ 0.16
SF3B3-215ENST00000577085 TAF3Q5VWG9 929 aa16.07■□□□□ 0.16
SF3B3-215ENST00000577085 DAB2IPQ5VWQ8 1189 aa16.07■□□□□ 0.16
SF3B3-215ENST00000577085 RAP1GAP2Q684P5 730 aa16.07■□□□□ 0.16
SF3B3-215ENST00000577085 NADSYN1Q6IA69 706 aa16.07■□□□□ 0.16
SF3B3-215ENST00000577085 RABEPKQ7Z6M1 372 aa16.07■□□□□ 0.16
SF3B3-215ENST00000577085 CACUL1Q86Y37 369 aa16.07■□□□□ 0.16
SF3B3-215ENST00000577085 RGL4Q8IZJ4 473 aa16.07■□□□□ 0.16
SF3B3-215ENST00000577085 CFAP52Q8N1V2 620 aa16.07■□□□□ 0.16
SF3B3-215ENST00000577085 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.07■□□□□ 0.16
SF3B3-215ENST00000577085 CEP76Q8TAP6 659 aa16.07■□□□□ 0.16
SF3B3-215ENST00000577085 HSPA12BQ96MM6 686 aa16.07■□□□□ 0.16
SF3B3-215ENST00000577085 PRICKLE1Q96MT3 831 aaPredicted RBP16.07■□□□□ 0.16
SF3B3-215ENST00000577085 STK33Q9BYT3 514 aa16.07■□□□□ 0.16
SF3B3-215ENST00000577085 CD248Q9HCU0 757 aa16.07■□□□□ 0.16
SF3B3-215ENST00000577085 ATXN2Q99700 1313 aaKnown RBP16.07■□□□□ 0.16
SF3B3-215ENST00000577085 SPTBN4Q9H254 2564 aa16.07■□□□□ 0.16
SF3B3-215ENST00000577085 THADAQ6YHU6 1953 aa16.06■□□□□ 0.16
SF3B3-215ENST00000577085 LNP1A1A4G5 178 aa16.06■□□□□ 0.16
SF3B3-215ENST00000577085 KCNU1A8MYU2 1149 aa16.06■□□□□ 0.16
SF3B3-215ENST00000577085 PATE3B3GLJ2 98 aa16.06■□□□□ 0.16
SF3B3-215ENST00000577085 HLA-EP13747 358 aa16.06■□□□□ 0.16
SF3B3-215ENST00000577085 TACR2P21452 398 aa16.06■□□□□ 0.16
SF3B3-215ENST00000577085 ITPKAP23677 461 aa16.06■□□□□ 0.16
SF3B3-215ENST00000577085 OXTRP30559 389 aa16.06■□□□□ 0.16
SF3B3-215ENST00000577085 CD70P32970 193 aa16.06■□□□□ 0.16
SF3B3-215ENST00000577085 HOXD12P35452 270 aa16.06■□□□□ 0.16
SF3B3-215ENST00000577085 ATXN3P54252 364 aaPredicted RBP16.06■□□□□ 0.16
SF3B3-215ENST00000577085 RNASE9P60153 205 aaKnown RBP16.06■□□□□ 0.16
SF3B3-215ENST00000577085 SLC6A3Q01959 620 aa16.06■□□□□ 0.16
SF3B3-215ENST00000577085 MTA1Q13330 715 aa16.06■□□□□ 0.16
SF3B3-215ENST00000577085 RABGAP1LQ5R372 815 aa16.06■□□□□ 0.16
SF3B3-215ENST00000577085 CCDC183Q5T5S1 534 aa16.06■□□□□ 0.16
SF3B3-215ENST00000577085 RNF219Q5W0B1 726 aaPredicted RBP16.06■□□□□ 0.16
SF3B3-215ENST00000577085 RBM43Q6ZSC3 357 aaKnown RBP16.06■□□□□ 0.16
SF3B3-215ENST00000577085 SND1Q7KZF4 910 aaKnown RBP eCLIP16.06■□□□□ 0.16
SF3B3-215ENST00000577085 ADIPOR2Q86V24 386 aa16.06■□□□□ 0.16
SF3B3-215ENST00000577085 FIBINQ8TAL6 211 aa16.06■□□□□ 0.16
SF3B3-215ENST00000577085 FOXJ1Q92949 421 aa16.06■□□□□ 0.16
SF3B3-215ENST00000577085 SLC2A13Q96QE2 648 aa16.06■□□□□ 0.16
SF3B3-215ENST00000577085 MKRN2Q9H000 416 aaKnown RBP16.06■□□□□ 0.16
SF3B3-215ENST00000577085 TMEM9BQ9NQ34 198 aa16.06■□□□□ 0.16
SF3B3-215ENST00000577085 FANCLQ9NW38 375 aa16.06■□□□□ 0.16
SF3B3-215ENST00000577085 STAP1Q9ULZ2 295 aa16.06■□□□□ 0.16
SF3B3-215ENST00000577085 DNAH14Q0VDD8 3507 aa16.06■□□□□ 0.16
SF3B3-215ENST00000577085 MEI4A8MW99 385 aa16.05■□□□□ 0.16
SF3B3-215ENST00000577085 F8VZ95 297 aa16.05■□□□□ 0.16
SF3B3-215ENST00000577085 LUC7L3O95232 432 aaKnown RBP16.05■□□□□ 0.16
SF3B3-215ENST00000577085 IGLV3-25P01717 112 aa16.05■□□□□ 0.16
SF3B3-215ENST00000577085 ASLP04424 464 aa16.05■□□□□ 0.16
SF3B3-215ENST00000577085 GNSP15586 552 aa16.05■□□□□ 0.16
SF3B3-215ENST00000577085 MYL5Q02045 173 aa16.05■□□□□ 0.16
SF3B3-215ENST00000577085 KRT31Q15323 416 aa16.05■□□□□ 0.16
SF3B3-215ENST00000577085 DUOXA1Q1HG43 343 aa16.05■□□□□ 0.16
SF3B3-215ENST00000577085 PTPN20Q4JDL3 420 aa16.05■□□□□ 0.16
SF3B3-215ENST00000577085 WDR45BQ5MNZ6 344 aa16.05■□□□□ 0.16
SF3B3-215ENST00000577085 TTC39BQ5VTQ0 682 aaPredicted RBP16.05■□□□□ 0.16
SF3B3-215ENST00000577085 CDKAL1Q5VV42 579 aa16.05■□□□□ 0.16
SF3B3-215ENST00000577085 OLFML1Q6UWY5 402 aa16.05■□□□□ 0.16
SF3B3-215ENST00000577085 METTL3Q86U44 580 aaKnown RBP16.05■□□□□ 0.16
SF3B3-215ENST00000577085 ERICH1Q86X53 443 aa16.05■□□□□ 0.16
SF3B3-215ENST00000577085 OR2T3Q8NH03 318 aa16.05■□□□□ 0.16
SF3B3-215ENST00000577085 WFDC5Q8TCV5 224 aa16.05■□□□□ 0.16
SF3B3-215ENST00000577085 C18orf8Q96DM3 657 aa16.05■□□□□ 0.16
SF3B3-215ENST00000577085 TOE1Q96GM8 510 aaKnown RBP16.05■□□□□ 0.16
SF3B3-215ENST00000577085 SPAG5Q96R06 1193 aa16.05■□□□□ 0.16
SF3B3-215ENST00000577085 NAT10Q9H0A0 1025 aaKnown RBP16.05■□□□□ 0.16
SF3B3-215ENST00000577085 FBRSQ9HAH7 460 aa16.05■□□□□ 0.16
SF3B3-215ENST00000577085 ITM2CQ9NQX7 267 aa16.05■□□□□ 0.16
SF3B3-215ENST00000577085 FAM207AQ9NSI2 230 aaPredicted RBP16.05■□□□□ 0.16
SF3B3-215ENST00000577085 RRN3Q9NYV6 651 aa16.05■□□□□ 0.16
SF3B3-215ENST00000577085 KIAA1522Q9P206 1035 aaPredicted RBP16.05■□□□□ 0.16
SF3B3-215ENST00000577085 SUN2Q9UH99 717 aa16.05■□□□□ 0.16
SF3B3-215ENST00000577085 EVLQ9UI08 416 aaPredicted RBP16.05■□□□□ 0.16
SF3B3-215ENST00000577085 XPO7Q9UIA9 1087 aaKnown RBP16.05■□□□□ 0.16
SF3B3-215ENST00000577085 PILRBQ9UKJ0 227 aa16.05■□□□□ 0.16
SF3B3-215ENST00000577085 MYO18AQ92614 2054 aaKnown RBP16.04■□□□□ 0.16
SF3B3-215ENST00000577085 C4orf47A7E2U8 309 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms