RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 DAOAP59103 153 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 CRADDP78560 199 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 BST1Q10588 318 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 ATG16L1Q676U5 607 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 CASC4Q6P4E1 433 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 UNC5BQ8IZJ1 945 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 ZNF567Q8N184 647 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 TMEM86AQ8N2M4 240 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 RAB3IL1Q8TBN0 382 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 PMM1Q92871 262 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 E2F7Q96AV8 911 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 TUBB6Q9BUF5 446 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 CEP41Q9BYV8 373 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 ULBP1Q9BZM6 244 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 IGSF9Q9P2J2 1179 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 CACNG4Q9UBN1 327 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 YJEFN3A6XGL0 299 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 E7ENQ6 273 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 FAM72CH0Y354 149 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 I3L4J1 428 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 BIRC5O15392 142 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 SH3BP5O60239 455 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 HAUS5O94927 633 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 MYL2P10916 166 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 PGAM1P18669 254 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 MGAT1P26572 445 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 PSMB4P28070 264 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 MLH1P40692 756 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 SESN2P58004 480 aaPredicted RBP10.36□□□□□ -0.75
VPS53-220ENST00000576149 MRPS6P82932 125 aaKnown RBP10.36□□□□□ -0.75
VPS53-220ENST00000576149 TMPRSS15P98073 1019 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 SCAPQ12770 1279 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 SEMA3BQ13214 749 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 TEX44Q53QW1 395 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 RAB41Q5JT25 222 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 FAM72AQ5TYM5 149 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 CES4AQ5XG92 561 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 FAM72DQ6L9T8 149 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 LONP2Q86WA8 852 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 FAM72BQ86X60 149 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 NUDCD3Q8IVD9 361 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 TP53INP2Q8IXH6 220 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 FAM13CQ8NE31 585 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 SLC7A14Q8TBB6 771 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 CDKL2Q92772 493 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 PCED1BQ96HM7 432 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 SMOQ99835 787 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 SYT15Q9BQS2 421 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 TACO1Q9BSH4 297 aaKnown RBP10.36□□□□□ -0.75
VPS53-220ENST00000576149 NAT9Q9BTE0 207 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 WDR6Q9NNW5 1121 aaKnown RBP10.36□□□□□ -0.75
VPS53-220ENST00000576149 CNGB3Q9NQW8 809 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 FAM105AQ9NUU6 356 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 SEPT10Q9P0V9 454 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 MCM8Q9UJA3 840 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 TSC2P49815 1807 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 DOCK3Q8IZD9 2030 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.36□□□□□ -0.75
VPS53-220ENST00000576149 FAM237BA0A1B0GVD1 139 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 MYBPHLA2RUH7 354 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 I6L893 689 aaPredicted RBP10.36□□□□□ -0.75
VPS53-220ENST00000576149 CAPN9O14815 690 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 ZNF189O75820 626 aaPredicted RBP10.36□□□□□ -0.75
VPS53-220ENST00000576149 AP1G2O75843 785 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 ANP32DO95626 131 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 THP07101 528 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 BPGMP07738 259 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 EPHB2P29323 1055 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 HCAR3P49019 387 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 APLP1P51693 650 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 RABGGTBP53611 331 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 OCRLQ01968 901 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 NAB1Q13506 487 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 CRYMQ14894 314 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 CHI3L2Q15782 390 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 STXBP5Q5T5C0 1151 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 GPRIN1Q7Z2K8 1008 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 FAM35AQ86V20 835 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 STKLD1Q8NE28 680 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 ZMIZ2Q8NF64 920 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 ACMSDQ8TDX5 336 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 PTCD3Q96EY7 689 aaKnown RBP10.36□□□□□ -0.75
VPS53-220ENST00000576149 PGAP3Q96FM1 320 aaPredicted RBP10.36□□□□□ -0.75
VPS53-220ENST00000576149 KCNK16Q96T55 309 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 GAD1Q99259 594 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 ANLNQ9NQW6 1124 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 FBXO6Q9NRD1 293 aaPredicted RBP10.36□□□□□ -0.75
VPS53-220ENST00000576149 TMEM30AQ9NV96 361 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 PIH1D1Q9NWS0 290 aaKnown RBP10.36□□□□□ -0.75
VPS53-220ENST00000576149 KCNK4Q9NYG8 393 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 FBXW11Q9UKB1 542 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 ST3GAL5Q9UNP4 418 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 RAD54BQ9Y620 910 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 CDY2AQ9Y6F7 541 aa10.36□□□□□ -0.75
VPS53-220ENST00000576149 PCNTO95613 3336 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 ERCC2P18074 760 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 RGS2P41220 211 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 CLCNKBP51801 687 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 AFF1P51825 1210 aaKnown RBP10.35□□□□□ -0.75
VPS53-220ENST00000576149 CACNA2D1P54289 1103 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms