RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 PTGES3LE9PB15 166 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 M0R296 226 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 TAF4O00268 1085 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 CLGNO14967 610 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 TEX33O43247 280 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 KLHL18O94889 574 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 GASTP01350 101 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 TUBB4AP04350 444 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 HNRNPCP07910 306 aaKnown RBP eCLIP6.24□□□□□ -1.411e-6■■□□□ 11.4
VPS53-219ENST00000576019 LAMP2P13473 410 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 PSMC2P35998 433 aaKnown RBP6.24□□□□□ -1.41
VPS53-219ENST00000576019 WNT3AP56704 352 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 RPS3AP61247 264 aaKnown RBP6.24□□□□□ -1.41
VPS53-219ENST00000576019 GPS1Q13098 491 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 DCTN2Q13561 401 aaKnown RBP6.24□□□□□ -1.41
VPS53-219ENST00000576019 SEC23BQ15437 767 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 CACHD1Q5VU97 1274 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 TMEM200BQ69YZ2 307 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 KLHL24Q6TFL4 600 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 ZNF572Q7Z3I7 529 aaPredicted RBP6.24□□□□□ -1.41
VPS53-219ENST00000576019 FRMD5Q7Z6J6 570 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 USP37Q86T82 979 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 NLRX1Q86UT6 975 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 SPPL2CQ8IUH8 684 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 KIAA2013Q8IYS2 634 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 ZDHHC14Q8IZN3 488 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 C17orf53Q8N3J3 647 aaPredicted RBP6.24□□□□□ -1.41
VPS53-219ENST00000576019 KCTD6Q8NC69 237 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 PDZD8Q8NEN9 1154 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 MGARPQ8TDB4 240 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 SMCR8Q8TEV9 937 aaPredicted RBP6.24□□□□□ -1.41
VPS53-219ENST00000576019 TBC1D5Q92609 795 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 RSC1A1Q92681 617 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 USP6NLQ92738 828 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 SH3KBP1Q96B97 665 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 TSPAN17Q96FV3 270 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 GPATCH1Q9BRR8 931 aaKnown RBP6.24□□□□□ -1.41
VPS53-219ENST00000576019 SEZ6LQ9BYH1 1024 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 FTOQ9C0B1 505 aaKnown RBP eCLIP6.24□□□□□ -1.41
VPS53-219ENST00000576019 SLC25A32Q9H2D1 315 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 RMI1Q9H9A7 625 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 IL21RQ9HBE5 538 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 ZBTB26Q9HCK0 441 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 FSCN3Q9NQT6 498 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 DIAPH3Q9NSV4 1193 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 ABCF3Q9NUQ8 709 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 RLIMQ9NVW2 624 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 ARGLU1Q9NWB6 273 aaPredicted RBP6.24□□□□□ -1.41
VPS53-219ENST00000576019 NDUFAF4Q9P032 175 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 CHORDC1Q9UHD1 332 aaPredicted RBP6.24□□□□□ -1.41
VPS53-219ENST00000576019 SLC23A1Q9UHI7 598 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 CAPN11Q9UMQ6 739 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 HPSEQ9Y251 543 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 LRRC37AA6NMS7 1700 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 MYO9AB2RTY4 2548 aa6.24□□□□□ -1.41
VPS53-219ENST00000576019 TENM4Q6N022 2769 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 FBN3Q75N90 2809 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 A0A0G2JNJ9 132 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 GTPBP10A4D1E9 387 aaKnown RBP6.23□□□□□ -1.41
VPS53-219ENST00000576019 FITM1A5D6W6 292 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 VILLO15195 856 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 DYRK3O43781 588 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 RRP9O43818 475 aaKnown RBP6.23□□□□□ -1.41
VPS53-219ENST00000576019 SLC43A1O75387 559 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 RPP40O75818 363 aaKnown RBP6.23□□□□□ -1.41
VPS53-219ENST00000576019 TSPAN9O75954 239 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 VIPP01282 170 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 ARP10275 920 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 PFKLP17858 780 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 NNMTP40261 264 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 DUSP2Q05923 314 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 SP140Q13342 867 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 NPY5RQ15761 445 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 NFIL3Q16649 462 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 LEXMQ3ZCV2 418 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 TRIM60Q495X7 471 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 PLA1AQ53H76 456 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 ZNF484Q5JVG2 852 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 ANO7Q6IWH7 933 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 CD300LDQ6UXZ3 194 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 ZNF365Q70YC5 407 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 LRRC8DQ7L1W4 858 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 UBE3BQ7Z3V4 1068 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 HSCBQ8IWL3 235 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 ZFPM1Q8IX07 1006 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 TAGAPQ8N103 731 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 GADD45GIP1Q8TAE8 222 aaPredicted RBP6.23□□□□□ -1.41
VPS53-219ENST00000576019 METTL6Q8TCB7 284 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 EDAQ92838 391 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 ZSWIM3Q96MP5 696 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 SSBP4Q9BWG4 385 aaPredicted RBP6.23□□□□□ -1.41
VPS53-219ENST00000576019 MRPL9Q9BYD2 267 aaKnown RBP6.23□□□□□ -1.41
VPS53-219ENST00000576019 OR10A4Q9H209 315 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 SLC28A3Q9HAS3 691 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 GPR35Q9HC97 309 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 MRPS18AQ9NVS2 196 aaKnown RBP6.23□□□□□ -1.41
VPS53-219ENST00000576019 TBC1D14Q9P2M4 693 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 DKK4Q9UBT3 224 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 Q9UFV3 132 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 PLA2G2DQ9UNK4 145 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms