RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 CSGALNACT2Q8N6G5 542 aa16.99■□□□□ 0.31
VPS53-218ENST00000575207 WDR48Q8TAF3 677 aa16.99■□□□□ 0.31
VPS53-218ENST00000575207 SUN2Q9UH99 717 aa16.99■□□□□ 0.31
VPS53-218ENST00000575207 ITGA11Q9UKX5 1188 aa16.99■□□□□ 0.31
VPS53-218ENST00000575207 STYXL1Q9Y6J8 313 aa16.99■□□□□ 0.31
VPS53-218ENST00000575207 CCDC168Q8NDH2 2452 aa16.98■□□□□ 0.31
VPS53-218ENST00000575207 TDRD6O60522 2096 aaKnown RBP16.98■□□□□ 0.31
VPS53-218ENST00000575207 DOCK9Q9BZ29 2069 aa16.98■□□□□ 0.31
VPS53-218ENST00000575207 RNASEH2AO75792 299 aaKnown RBP16.98■□□□□ 0.31
VPS53-218ENST00000575207 SLC5A3P53794 718 aa16.98■□□□□ 0.31
VPS53-218ENST00000575207 RBP5P82980 135 aa16.98■□□□□ 0.31
VPS53-218ENST00000575207 GUSBP11Q6P575 273 aa16.98■□□□□ 0.31
VPS53-218ENST00000575207 EFL1Q7Z2Z2 1120 aaKnown RBP16.98■□□□□ 0.31
VPS53-218ENST00000575207 OR6B3Q8NGW1 331 aa16.98■□□□□ 0.31
VPS53-218ENST00000575207 KCNK16Q96T55 309 aa16.98■□□□□ 0.31
VPS53-218ENST00000575207 NCKIPSDQ9NZQ3 722 aa16.98■□□□□ 0.31
VPS53-218ENST00000575207 SIX4Q9UIU6 781 aa16.98■□□□□ 0.31
VPS53-218ENST00000575207 AGO2Q9UKV8 859 aaKnown RBP16.98■□□□□ 0.31
VPS53-218ENST00000575207 DMTF1Q9Y222 760 aa16.98■□□□□ 0.31
VPS53-218ENST00000575207 ZNF510Q9Y2H8 683 aa16.98■□□□□ 0.31
VPS53-218ENST00000575207 ANKHD1Q8IWZ3 2542 aaKnown RBP16.97■□□□□ 0.31
VPS53-218ENST00000575207 MID1O15344 667 aa16.97■□□□□ 0.31
VPS53-218ENST00000575207 STC2O76061 302 aa16.97■□□□□ 0.31
VPS53-218ENST00000575207 KLKB1P03952 638 aa16.97■□□□□ 0.31
VPS53-218ENST00000575207 SLC6A4P31645 630 aa16.97■□□□□ 0.31
VPS53-218ENST00000575207 NUDT1P36639 197 aa16.97■□□□□ 0.31
VPS53-218ENST00000575207 PLA2G4AP47712 749 aa16.97■□□□□ 0.31
VPS53-218ENST00000575207 ADPRHP54922 357 aa16.97■□□□□ 0.31
VPS53-218ENST00000575207 WNT7BP56706 349 aa16.97■□□□□ 0.31
VPS53-218ENST00000575207 PPP2CBP62714 309 aa16.97■□□□□ 0.31
VPS53-218ENST00000575207 PPP2CAP67775 309 aa16.97■□□□□ 0.31
VPS53-218ENST00000575207 KCNMA1Q12791 1236 aa16.97■□□□□ 0.31
VPS53-218ENST00000575207 STAT4Q14765 748 aa16.97■□□□□ 0.31
VPS53-218ENST00000575207 CST6Q15828 149 aa16.97■□□□□ 0.31
VPS53-218ENST00000575207 CDKN3Q16667 212 aa16.97■□□□□ 0.31
VPS53-218ENST00000575207 ZCCHC8Q6NZY4 707 aaKnown RBP16.97■□□□□ 0.31
VPS53-218ENST00000575207 KLHDC10Q6PID8 442 aa16.97■□□□□ 0.31
VPS53-218ENST00000575207 RAB11FIP2Q7L804 512 aa16.97■□□□□ 0.31
VPS53-218ENST00000575207 KCNK18Q7Z418 384 aa16.97■□□□□ 0.31
VPS53-218ENST00000575207 DSG4Q86SJ6 1040 aa16.97■□□□□ 0.31
VPS53-218ENST00000575207 PRPF39Q86UA1 669 aaKnown RBP16.97■□□□□ 0.31
VPS53-218ENST00000575207 SNX29Q8TEQ0 813 aa16.97■□□□□ 0.31
VPS53-218ENST00000575207 CACTINQ8WUQ7 758 aaKnown RBP16.97■□□□□ 0.31
VPS53-218ENST00000575207 OMDQ99983 421 aa16.97■□□□□ 0.31
VPS53-218ENST00000575207 NME7Q9Y5B8 376 aa16.97■□□□□ 0.31
VPS53-218ENST00000575207 PCDHB11Q9Y5F2 797 aa16.97■□□□□ 0.31
VPS53-218ENST00000575207 CPED1A4D0V7 1026 aa16.96■□□□□ 0.31
VPS53-218ENST00000575207 ANKRD63C9JTQ0 380 aa16.96■□□□□ 0.31
VPS53-218ENST00000575207 SLFN12LQ6IEE8 588 aa16.96■□□□□ 0.31
VPS53-218ENST00000575207 HEATR4Q86WZ0 1026 aa16.96■□□□□ 0.31
VPS53-218ENST00000575207 SLC34A3Q8N130 599 aa16.96■□□□□ 0.31
VPS53-218ENST00000575207 WFIKKN2Q8TEU8 576 aa16.96■□□□□ 0.31
VPS53-218ENST00000575207 KLHDC7BQ96G42 594 aa16.96■□□□□ 0.31
VPS53-218ENST00000575207 LARP6Q9BRS8 491 aaKnown RBP16.96■□□□□ 0.31
VPS53-218ENST00000575207 B3GNT5Q9BYG0 378 aa16.96■□□□□ 0.31
VPS53-218ENST00000575207 TLR8Q9NR97 1041 aaKnown RBP16.96■□□□□ 0.31
VPS53-218ENST00000575207 CLDN5O00501 218 aa16.95■□□□□ 0.3
VPS53-218ENST00000575207 KRT19P08727 400 aa16.95■□□□□ 0.3
VPS53-218ENST00000575207 DLDP09622 509 aaKnown RBP16.95■□□□□ 0.3
VPS53-218ENST00000575207 PTPN1P18031 435 aaKnown RBP16.95■□□□□ 0.3
VPS53-218ENST00000575207 PSMA5P28066 241 aa16.95■□□□□ 0.3
VPS53-218ENST00000575207 HLA-FP30511 346 aa16.95■□□□□ 0.3
VPS53-218ENST00000575207 EHHADHQ08426 723 aa16.95■□□□□ 0.3
VPS53-218ENST00000575207 ORC2Q13416 577 aaPredicted RBP16.95■□□□□ 0.3
VPS53-218ENST00000575207 ADIPOR2Q86V24 386 aa16.95■□□□□ 0.3
VPS53-218ENST00000575207 FAM114A1Q8IWE2 563 aa16.95■□□□□ 0.3
VPS53-218ENST00000575207 OR14C36Q8NHC7 312 aa16.95■□□□□ 0.3
VPS53-218ENST00000575207 GTF3C6Q969F1 213 aa16.95■□□□□ 0.3
VPS53-218ENST00000575207 KCND2Q9NZV8 630 aa16.95■□□□□ 0.3
VPS53-218ENST00000575207 PRRC2CQ9Y520 2896 aaKnown RBP16.95■□□□□ 0.3
VPS53-218ENST00000575207 A0A1W2PQ27 194 aa16.94■□□□□ 0.3
VPS53-218ENST00000575207 A0A1W2PQ64 194 aa16.94■□□□□ 0.3
VPS53-218ENST00000575207 A0A1W2PQC6 194 aa16.94■□□□□ 0.3
VPS53-218ENST00000575207 TISP43B9A030 160 aa16.94■□□□□ 0.3
VPS53-218ENST00000575207 CASC3O15234 703 aaKnown RBP16.94■□□□□ 0.3
VPS53-218ENST00000575207 RNASEH1O60930 286 aaKnown RBP16.94■□□□□ 0.3
VPS53-218ENST00000575207 DTNBO60941 627 aa16.94■□□□□ 0.3
VPS53-218ENST00000575207 CYBBP04839 570 aa16.94■□□□□ 0.3
VPS53-218ENST00000575207 RARGP13631 454 aa16.94■□□□□ 0.3
VPS53-218ENST00000575207 GOT1P17174 413 aa16.94■□□□□ 0.3
VPS53-218ENST00000575207 SPIDRQ14159 915 aa16.94■□□□□ 0.3
VPS53-218ENST00000575207 LACTB2Q53H82 288 aaPredicted RBP16.94■□□□□ 0.3
VPS53-218ENST00000575207 CRTC1Q6UUV9 634 aa16.94■□□□□ 0.3
VPS53-218ENST00000575207 SND1Q7KZF4 910 aaKnown RBP eCLIP16.94■□□□□ 0.3
VPS53-218ENST00000575207 KIAA0907Q7Z7F0 614 aaPredicted RBP16.94■□□□□ 0.3
VPS53-218ENST00000575207 ZFAND4Q86XD8 727 aa16.94■□□□□ 0.3
VPS53-218ENST00000575207 WASF1Q92558 559 aa16.94■□□□□ 0.3
VPS53-218ENST00000575207 ABHD17AQ96GS6 310 aa16.94■□□□□ 0.3
VPS53-218ENST00000575207 CATSPER2Q96P56 530 aa16.94■□□□□ 0.3
VPS53-218ENST00000575207 CAAP1Q9H8G2 361 aa16.94■□□□□ 0.3
VPS53-218ENST00000575207 OSER1Q9NX31 292 aa16.94■□□□□ 0.3
VPS53-218ENST00000575207 SCN8AQ9UQD0 1980 aa16.93■□□□□ 0.3
VPS53-218ENST00000575207 TBC1D3DA0A087WVF3 549 aa16.93■□□□□ 0.3
VPS53-218ENST00000575207 TBC1D3IA0A087WXS9 549 aa16.93■□□□□ 0.3
VPS53-218ENST00000575207 TBC1D3EA0A087X179 549 aa16.93■□□□□ 0.3
VPS53-218ENST00000575207 TBC1D3KA0A087X1G2 549 aa16.93■□□□□ 0.3
VPS53-218ENST00000575207 SLC12A8A0AV02 714 aa16.93■□□□□ 0.3
VPS53-218ENST00000575207 TBC1D3FA6NER0 549 aaPredicted RBP16.93■□□□□ 0.3
VPS53-218ENST00000575207 PRR19A6NJB7 356 aa16.93■□□□□ 0.3
VPS53-218ENST00000575207 TBC1D3LB9A6J9 549 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms