RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 MFHAS1Q9Y4C4 1052 aa24.83■■□□□ 1.57
ATPAF1-213ENST00000574428 HELZP42694 1942 aaKnown RBP24.83■■□□□ 1.56
ATPAF1-213ENST00000574428 E9PAM4 449 aa24.82■■□□□ 1.56
ATPAF1-213ENST00000574428 DAPK3O43293 454 aa24.82■■□□□ 1.56
ATPAF1-213ENST00000574428 GREM1O60565 184 aa24.82■■□□□ 1.56
ATPAF1-213ENST00000574428 PRAMEF12O95522 483 aa24.82■■□□□ 1.56
ATPAF1-213ENST00000574428 LTBRP36941 435 aa24.82■■□□□ 1.56
ATPAF1-213ENST00000574428 TFDP2Q14188 446 aa24.82■■□□□ 1.56
ATPAF1-213ENST00000574428 MANEALQ5VSG8 457 aa24.82■■□□□ 1.56
ATPAF1-213ENST00000574428 RWDD4Q6NW29 188 aaKnown RBP24.82■■□□□ 1.56
ATPAF1-213ENST00000574428 Q7L0L9 218 aa24.82■■□□□ 1.56
ATPAF1-213ENST00000574428 GET4Q7L5D6 327 aaPredicted RBP24.82■■□□□ 1.56
ATPAF1-213ENST00000574428 CHSY1Q86X52 802 aa24.82■■□□□ 1.56
ATPAF1-213ENST00000574428 PRELID2Q8N945 189 aa24.82■■□□□ 1.56
ATPAF1-213ENST00000574428 USP13Q92995 863 aaPredicted RBP24.82■■□□□ 1.56
ATPAF1-213ENST00000574428 PRMT1Q99873 361 aaKnown RBP24.82■■□□□ 1.56
ATPAF1-213ENST00000574428 S1PR5Q9H228 398 aa24.82■■□□□ 1.56
ATPAF1-213ENST00000574428 ETNK2Q9NVF9 386 aa24.82■■□□□ 1.56
ATPAF1-213ENST00000574428 SAE1Q9UBE0 346 aaPredicted RBP24.82■■□□□ 1.56
ATPAF1-213ENST00000574428 GOLGA6L10A0A0M3HER8 536 aa24.82■■□□□ 1.56
ATPAF1-213ENST00000574428 SOBPA7XYQ1 873 aa24.82■■□□□ 1.56
ATPAF1-213ENST00000574428 LEFTY2O00292 366 aa24.82■■□□□ 1.56
ATPAF1-213ENST00000574428 APOL1O14791 398 aa24.82■■□□□ 1.56
ATPAF1-213ENST00000574428 EPHB2P29323 1055 aa24.82■■□□□ 1.56
ATPAF1-213ENST00000574428 HCAR3P49019 387 aa24.82■■□□□ 1.56
ATPAF1-213ENST00000574428 NRG1Q02297 640 aaPredicted RBP24.82■■□□□ 1.56
ATPAF1-213ENST00000574428 MTA1Q13330 715 aa24.82■■□□□ 1.56
ATPAF1-213ENST00000574428 COL19A1Q14993 1142 aa24.82■■□□□ 1.56
ATPAF1-213ENST00000574428 FAM133BQ5BKY9 247 aaKnown RBP24.82■■□□□ 1.56
ATPAF1-213ENST00000574428 SLC9A4Q6AI14 798 aa24.82■■□□□ 1.56
ATPAF1-213ENST00000574428 PLD5Q8N7P1 536 aa24.82■■□□□ 1.56
ATPAF1-213ENST00000574428 SH3RF2Q8TEC5 729 aa24.82■■□□□ 1.56
ATPAF1-213ENST00000574428 MAIP1Q8WWC4 291 aa24.82■■□□□ 1.56
ATPAF1-213ENST00000574428 C1orf54Q8WWF1 131 aa24.82■■□□□ 1.56
ATPAF1-213ENST00000574428 ATG4AQ8WYN0 398 aa24.82■■□□□ 1.56
ATPAF1-213ENST00000574428 SLC6A4P31645 630 aa24.81■■□□□ 1.56
ATPAF1-213ENST00000574428 ZNF135P52742 658 aaPredicted RBP24.81■■□□□ 1.56
ATPAF1-213ENST00000574428 ITIH3Q06033 890 aa24.81■■□□□ 1.56
ATPAF1-213ENST00000574428 CES5AQ6NT32 575 aa24.81■■□□□ 1.56
ATPAF1-213ENST00000574428 FBXL22Q6P050 247 aa24.81■■□□□ 1.56
ATPAF1-213ENST00000574428 NPNTQ6UXI9 565 aa24.81■■□□□ 1.56
ATPAF1-213ENST00000574428 NPAS3Q8IXF0 933 aa24.81■■□□□ 1.56
ATPAF1-213ENST00000574428 ZNF683Q8IZ20 524 aa24.81■■□□□ 1.56
ATPAF1-213ENST00000574428 TBC1D31Q96DN5 1066 aa24.81■■□□□ 1.56
ATPAF1-213ENST00000574428 PABPC5Q96DU9 382 aaKnown RBP24.81■■□□□ 1.56
ATPAF1-213ENST00000574428 MYEOVQ96EZ4 313 aa24.81■■□□□ 1.56
ATPAF1-213ENST00000574428 TDP1Q9NUW8 608 aa24.81■■□□□ 1.56
ATPAF1-213ENST00000574428 PECAM1P16284 738 aaPredicted RBP24.8■■□□□ 1.56
ATPAF1-213ENST00000574428 TACR2P21452 398 aa24.8■■□□□ 1.56
ATPAF1-213ENST00000574428 IRAK1P51617 712 aa24.8■■□□□ 1.56
ATPAF1-213ENST00000574428 RFWD3Q6PCD5 774 aa24.8■■□□□ 1.56
ATPAF1-213ENST00000574428 C1orf228Q6PIY5 440 aa24.8■■□□□ 1.56
ATPAF1-213ENST00000574428 Q6ZNB5 142 aa24.8■■□□□ 1.56
ATPAF1-213ENST00000574428 NOA1Q8NC60 698 aaKnown RBP24.8■■□□□ 1.56
ATPAF1-213ENST00000574428 RIN3Q8TB24 985 aa24.8■■□□□ 1.56
ATPAF1-213ENST00000574428 ZSCAN18Q8TBC5 510 aaPredicted RBP24.8■■□□□ 1.56
ATPAF1-213ENST00000574428 MYLIPQ8WY64 445 aa24.8■■□□□ 1.56
ATPAF1-213ENST00000574428 ANKRD7Q92527 254 aa24.8■■□□□ 1.56
ATPAF1-213ENST00000574428 AZIN2Q96A70 460 aa24.8■■□□□ 1.56
ATPAF1-213ENST00000574428 ZMYM5Q9UJ78 669 aa24.8■■□□□ 1.56
ATPAF1-213ENST00000574428 LSM7Q9UK45 103 aaKnown RBP24.8■■□□□ 1.56
ATPAF1-213ENST00000574428 SH3BP1Q9Y3L3 701 aa24.8■■□□□ 1.56
ATPAF1-213ENST00000574428 ERCC2P18074 760 aa24.8■■□□□ 1.56
ATPAF1-213ENST00000574428 ELF2Q15723 593 aa24.8■■□□□ 1.56
ATPAF1-213ENST00000574428 ATAT1Q5SQI0 421 aa24.8■■□□□ 1.56
ATPAF1-213ENST00000574428 NCBP2-AS2Q69YL0 99 aa24.8■■□□□ 1.56
ATPAF1-213ENST00000574428 LRRC31Q6UY01 552 aa24.8■■□□□ 1.56
ATPAF1-213ENST00000574428 ARID3BQ8IVW6 561 aaPredicted RBP24.8■■□□□ 1.56
ATPAF1-213ENST00000574428 KLHL7Q8IXQ5 586 aa24.8■■□□□ 1.56
ATPAF1-213ENST00000574428 FGF13Q92913 245 aa24.8■■□□□ 1.56
ATPAF1-213ENST00000574428 IGSF8Q969P0 613 aa24.8■■□□□ 1.56
ATPAF1-213ENST00000574428 MSLNLQ96KJ4 702 aa24.8■■□□□ 1.56
ATPAF1-213ENST00000574428 DCLK3Q9C098 648 aa24.8■■□□□ 1.56
ATPAF1-213ENST00000574428 MPP6Q9NZW5 540 aa24.8■■□□□ 1.56
ATPAF1-213ENST00000574428 STIM2Q9P246 746 aa24.8■■□□□ 1.56
ATPAF1-213ENST00000574428 TRDMT1O14717 391 aaKnown RBP24.79■■□□□ 1.56
ATPAF1-213ENST00000574428 DCLK1O15075 740 aa24.79■■□□□ 1.56
ATPAF1-213ENST00000574428 HOXC13P31276 330 aa24.79■■□□□ 1.56
ATPAF1-213ENST00000574428 LGI2Q8N0V4 545 aa24.79■■□□□ 1.56
ATPAF1-213ENST00000574428 RPGRIP1Q96KN7 1286 aa24.79■■□□□ 1.56
ATPAF1-213ENST00000574428 DDX47Q9H0S4 455 aaKnown RBP24.79■■□□□ 1.56
ATPAF1-213ENST00000574428 HEY1Q9Y5J3 304 aa24.79■■□□□ 1.56
ATPAF1-213ENST00000574428 EFCAB8A8MWE9 144 aa24.78■■□□□ 1.56
ATPAF1-213ENST00000574428 F5H5T6 163 aa24.78■■□□□ 1.56
ATPAF1-213ENST00000574428 APOC4-APOC2K7ER74 178 aa24.78■■□□□ 1.56
ATPAF1-213ENST00000574428 MAP3K6O95382 1288 aa24.78■■□□□ 1.56
ATPAF1-213ENST00000574428 APOC2P02655 101 aa24.78■■□□□ 1.56
ATPAF1-213ENST00000574428 HTR7P34969 479 aa24.78■■□□□ 1.56
ATPAF1-213ENST00000574428 OTUD4Q01804 1114 aaKnown RBP24.78■■□□□ 1.56
ATPAF1-213ENST00000574428 GBE1Q04446 702 aa24.78■■□□□ 1.56
ATPAF1-213ENST00000574428 SNX1Q13596 522 aa24.78■■□□□ 1.56
ATPAF1-213ENST00000574428 ERCC6LQ2NKX8 1250 aa24.78■■□□□ 1.56
ATPAF1-213ENST00000574428 ADGRF1Q5T601 910 aa24.78■■□□□ 1.56
ATPAF1-213ENST00000574428 ACBD5Q5T8D3 534 aaPredicted RBP24.78■■□□□ 1.56
ATPAF1-213ENST00000574428 HTR3DQ70Z44 454 aa24.78■■□□□ 1.56
ATPAF1-213ENST00000574428 DDX42Q86XP3 938 aaKnown RBP eCLIP24.78■■□□□ 1.56
ATPAF1-213ENST00000574428 ACTL9Q8TC94 416 aa24.78■■□□□ 1.56
ATPAF1-213ENST00000574428 RPRD1AQ96P16 312 aaPredicted RBP24.78■■□□□ 1.56
ATPAF1-213ENST00000574428 KRT12Q99456 494 aa24.78■■□□□ 1.56
ATPAF1-213ENST00000574428 CDX2Q99626 313 aaPredicted RBP24.78■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms