RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 CPNE1Q99829 537 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 PRDM16Q9HAZ2 1276 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 EIF2B3Q9NR50 452 aaKnown RBP11.05□□□□□ -0.64
CCDC40-207ENST00000572253 FAM49BQ9NUQ9 324 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 SEPT10Q9P0V9 454 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 SOWAHBA6NEL2 793 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 DCXO43602 365 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 PEX1O43933 1283 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 H2AFYO75367 372 aaKnown RBP11.05□□□□□ -0.64
CCDC40-207ENST00000572253 ITGAXP20702 1163 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 HARS2P49590 506 aaKnown RBP11.05□□□□□ -0.64
CCDC40-207ENST00000572253 CHN2P52757 468 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 AQP4P55087 323 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 IGBP1P78318 339 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 CRADDP78560 199 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 LAMB3Q13751 1172 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 RARS2Q5T160 578 aaKnown RBP11.05□□□□□ -0.64
CCDC40-207ENST00000572253 PPP1R26Q5T8A7 1209 aaPredicted RBP11.05□□□□□ -0.64
CCDC40-207ENST00000572253 TMEM110Q86TL2 294 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 ACOT1Q86TX2 421 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 NT5DC4Q86YG4 428 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 RIOX2Q8IUF8 465 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 C12orf29Q8N999 325 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 CATSPER1Q8NEC5 780 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 KIF12Q96FN5 646 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 RTKNQ9BST9 563 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 GGA3Q9NZ52 723 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 GJA3Q9Y6H8 435 aa11.05□□□□□ -0.64
CCDC40-207ENST00000572253 STAU1O95793 577 aaKnown RBP11.04□□□□□ -0.64
CCDC40-207ENST00000572253 ALOX15P16050 662 aaPredicted RBP11.04□□□□□ -0.64
CCDC40-207ENST00000572253 C16orf89Q6UX73 402 aa11.04□□□□□ -0.64
CCDC40-207ENST00000572253 APOBEC3FQ8IUX4 373 aaKnown RBP11.04□□□□□ -0.64
CCDC40-207ENST00000572253 UNC5BQ8IZJ1 945 aa11.04□□□□□ -0.64
CCDC40-207ENST00000572253 PGBD4Q96DM1 585 aa11.04□□□□□ -0.64
CCDC40-207ENST00000572253 LRGUKQ96M69 825 aa11.04□□□□□ -0.64
CCDC40-207ENST00000572253 MINDY3Q9H8M7 445 aa11.04□□□□□ -0.64
CCDC40-207ENST00000572253 ADAMTS6Q9UKP5 1117 aa11.04□□□□□ -0.64
CCDC40-207ENST00000572253 SF3B1O75533 1304 aaKnown RBP eCLIP11.04□□□□□ -0.64
CCDC40-207ENST00000572253 BRWD3Q6RI45 1802 aa11.04□□□□□ -0.64
CCDC40-207ENST00000572253 PAPSS1O43252 624 aaPredicted RBP11.04□□□□□ -0.64
CCDC40-207ENST00000572253 THRAP10827 490 aa11.04□□□□□ -0.64
CCDC40-207ENST00000572253 GMPSP49915 693 aaPredicted RBP11.04□□□□□ -0.64
CCDC40-207ENST00000572253 SPANXN3Q5MJ09 141 aa11.04□□□□□ -0.64
CCDC40-207ENST00000572253 CELF3Q5SZQ8 465 aaKnown RBP11.04□□□□□ -0.64
CCDC40-207ENST00000572253 METTL21CQ5VZV1 264 aa11.04□□□□□ -0.64
CCDC40-207ENST00000572253 HPS6Q86YV9 775 aa11.04□□□□□ -0.64
CCDC40-207ENST00000572253 TMEM216Q9P0N5 145 aa11.04□□□□□ -0.64
CCDC40-207ENST00000572253 C6orf203Q9P0P8 240 aaPredicted RBP11.04□□□□□ -0.64
CCDC40-207ENST00000572253 PCDHB12Q9Y5F1 795 aa11.04□□□□□ -0.64
CCDC40-207ENST00000572253 TMEM114B3SHH9 223 aa11.04□□□□□ -0.64
CCDC40-207ENST00000572253 RNF103O00237 685 aa11.04□□□□□ -0.64
CCDC40-207ENST00000572253 ZNF189O75820 626 aaPredicted RBP11.04□□□□□ -0.64
CCDC40-207ENST00000572253 PFKMP08237 780 aa11.04□□□□□ -0.64
CCDC40-207ENST00000572253 PABPC4LP0CB38 370 aaKnown RBP11.04□□□□□ -0.64
CCDC40-207ENST00000572253 BTKQ06187 659 aa11.04□□□□□ -0.64
CCDC40-207ENST00000572253 SLC10A2Q12908 348 aaPredicted RBP11.04□□□□□ -0.64
CCDC40-207ENST00000572253 KLF10Q13118 480 aa11.04□□□□□ -0.64
CCDC40-207ENST00000572253 PDK1Q15118 436 aa11.04□□□□□ -0.64
CCDC40-207ENST00000572253 SLC10A6Q3KNW5 377 aa11.04□□□□□ -0.64
CCDC40-207ENST00000572253 HSDL1Q3SXM5 330 aa11.04□□□□□ -0.64
CCDC40-207ENST00000572253 LRRC23Q53EV4 343 aaPredicted RBP11.04□□□□□ -0.64
CCDC40-207ENST00000572253 ARHGAP22Q7Z5H3 698 aa11.04□□□□□ -0.64
CCDC40-207ENST00000572253 CCNYQ8ND76 341 aa11.04□□□□□ -0.64
CCDC40-207ENST00000572253 AZIN2Q96A70 460 aa11.04□□□□□ -0.64
CCDC40-207ENST00000572253 KCTD15Q96SI1 283 aaPredicted RBP11.04□□□□□ -0.64
CCDC40-207ENST00000572253 SORT1Q99523 831 aa11.04□□□□□ -0.64
CCDC40-207ENST00000572253 NFKBIZQ9BYH8 718 aa11.04□□□□□ -0.64
CCDC40-207ENST00000572253 CDH19Q9H159 772 aa11.04□□□□□ -0.64
CCDC40-207ENST00000572253 DTLQ9NZJ0 730 aa11.04□□□□□ -0.64
CCDC40-207ENST00000572253 SLC17A6Q9P2U8 582 aa11.04□□□□□ -0.64
CCDC40-207ENST00000572253 AKT3Q9Y243 479 aa11.04□□□□□ -0.64
CCDC40-207ENST00000572253 RPS6KL1Q9Y6S9 549 aa11.04□□□□□ -0.64
CCDC40-207ENST00000572253 DOCK1Q14185 1865 aa11.04□□□□□ -0.64
CCDC40-207ENST00000572253 ZBTB42B2RXF5 422 aa11.03□□□□□ -0.64
CCDC40-207ENST00000572253 E9PBE3 544 aa11.03□□□□□ -0.64
CCDC40-207ENST00000572253 CREB3O43889 395 aa11.03□□□□□ -0.64
CCDC40-207ENST00000572253 KLHL41O60662 606 aa11.03□□□□□ -0.64
CCDC40-207ENST00000572253 GSRP00390 522 aa11.03□□□□□ -0.64
CCDC40-207ENST00000572253 ADORA2AP29274 412 aa11.03□□□□□ -0.64
CCDC40-207ENST00000572253 PRAMEF18Q5VWM3 479 aa11.03□□□□□ -0.64
CCDC40-207ENST00000572253 LBX2Q6XYB7 198 aa11.03□□□□□ -0.64
CCDC40-207ENST00000572253 SETD3Q86TU7 594 aaPredicted RBP11.03□□□□□ -0.64
CCDC40-207ENST00000572253 C7orf31Q8N865 590 aa11.03□□□□□ -0.64
CCDC40-207ENST00000572253 OR6B3Q8NGW1 331 aa11.03□□□□□ -0.64
CCDC40-207ENST00000572253 NAT14Q8WUY8 206 aa11.03□□□□□ -0.64
CCDC40-207ENST00000572253 NCSTNQ92542 709 aa11.03□□□□□ -0.64
CCDC40-207ENST00000572253 PDZD7Q9H5P4 517 aa11.03□□□□□ -0.64
CCDC40-207ENST00000572253 PRPF19Q9UMS4 504 aaKnown RBP11.03□□□□□ -0.64
CCDC40-207ENST00000572253 PSMD13Q9UNM6 376 aa11.03□□□□□ -0.64
CCDC40-207ENST00000572253 SNX9Q9Y5X1 595 aa11.03□□□□□ -0.64
CCDC40-207ENST00000572253 ALDH1A3P47895 512 aa11.03□□□□□ -0.64
CCDC40-207ENST00000572253 FAM187BQ17R55 369 aa11.03□□□□□ -0.64
CCDC40-207ENST00000572253 VWA5B1Q5TIE3 1220 aa11.03□□□□□ -0.64
CCDC40-207ENST00000572253 TTC30AQ86WT1 665 aa11.03□□□□□ -0.64
CCDC40-207ENST00000572253 TMEM130Q8N3G9 435 aa11.03□□□□□ -0.64
CCDC40-207ENST00000572253 CERS2Q96G23 380 aa11.03□□□□□ -0.64
CCDC40-207ENST00000572253 PPP1R16BQ96T49 567 aa11.03□□□□□ -0.64
CCDC40-207ENST00000572253 RNPEPQ9H4A4 650 aa11.03□□□□□ -0.64
CCDC40-207ENST00000572253 TCF7L2Q9NQB0 619 aa11.03□□□□□ -0.64
CCDC40-207ENST00000572253 SNX15Q9NRS6 342 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms