RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 TBC1D3EA0A087X179 549 aa11.56□□□□□ -0.56
VPS53-207ENST00000570510 TBC1D3KA0A087X1G2 549 aa11.56□□□□□ -0.56
VPS53-207ENST00000570510 SLC12A8A0AV02 714 aa11.56□□□□□ -0.56
VPS53-207ENST00000570510 TBC1D3FA6NER0 549 aaPredicted RBP11.56□□□□□ -0.56
VPS53-207ENST00000570510 TBC1D3LB9A6J9 549 aa11.56□□□□□ -0.56
VPS53-207ENST00000570510 OPA1O60313 960 aa11.56□□□□□ -0.56
VPS53-207ENST00000570510 STAU1O95793 577 aaKnown RBP11.56□□□□□ -0.56
VPS53-207ENST00000570510 HSP90AA1P07900 732 aaKnown RBP11.56□□□□□ -0.56
VPS53-207ENST00000570510 TBC1D3HP0C7X1 549 aa11.56□□□□□ -0.56
VPS53-207ENST00000570510 ALPPL2P10696 532 aa11.56□□□□□ -0.56
VPS53-207ENST00000570510 MYF5P13349 255 aa11.56□□□□□ -0.56
VPS53-207ENST00000570510 HARS2P49590 506 aaKnown RBP11.56□□□□□ -0.56
VPS53-207ENST00000570510 CYP2J2P51589 502 aa11.56□□□□□ -0.56
VPS53-207ENST00000570510 CCR5P51681 352 aa11.56□□□□□ -0.56
VPS53-207ENST00000570510 INHBCP55103 352 aa11.56□□□□□ -0.56
VPS53-207ENST00000570510 PDE4CQ08493 712 aa11.56□□□□□ -0.56
VPS53-207ENST00000570510 STAT4Q14765 748 aa11.56□□□□□ -0.56
VPS53-207ENST00000570510 C3orf38Q5JPI3 329 aa11.56□□□□□ -0.56
VPS53-207ENST00000570510 MBLAC2Q68D91 279 aa11.56□□□□□ -0.56
VPS53-207ENST00000570510 TBC1D3GQ6DHY5 549 aa11.56□□□□□ -0.56
VPS53-207ENST00000570510 TBC1D3CQ6IPX1 549 aa11.56□□□□□ -0.56
VPS53-207ENST00000570510 GPRIN1Q7Z2K8 1008 aa11.56□□□□□ -0.56
VPS53-207ENST00000570510 PRPF39Q86UA1 669 aaKnown RBP11.56□□□□□ -0.56
VPS53-207ENST00000570510 CCDC65Q8IXS2 484 aa11.56□□□□□ -0.56
VPS53-207ENST00000570510 TBC1D3Q8IZP1 549 aaPredicted RBP11.56□□□□□ -0.56
VPS53-207ENST00000570510 CPXM2Q8N436 756 aa11.56□□□□□ -0.56
VPS53-207ENST00000570510 TMA16Q96EY4 203 aaKnown RBP11.56□□□□□ -0.56
VPS53-207ENST00000570510 P2RY11Q96G91 374 aa11.56□□□□□ -0.56
VPS53-207ENST00000570510 COL12A1Q99715 3063 aa11.56□□□□□ -0.56
VPS53-207ENST00000570510 NEUROG2Q9H2A3 272 aa11.56□□□□□ -0.56
VPS53-207ENST00000570510 MARCH2Q9P0N8 246 aa11.56□□□□□ -0.56
VPS53-207ENST00000570510 GGA2Q9UJY4 613 aa11.56□□□□□ -0.56
VPS53-207ENST00000570510 A0A1W2PR77 199 aa11.55□□□□□ -0.56
VPS53-207ENST00000570510 MID1O15344 667 aa11.55□□□□□ -0.56
VPS53-207ENST00000570510 FFAR2O15552 330 aa11.55□□□□□ -0.56
VPS53-207ENST00000570510 SFTPCP11686 197 aa11.55□□□□□ -0.56
VPS53-207ENST00000570510 PABPC1P11940 636 aaKnown RBP11.55□□□□□ -0.56
VPS53-207ENST00000570510 GP1BBP13224 206 aa11.55□□□□□ -0.56
VPS53-207ENST00000570510 HLA-FP30511 346 aa11.55□□□□□ -0.56
VPS53-207ENST00000570510 ZNF445P59923 1031 aa11.55□□□□□ -0.56
VPS53-207ENST00000570510 NFKB2Q00653 900 aa11.55□□□□□ -0.56
VPS53-207ENST00000570510 CYP24A1Q07973 514 aa11.55□□□□□ -0.56
VPS53-207ENST00000570510 PSMD6Q15008 389 aa11.55□□□□□ -0.56
VPS53-207ENST00000570510 CST6Q15828 149 aa11.55□□□□□ -0.56
VPS53-207ENST00000570510 PROX2Q3B8N5 592 aa11.55□□□□□ -0.56
VPS53-207ENST00000570510 XKR5Q6UX68 686 aa11.55□□□□□ -0.56
VPS53-207ENST00000570510 USP53Q70EK8 1073 aa11.55□□□□□ -0.56
VPS53-207ENST00000570510 SND1Q7KZF4 910 aaKnown RBP eCLIP11.55□□□□□ -0.56
VPS53-207ENST00000570510 MMAAQ8IVH4 418 aaKnown RBP11.55□□□□□ -0.56
VPS53-207ENST00000570510 CCDC117Q8IWD4 279 aaPredicted RBP11.55□□□□□ -0.56
VPS53-207ENST00000570510 ARHGAP18Q8N392 663 aa11.55□□□□□ -0.56
VPS53-207ENST00000570510 ARL14Q8N4G2 192 aa11.55□□□□□ -0.56
VPS53-207ENST00000570510 C12orf29Q8N999 325 aa11.55□□□□□ -0.56
VPS53-207ENST00000570510 MFSD2AQ8NA29 543 aa11.55□□□□□ -0.56
VPS53-207ENST00000570510 RBBP8NLQ8NC74 664 aaPredicted RBP11.55□□□□□ -0.56
VPS53-207ENST00000570510 HPS3Q969F9 1004 aa11.55□□□□□ -0.56
VPS53-207ENST00000570510 DNAJC19Q96DA6 116 aa11.55□□□□□ -0.56
VPS53-207ENST00000570510 EPSTI1Q96J88 318 aa11.55□□□□□ -0.56
VPS53-207ENST00000570510 ZNF396Q96N95 335 aaPredicted RBP11.55□□□□□ -0.56
VPS53-207ENST00000570510 RSPH9Q9H1X1 276 aaPredicted RBP11.55□□□□□ -0.56
VPS53-207ENST00000570510 EBF2Q9HAK2 575 aa11.55□□□□□ -0.56
VPS53-207ENST00000570510 CLIC5Q9NZA1 410 aa11.55□□□□□ -0.56
VPS53-207ENST00000570510 FZD4Q9ULV1 537 aa11.55□□□□□ -0.56
VPS53-207ENST00000570510 SATB2Q9UPW6 733 aa11.55□□□□□ -0.56
VPS53-207ENST00000570510 MTMR6Q9Y217 621 aa11.55□□□□□ -0.56
VPS53-207ENST00000570510 PTPN13Q12923 2485 aa11.55□□□□□ -0.56
VPS53-207ENST00000570510 MYH10P35580 1976 aa11.54□□□□□ -0.56
VPS53-207ENST00000570510 VPS37CA5D8V6 355 aaPredicted RBP11.54□□□□□ -0.56
VPS53-207ENST00000570510 TRIM38O00635 465 aa11.54□□□□□ -0.56
VPS53-207ENST00000570510 TERTO14746 1132 aaKnown RBP11.54□□□□□ -0.56
VPS53-207ENST00000570510 WNT9AO14904 365 aa11.54□□□□□ -0.56
VPS53-207ENST00000570510 GJB6O95452 261 aa11.54□□□□□ -0.56
VPS53-207ENST00000570510 HOXD9P28356 352 aaPredicted RBP11.54□□□□□ -0.56
VPS53-207ENST00000570510 SLC8A1P32418 973 aa11.54□□□□□ -0.56
VPS53-207ENST00000570510 DUSP3P51452 185 aaPredicted RBP11.54□□□□□ -0.56
VPS53-207ENST00000570510 NDST1P52848 882 aa11.54□□□□□ -0.56
VPS53-207ENST00000570510 ASIC1P78348 528 aa11.54□□□□□ -0.56
VPS53-207ENST00000570510 OVGP1Q12889 678 aa11.54□□□□□ -0.56
VPS53-207ENST00000570510 UBAP2LQ14157 1087 aaKnown RBP11.54□□□□□ -0.56
VPS53-207ENST00000570510 KCNJ12Q14500 433 aa11.54□□□□□ -0.56
VPS53-207ENST00000570510 BMT2Q1RMZ1 405 aa11.54□□□□□ -0.56
VPS53-207ENST00000570510 C4orf17Q53FE4 359 aa11.54□□□□□ -0.56
VPS53-207ENST00000570510 NAPEPLDQ6IQ20 393 aa11.54□□□□□ -0.56
VPS53-207ENST00000570510 CLEC20AQ6ZU45 233 aa11.54□□□□□ -0.56
VPS53-207ENST00000570510 CCDC186Q7Z3E2 898 aa11.54□□□□□ -0.56
VPS53-207ENST00000570510 ZNF276Q8N554 614 aa11.54□□□□□ -0.56
VPS53-207ENST00000570510 MAPK15Q8TD08 544 aa11.54□□□□□ -0.56
VPS53-207ENST00000570510 PLD4Q96BZ4 506 aa11.54□□□□□ -0.56
VPS53-207ENST00000570510 CYFIP2Q96F07 1278 aa11.54□□□□□ -0.56
VPS53-207ENST00000570510 CCNL2Q96S94 520 aaPredicted RBP11.54□□□□□ -0.56
VPS53-207ENST00000570510 FGFBP2Q9BYJ0 223 aa11.54□□□□□ -0.56
VPS53-207ENST00000570510 XYLT2Q9H1B5 865 aa11.54□□□□□ -0.56
VPS53-207ENST00000570510 ASCL3Q9NQ33 180 aa11.54□□□□□ -0.56
VPS53-207ENST00000570510 IGSF5Q9NSI5 407 aa11.54□□□□□ -0.56
VPS53-207ENST00000570510 SERGEFQ9UGK8 458 aa11.54□□□□□ -0.56
VPS53-207ENST00000570510 CEP83Q9Y592 693 aa11.54□□□□□ -0.56
VPS53-207ENST00000570510 PAXBP1Q9Y5B6 917 aa11.54□□□□□ -0.56
VPS53-207ENST00000570510 SRPRBQ9Y5M8 271 aaKnown RBP11.54□□□□□ -0.56
VPS53-207ENST00000570510 UNC79Q9P2D8 2635 aa11.54□□□□□ -0.56
VPS53-207ENST00000570510 CKAP5Q14008 2032 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms