RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 RASSF8Q8NHQ8 419 aa18.89■□□□□ 0.61
CLK3-227ENST00000570296 ABCG4Q9H172 646 aa18.89■□□□□ 0.61
CLK3-227ENST00000570296 NEUROG2Q9H2A3 272 aa18.89■□□□□ 0.61
CLK3-227ENST00000570296 ATXN7L1Q9ULK2 861 aaPredicted RBP18.89■□□□□ 0.61
CLK3-227ENST00000570296 KIF26BQ2KJY2 2108 aa18.89■□□□□ 0.61
CLK3-227ENST00000570296 ICE1Q9Y2F5 2266 aa18.89■□□□□ 0.61
CLK3-227ENST00000570296 A0A1W2PNU3 283 aaPredicted RBP18.88■□□□□ 0.61
CLK3-227ENST00000570296 SDC3O75056 442 aa18.88■□□□□ 0.61
CLK3-227ENST00000570296 ATP5BP06576 529 aaKnown RBP18.88■□□□□ 0.61
CLK3-227ENST00000570296 HOXD9P28356 352 aaPredicted RBP18.88■□□□□ 0.61
CLK3-227ENST00000570296 MAPK8IP2Q13387 824 aaPredicted RBP18.88■□□□□ 0.61
CLK3-227ENST00000570296 GPRIN1Q7Z2K8 1008 aa18.88■□□□□ 0.61
CLK3-227ENST00000570296 CLEC14AQ86T13 490 aa18.88■□□□□ 0.61
CLK3-227ENST00000570296 CBWD2Q8IUF1 395 aa18.88■□□□□ 0.61
CLK3-227ENST00000570296 AHI1Q8N157 1196 aa18.88■□□□□ 0.61
CLK3-227ENST00000570296 SLC25A45Q8N413 288 aa18.88■□□□□ 0.61
CLK3-227ENST00000570296 DDX51Q8N8A6 666 aaKnown RBP eCLIP18.88■□□□□ 0.61
CLK3-227ENST00000570296 PSMG3-AS1Q96PY0 264 aa18.88■□□□□ 0.61
CLK3-227ENST00000570296 OLFML3Q9NRN5 406 aa18.88■□□□□ 0.61
CLK3-227ENST00000570296 TBC1D7Q9P0N9 293 aa18.88■□□□□ 0.61
CLK3-227ENST00000570296 NAGPAQ9UK23 515 aa18.88■□□□□ 0.61
CLK3-227ENST00000570296 MAN2B2Q9Y2E5 1009 aa18.88■□□□□ 0.61
CLK3-227ENST00000570296 CENPEQ02224 2701 aa18.88■□□□□ 0.61
CLK3-227ENST00000570296 COL27A1Q8IZC6 1860 aaPredicted RBP18.88■□□□□ 0.61
CLK3-227ENST00000570296 A0A1W2PP55 124 aa18.87■□□□□ 0.61
CLK3-227ENST00000570296 LATO43561 262 aa18.87■□□□□ 0.61
CLK3-227ENST00000570296 TDRD6O60522 2096 aaKnown RBP18.87■□□□□ 0.61
CLK3-227ENST00000570296 RNASEH2AO75792 299 aaKnown RBP18.87■□□□□ 0.61
CLK3-227ENST00000570296 ATICP31939 592 aa18.87■□□□□ 0.61
CLK3-227ENST00000570296 DUSP3P51452 185 aaPredicted RBP18.87■□□□□ 0.61
CLK3-227ENST00000570296 CASP5P51878 434 aa18.87■□□□□ 0.61
CLK3-227ENST00000570296 CST6Q15828 149 aa18.87■□□□□ 0.61
CLK3-227ENST00000570296 MPPE1Q53F39 396 aa18.87■□□□□ 0.61
CLK3-227ENST00000570296 USP53Q70EK8 1073 aa18.87■□□□□ 0.61
CLK3-227ENST00000570296 KIAA0907Q7Z7F0 614 aaPredicted RBP18.87■□□□□ 0.61
CLK3-227ENST00000570296 DENND1CQ8IV53 801 aa18.87■□□□□ 0.61
CLK3-227ENST00000570296 SLC2A14Q8TDB8 520 aa18.87■□□□□ 0.61
CLK3-227ENST00000570296 EXTL1Q92935 676 aa18.87■□□□□ 0.61
CLK3-227ENST00000570296 SGF29Q96ES7 293 aa18.87■□□□□ 0.61
CLK3-227ENST00000570296 PRR11Q96HE9 360 aaPredicted RBP18.87■□□□□ 0.61
CLK3-227ENST00000570296 SMYD3Q9H7B4 428 aa18.87■□□□□ 0.61
CLK3-227ENST00000570296 USP29Q9HBJ7 922 aa18.87■□□□□ 0.61
CLK3-227ENST00000570296 KIAA1586Q9HCI6 787 aa18.87■□□□□ 0.61
CLK3-227ENST00000570296 CLIC5Q9NZA1 410 aa18.87■□□□□ 0.61
CLK3-227ENST00000570296 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.87■□□□□ 0.61
CLK3-227ENST00000570296 MID1O15344 667 aa18.86■□□□□ 0.61
CLK3-227ENST00000570296 EFSO43281 561 aa18.86■□□□□ 0.61
CLK3-227ENST00000570296 PPFIA2O75334 1257 aa18.86■□□□□ 0.61
CLK3-227ENST00000570296 GJB6O95452 261 aa18.86■□□□□ 0.61
CLK3-227ENST00000570296 RALAP11233 206 aa18.86■□□□□ 0.61
CLK3-227ENST00000570296 CCDC130P13994 396 aa18.86■□□□□ 0.61
CLK3-227ENST00000570296 AFMP43652 599 aa18.86■□□□□ 0.61
CLK3-227ENST00000570296 CCR10P46092 362 aa18.86■□□□□ 0.61
CLK3-227ENST00000570296 HARS2P49590 506 aaKnown RBP18.86■□□□□ 0.61
CLK3-227ENST00000570296 NEK4P51957 841 aa18.86■□□□□ 0.61
CLK3-227ENST00000570296 TMC6Q7Z403 805 aa18.86■□□□□ 0.61
CLK3-227ENST00000570296 ARL14Q8N4G2 192 aa18.86■□□□□ 0.61
CLK3-227ENST00000570296 SYAP1Q96A49 352 aaPredicted RBP18.86■□□□□ 0.61
CLK3-227ENST00000570296 OMDQ99983 421 aa18.86■□□□□ 0.61
CLK3-227ENST00000570296 XYLT2Q9H1B5 865 aa18.86■□□□□ 0.61
CLK3-227ENST00000570296 PNPLA8Q9NP80 782 aa18.86■□□□□ 0.61
CLK3-227ENST00000570296 ABCB8Q9NUT2 735 aa18.86■□□□□ 0.61
CLK3-227ENST00000570296 EVA1BQ9NVM1 165 aa18.86■□□□□ 0.61
CLK3-227ENST00000570296 HSPBP1Q9NZL4 362 aa18.86■□□□□ 0.61
CLK3-227ENST00000570296 RASAL2Q9UJF2 1139 aa18.86■□□□□ 0.61
CLK3-227ENST00000570296 GGA2Q9UJY4 613 aa18.86■□□□□ 0.61
CLK3-227ENST00000570296 HHLA1C9JL84 531 aa18.85■□□□□ 0.61
CLK3-227ENST00000570296 HMBSP08397 361 aa18.85■□□□□ 0.61
CLK3-227ENST00000570296 FAM87AP0C7U9 286 aa18.85■□□□□ 0.61
CLK3-227ENST00000570296 FAM200BP0CF97 657 aa18.85■□□□□ 0.61
CLK3-227ENST00000570296 DLATP10515 647 aaKnown RBP18.85■□□□□ 0.61
CLK3-227ENST00000570296 PABPC1P11940 636 aaKnown RBP18.85■□□□□ 0.61
CLK3-227ENST00000570296 TNNI1P19237 187 aa18.85■□□□□ 0.61
CLK3-227ENST00000570296 DGKAP23743 735 aa18.85■□□□□ 0.61
CLK3-227ENST00000570296 NUDT1P36639 197 aa18.85■□□□□ 0.61
CLK3-227ENST00000570296 MYL6P60660 151 aa18.85■□□□□ 0.61
CLK3-227ENST00000570296 TRPC3Q13507 836 aa18.85■□□□□ 0.61
CLK3-227ENST00000570296 MBLAC2Q68D91 279 aa18.85■□□□□ 0.61
CLK3-227ENST00000570296 CCDC186Q7Z3E2 898 aa18.85■□□□□ 0.61
CLK3-227ENST00000570296 SCD5Q86SK9 330 aa18.85■□□□□ 0.61
CLK3-227ENST00000570296 ACOT1Q86TX2 421 aa18.85■□□□□ 0.61
CLK3-227ENST00000570296 ZC3H3Q8IXZ2 948 aaKnown RBP18.85■□□□□ 0.61
CLK3-227ENST00000570296 MAPK15Q8TD08 544 aa18.85■□□□□ 0.61
CLK3-227ENST00000570296 CGRRF1Q99675 332 aa18.85■□□□□ 0.61
CLK3-227ENST00000570296 C2CD3Q4AC94 2353 aa18.84■□□□□ 0.61
CLK3-227ENST00000570296 ADPRHP54922 357 aa18.84■□□□□ 0.61
CLK3-227ENST00000570296 ZNF445P59923 1031 aa18.84■□□□□ 0.61
CLK3-227ENST00000570296 BMT2Q1RMZ1 405 aa18.84■□□□□ 0.61
CLK3-227ENST00000570296 SND1Q7KZF4 910 aaKnown RBP eCLIP18.84■□□□□ 0.61
CLK3-227ENST00000570296 ATXN7L3BQ96GX2 97 aa18.84■□□□□ 0.61
CLK3-227ENST00000570296 OSBPL2Q9H1P3 480 aa18.84■□□□□ 0.61
CLK3-227ENST00000570296 VRTNQ9H8Y1 702 aa18.84■□□□□ 0.61
CLK3-227ENST00000570296 DOCK9Q9BZ29 2069 aa18.84■□□□□ 0.61
CLK3-227ENST00000570296 NYNRINQ9P2P1 1898 aaKnown RBP18.84■□□□□ 0.61
CLK3-227ENST00000570296 FFAR2O15552 330 aa18.83■□□□□ 0.6
CLK3-227ENST00000570296 SIN3BO75182 1162 aa18.83■□□□□ 0.6
CLK3-227ENST00000570296 ALPPL2P10696 532 aa18.83■□□□□ 0.6
CLK3-227ENST00000570296 GOT1P17174 413 aa18.83■□□□□ 0.6
CLK3-227ENST00000570296 POLR2EP19388 210 aaKnown RBP18.83■□□□□ 0.6
CLK3-227ENST00000570296 LONP1P36776 959 aaKnown RBP18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms