RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 GAS2L3Q86XJ1 694 aa14.48□□□□□ -0.09
CLN3-235ENST00000568497 FMNL3Q8IVF7 1028 aa14.48□□□□□ -0.09
CLN3-235ENST00000568497 DEFB119Q8N690 84 aa14.48□□□□□ -0.09
CLN3-235ENST00000568497 CEP76Q8TAP6 659 aa14.48□□□□□ -0.09
CLN3-235ENST00000568497 OVCA2Q8WZ82 227 aa14.48□□□□□ -0.09
CLN3-235ENST00000568497 BAP1Q92560 729 aa14.48□□□□□ -0.09
CLN3-235ENST00000568497 FAM149B1Q96BN6 582 aa14.48□□□□□ -0.09
CLN3-235ENST00000568497 PPP1R13BQ96KQ4 1090 aa14.48□□□□□ -0.09
CLN3-235ENST00000568497 DCBLD2Q96PD2 775 aa14.48□□□□□ -0.09
CLN3-235ENST00000568497 UBXN6Q9BZV1 441 aa14.48□□□□□ -0.09
CLN3-235ENST00000568497 XPO4Q9C0E2 1151 aaKnown RBP14.48□□□□□ -0.09
CLN3-235ENST00000568497 FAM124BQ9H5Z6 455 aaPredicted RBP14.48□□□□□ -0.09
CLN3-235ENST00000568497 CYLDQ9NQC7 956 aa14.48□□□□□ -0.09
CLN3-235ENST00000568497 COX16Q9P0S2 106 aa14.48□□□□□ -0.09
CLN3-235ENST00000568497 MMP17Q9ULZ9 603 aa14.48□□□□□ -0.09
CLN3-235ENST00000568497 SH3BP1Q9Y3L3 701 aa14.48□□□□□ -0.09
CLN3-235ENST00000568497 GOLGA6L7A0A1B0GV03 622 aa14.47□□□□□ -0.09
CLN3-235ENST00000568497 GOLGA8SH3BPF8 625 aa14.47□□□□□ -0.09
CLN3-235ENST00000568497 MED7O43513 233 aa14.47□□□□□ -0.09
CLN3-235ENST00000568497 STC2O76061 302 aa14.47□□□□□ -0.09
CLN3-235ENST00000568497 SERPINF2P08697 491 aa14.47□□□□□ -0.09
CLN3-235ENST00000568497 RALAP11233 206 aa14.47□□□□□ -0.09
CLN3-235ENST00000568497 TFE3P19532 575 aaPredicted RBP14.47□□□□□ -0.09
CLN3-235ENST00000568497 STAT1P42224 750 aa14.47□□□□□ -0.09
CLN3-235ENST00000568497 ABCG1P45844 678 aa14.47□□□□□ -0.09
CLN3-235ENST00000568497 PPP3CCP48454 512 aa14.47□□□□□ -0.09
CLN3-235ENST00000568497 PDE6CP51160 858 aa14.47□□□□□ -0.09
CLN3-235ENST00000568497 RNASE9P60153 205 aaKnown RBP14.47□□□□□ -0.09
CLN3-235ENST00000568497 NR1H3Q13133 447 aa14.47□□□□□ -0.09
CLN3-235ENST00000568497 STILQ15468 1287 aa14.47□□□□□ -0.09
CLN3-235ENST00000568497 LY6G5CQ5SRR4 150 aa14.47□□□□□ -0.09
CLN3-235ENST00000568497 TMEM25Q86YD3 366 aa14.47□□□□□ -0.09
CLN3-235ENST00000568497 HMGB4Q8WW32 186 aa14.47□□□□□ -0.09
CLN3-235ENST00000568497 ATP2A3Q93084 1043 aa14.47□□□□□ -0.09
CLN3-235ENST00000568497 MYEOVQ96EZ4 313 aa14.47□□□□□ -0.09
CLN3-235ENST00000568497 RBSNQ9H1K0 784 aa14.47□□□□□ -0.09
CLN3-235ENST00000568497 SEPT11Q9NVA2 429 aaKnown RBP14.47□□□□□ -0.09
CLN3-235ENST00000568497 PLK2Q9NYY3 685 aa14.47□□□□□ -0.09
CLN3-235ENST00000568497 MARCH2Q9P0N8 246 aa14.47□□□□□ -0.09
CLN3-235ENST00000568497 DNMT3LQ9UJW3 386 aa14.47□□□□□ -0.09
CLN3-235ENST00000568497 LRRC53A6NM62 1247 aa14.46□□□□□ -0.09
CLN3-235ENST00000568497 ARHGAP33O14559 1287 aa14.46□□□□□ -0.09
CLN3-235ENST00000568497 TSPAN3O60637 253 aa14.46□□□□□ -0.09
CLN3-235ENST00000568497 LTFP02788 710 aa14.46□□□□□ -0.09
CLN3-235ENST00000568497 SYPP08247 313 aa14.46□□□□□ -0.09
CLN3-235ENST00000568497 NCAM1P13591 858 aa14.46□□□□□ -0.09
CLN3-235ENST00000568497 CORO1AP31146 461 aaKnown RBP14.46□□□□□ -0.09
CLN3-235ENST00000568497 RPL6Q02878 288 aaKnown RBP14.46□□□□□ -0.09
CLN3-235ENST00000568497 KDSRQ06136 332 aa14.46□□□□□ -0.09
CLN3-235ENST00000568497 BYSLQ13895 437 aaKnown RBP14.46□□□□□ -0.09
CLN3-235ENST00000568497 DHCR24Q15392 516 aa14.46□□□□□ -0.09
CLN3-235ENST00000568497 FILIP1LQ4L180 1135 aa14.46□□□□□ -0.09
CLN3-235ENST00000568497 RAB6CQ53S08 254 aa14.46□□□□□ -0.09
CLN3-235ENST00000568497 RHBDF2Q6PJF5 856 aa14.46□□□□□ -0.09
CLN3-235ENST00000568497 TMEM92Q6UXU6 159 aa14.46□□□□□ -0.09
CLN3-235ENST00000568497 RABEPKQ7Z6M1 372 aa14.46□□□□□ -0.09
CLN3-235ENST00000568497 TAC4Q86UU9 113 aa14.46□□□□□ -0.09
CLN3-235ENST00000568497 DENND1CQ8IV53 801 aa14.46□□□□□ -0.09
CLN3-235ENST00000568497 NAXDQ8IW45 347 aa14.46□□□□□ -0.09
CLN3-235ENST00000568497 PIP4K2CQ8TBX8 421 aa14.46□□□□□ -0.09
CLN3-235ENST00000568497 HSFY1Q96LI6 401 aa14.46□□□□□ -0.09
CLN3-235ENST00000568497 RAB6CQ9H0N0 254 aa14.46□□□□□ -0.09
CLN3-235ENST00000568497 POLMQ9NP87 494 aaPredicted RBP14.46□□□□□ -0.09
CLN3-235ENST00000568497 CNGB3Q9NQW8 809 aa14.46□□□□□ -0.09
CLN3-235ENST00000568497 TAS2R14Q9NYV8 317 aa14.46□□□□□ -0.09
CLN3-235ENST00000568497 XPO7Q9UIA9 1087 aaKnown RBP14.46□□□□□ -0.09
CLN3-235ENST00000568497 PCDHGC3Q9UN70 934 aa14.46□□□□□ -0.09
CLN3-235ENST00000568497 RAI2Q9Y5P3 530 aa14.46□□□□□ -0.09
CLN3-235ENST00000568497 TMCO5BA8MYB1 307 aa14.45□□□□□ -0.1
CLN3-235ENST00000568497 TK2O00142 265 aa14.45□□□□□ -0.1
CLN3-235ENST00000568497 GGCXP38435 758 aa14.45□□□□□ -0.1
CLN3-235ENST00000568497 PBX1P40424 430 aa14.45□□□□□ -0.1
CLN3-235ENST00000568497 RPL34P49207 117 aaKnown RBP14.45□□□□□ -0.1
CLN3-235ENST00000568497 TUBP50607 506 aa14.45□□□□□ -0.1
CLN3-235ENST00000568497 SGSHP51688 502 aa14.45□□□□□ -0.1
CLN3-235ENST00000568497 NOMO3P69849 1222 aa14.45□□□□□ -0.1
CLN3-235ENST00000568497 CYP4F3Q08477 520 aa14.45□□□□□ -0.1
CLN3-235ENST00000568497 ANO4Q32M45 955 aa14.45□□□□□ -0.1
CLN3-235ENST00000568497 TRNP1Q6NT89 227 aa14.45□□□□□ -0.1
CLN3-235ENST00000568497 MMS22LQ6ZRQ5 1243 aa14.45□□□□□ -0.1
CLN3-235ENST00000568497 TOGARAM2Q6ZUX3 1019 aa14.45□□□□□ -0.1
CLN3-235ENST00000568497 TMEM110Q86TL2 294 aa14.45□□□□□ -0.1
CLN3-235ENST00000568497 ADGRG2Q8IZP9 1017 aa14.45□□□□□ -0.1
CLN3-235ENST00000568497 DEFB106AQ8N104 65 aa14.45□□□□□ -0.1
CLN3-235ENST00000568497 ALLCQ8N6M5 410 aa14.45□□□□□ -0.1
CLN3-235ENST00000568497 DQX1Q8TE96 717 aaKnown RBP14.45□□□□□ -0.1
CLN3-235ENST00000568497 RNF139Q8WU17 664 aa14.45□□□□□ -0.1
CLN3-235ENST00000568497 FAM81BQ96LP2 452 aa14.45□□□□□ -0.1
CLN3-235ENST00000568497 C11orf70Q9BRQ4 267 aa14.45□□□□□ -0.1
CLN3-235ENST00000568497 SYNCQ9H7C4 482 aa14.45□□□□□ -0.1
CLN3-235ENST00000568497 CAPN10Q9HC96 672 aa14.45□□□□□ -0.1
CLN3-235ENST00000568497 CLIC5Q9NZA1 410 aa14.45□□□□□ -0.1
CLN3-235ENST00000568497 CALCOCO1Q9P1Z2 691 aa14.45□□□□□ -0.1
CLN3-235ENST00000568497 DKK4Q9UBT3 224 aa14.45□□□□□ -0.1
CLN3-235ENST00000568497 CLEC4EQ9ULY5 219 aa14.45□□□□□ -0.1
CLN3-235ENST00000568497 SNX10Q9Y5X0 201 aa14.45□□□□□ -0.1
CLN3-235ENST00000568497 PTPRBP23467 1997 aa14.45□□□□□ -0.1
CLN3-235ENST00000568497 PCDH15Q96QU1 1955 aa14.45□□□□□ -0.1
CLN3-235ENST00000568497 CEP192Q8TEP8 1941 aa14.45□□□□□ -0.1
CLN3-235ENST00000568497 K7EQS6 105 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms