RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 DSG2Q14126 1118 aa12.29□□□□□ -0.44
CLK3-222ENST00000568232 SNRNP35Q16560 246 aaKnown RBP12.29□□□□□ -0.44
CLK3-222ENST00000568232 LINC00303Q3SY05 128 aa12.29□□□□□ -0.44
CLK3-222ENST00000568232 CCDC81Q6ZN84 652 aa12.29□□□□□ -0.44
CLK3-222ENST00000568232 ATG14Q6ZNE5 492 aa12.29□□□□□ -0.44
CLK3-222ENST00000568232 USP30Q70CQ3 517 aa12.29□□□□□ -0.44
CLK3-222ENST00000568232 TMC6Q7Z403 805 aa12.29□□□□□ -0.44
CLK3-222ENST00000568232 SLC25A45Q8N413 288 aa12.29□□□□□ -0.44
CLK3-222ENST00000568232 CPXM2Q8N436 756 aa12.29□□□□□ -0.44
CLK3-222ENST00000568232 GOLGA1Q92805 767 aa12.29□□□□□ -0.44
CLK3-222ENST00000568232 HPS3Q969F9 1004 aa12.29□□□□□ -0.44
CLK3-222ENST00000568232 DCLK3Q9C098 648 aa12.29□□□□□ -0.44
CLK3-222ENST00000568232 RSPH9Q9H1X1 276 aaPredicted RBP12.29□□□□□ -0.44
CLK3-222ENST00000568232 ERVMER34-1Q9H9K5 563 aa12.29□□□□□ -0.44
CLK3-222ENST00000568232 FBRSQ9HAH7 460 aa12.29□□□□□ -0.44
CLK3-222ENST00000568232 THSD1Q9NS62 852 aa12.29□□□□□ -0.44
CLK3-222ENST00000568232 MYH10P35580 1976 aa12.29□□□□□ -0.44
CLK3-222ENST00000568232 PMS2P1A4D2B8 440 aa12.28□□□□□ -0.44
CLK3-222ENST00000568232 LRRC72A6NJI9 287 aa12.28□□□□□ -0.44
CLK3-222ENST00000568232 C10orf142B7Z368 130 aa12.28□□□□□ -0.44
CLK3-222ENST00000568232 EFSO43281 561 aa12.28□□□□□ -0.44
CLK3-222ENST00000568232 SUV39H1O43463 412 aa12.28□□□□□ -0.44
CLK3-222ENST00000568232 FAM200BP0CF97 657 aa12.28□□□□□ -0.44
CLK3-222ENST00000568232 ATICP31939 592 aa12.28□□□□□ -0.44
CLK3-222ENST00000568232 CYP24A1Q07973 514 aa12.28□□□□□ -0.44
CLK3-222ENST00000568232 ZNF211Q13398 564 aaPredicted RBP12.28□□□□□ -0.44
CLK3-222ENST00000568232 ALCAMQ13740 583 aa12.28□□□□□ -0.44
CLK3-222ENST00000568232 PSMD6Q15008 389 aa12.28□□□□□ -0.44
CLK3-222ENST00000568232 C3orf38Q5JPI3 329 aa12.28□□□□□ -0.44
CLK3-222ENST00000568232 MBLAC2Q68D91 279 aa12.28□□□□□ -0.44
CLK3-222ENST00000568232 SV2BQ7L1I2 683 aa12.28□□□□□ -0.44
CLK3-222ENST00000568232 PLPP6Q8IY26 295 aa12.28□□□□□ -0.44
CLK3-222ENST00000568232 OR2T34Q8NGX1 318 aa12.28□□□□□ -0.44
CLK3-222ENST00000568232 SYAP1Q96A49 352 aaPredicted RBP12.28□□□□□ -0.44
CLK3-222ENST00000568232 DEPDC7Q96QD5 511 aa12.28□□□□□ -0.44
CLK3-222ENST00000568232 PANK4Q9NVE7 773 aa12.28□□□□□ -0.44
CLK3-222ENST00000568232 SATB2Q9UPW6 733 aa12.28□□□□□ -0.44
CLK3-222ENST00000568232 A0A1B0GVM2 712 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 SLC12A8A0AV02 714 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 FRMD3A2A2Y4 597 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 CLIC2O15247 247 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 PHACTR2O75167 634 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 SIN3BO75182 1162 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 DLDP09622 509 aaKnown RBP12.27□□□□□ -0.45
CLK3-222ENST00000568232 RALAP11233 206 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 GP1BBP13224 206 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 CASP4P49662 377 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 CCR5P51681 352 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 SGSHP51688 502 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 KIF11P52732 1056 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 NDST1P52848 882 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 PPP2CBP62714 309 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 PPP2CAP67775 309 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 SKOR1P84550 965 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 CST6Q15828 149 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 BMT2Q1RMZ1 405 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 ZNF699Q32M78 642 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 ZSCAN23Q3MJ62 389 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 ARL13BQ3SXY8 428 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 MPPE1Q53F39 396 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 ZNF667Q5HYK9 610 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 KIAA0907Q7Z7F0 614 aaPredicted RBP12.27□□□□□ -0.45
CLK3-222ENST00000568232 TADA2BQ86TJ2 420 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 MMAAQ8IVH4 418 aaKnown RBP12.27□□□□□ -0.45
CLK3-222ENST00000568232 FAM217AQ8IXS0 508 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 CRYBG2Q8N1P7 616 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 ZNF276Q8N554 614 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 OXR1Q8N573 874 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 WFDC5Q8TCV5 224 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 WFIKKN2Q8TEU8 576 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 PTCD2Q8WV60 388 aaKnown RBP12.27□□□□□ -0.45
CLK3-222ENST00000568232 MYO19Q96H55 970 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 ZSCAN31Q96LW9 406 aaPredicted RBP12.27□□□□□ -0.45
CLK3-222ENST00000568232 OMDQ99983 421 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 KIAA1586Q9HCI6 787 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 STARD5Q9NSY2 213 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 UCKL1Q9NWZ5 548 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 STK17AQ9UEE5 414 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 SUN2Q9UH99 717 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 GGA2Q9UJY4 613 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 KIF3AQ9Y496 699 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 PCDHA5Q9Y5H7 936 aa12.27□□□□□ -0.45
CLK3-222ENST00000568232 FFAR2O15552 330 aa12.26□□□□□ -0.45
CLK3-222ENST00000568232 PABPC1P11940 636 aaKnown RBP12.26□□□□□ -0.45
CLK3-222ENST00000568232 ITGB6P18564 788 aa12.26□□□□□ -0.45
CLK3-222ENST00000568232 CD70P32970 193 aa12.26□□□□□ -0.45
CLK3-222ENST00000568232 CYP2J2P51589 502 aa12.26□□□□□ -0.45
CLK3-222ENST00000568232 UBAP2LQ14157 1087 aaKnown RBP12.26□□□□□ -0.45
CLK3-222ENST00000568232 SLC45A4Q5BKX6 768 aa12.26□□□□□ -0.45
CLK3-222ENST00000568232 CCDC186Q7Z3E2 898 aa12.26□□□□□ -0.45
CLK3-222ENST00000568232 AHI1Q8N157 1196 aa12.26□□□□□ -0.45
CLK3-222ENST00000568232 AADATQ8N5Z0 425 aa12.26□□□□□ -0.45
CLK3-222ENST00000568232 MFSD2AQ8NA29 543 aa12.26□□□□□ -0.45
CLK3-222ENST00000568232 OR14C36Q8NHC7 312 aa12.26□□□□□ -0.45
CLK3-222ENST00000568232 SLC46A1Q96NT5 459 aa12.26□□□□□ -0.45
CLK3-222ENST00000568232 VRTNQ9H8Y1 702 aa12.26□□□□□ -0.45
CLK3-222ENST00000568232 WDR70Q9NW82 654 aa12.26□□□□□ -0.45
CLK3-222ENST00000568232 CLIC5Q9NZA1 410 aa12.26□□□□□ -0.45
CLK3-222ENST00000568232 MARCH2Q9P0N8 246 aa12.26□□□□□ -0.45
CLK3-222ENST00000568232 ARHGAP20Q9P2F6 1191 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms